Wall clock time and date at job start Wed Apr 1 2020 04:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47265 * 63.61091 * 3 2 1 5 5 C 1.36882 * 120.00105 * 270.31015 * 4 3 2 6 6 H 1.07995 * 120.00146 * 194.08725 * 5 4 3 7 7 C 1.39047 * 119.99617 * 14.08735 * 5 4 3 8 8 N 1.31366 * 120.00270 * 10.38780 * 7 5 4 9 9 Si 1.86803 * 119.99638 * 190.38549 * 7 5 4 10 10 H 1.48496 * 109.47341 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.46933 * 120.00329 * 9 7 5 12 12 H 1.48503 * 109.46929 * 240.00298 * 9 7 5 13 13 C 1.34779 * 119.99993 * 90.30612 * 4 3 2 14 14 O 1.21599 * 119.99593 * 4.34566 * 13 4 3 15 15 C 1.47660 * 119.99820 * 184.34051 * 13 4 3 16 16 C 1.39614 * 120.13073 * 52.60794 * 15 13 4 17 17 C 1.38518 * 119.79025 * 179.74468 * 16 15 13 18 18 N 1.39998 * 119.98039 * 180.22643 * 17 16 15 19 19 C 1.46762 * 124.35032 * 5.87116 * 18 17 16 20 20 C 1.54661 * 105.38561 * 162.85344 * 19 18 17 21 21 C 1.54628 * 101.68245 * 25.76163 * 20 19 18 22 22 C 1.34425 * 124.34912 * 186.16513 * 18 17 16 23 23 O 1.21290 * 124.94372 * 0.38418 * 22 18 17 24 24 C 1.39040 * 120.03977 * 0.52132 * 17 16 15 25 25 C 1.38180 * 120.26129 * 359.72862 * 24 17 16 26 26 C 1.38155 * 120.21119 * 0.02562 * 25 24 17 27 27 Cl 1.73608 * 120.02308 * 180.02562 * 26 25 24 28 28 H 1.09000 * 109.46923 * 303.60773 * 3 2 1 29 29 H 1.08997 * 109.46691 * 183.61069 * 3 2 1 30 30 H 0.96999 * 120.00192 * 179.97438 * 8 7 5 31 31 H 1.08007 * 120.10399 * 359.96908 * 16 15 13 32 32 H 1.09002 * 110.24421 * 281.98056 * 19 18 17 33 33 H 1.09002 * 110.24611 * 43.97839 * 19 18 17 34 34 H 1.08999 * 111.18771 * 267.59326 * 20 19 18 35 35 H 1.08997 * 110.82480 * 143.77234 * 20 19 18 36 36 H 1.09003 * 110.48549 * 216.30956 * 21 20 19 37 37 H 1.08999 * 110.48626 * 93.66936 * 21 20 19 38 38 H 1.08004 * 119.86909 * 179.69792 * 24 17 16 39 39 H 1.07999 * 119.89120 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0966 -0.6130 -1.2373 5 6 3.3194 -1.9625 -1.2903 6 1 3.8860 -2.3846 -2.1071 7 6 2.8160 -2.7899 -0.2926 8 7 1.9611 -2.3157 0.5849 9 14 3.3554 -4.5760 -0.2001 10 1 4.3165 -4.8603 -1.2959 11 1 4.0082 -4.8287 1.1095 12 1 2.1698 -5.4591 -0.3408 13 6 3.3268 0.1512 -2.3233 14 8 3.2050 1.3591 -2.2536 15 6 3.7271 -0.4783 -3.5976 16 6 2.9645 -1.5163 -4.1364 17 6 3.3435 -2.0983 -5.3349 18 7 2.5791 -3.1362 -5.8812 19 6 1.2983 -3.5982 -5.3335 20 6 0.6351 -4.4106 -6.4702 21 6 1.8660 -4.8739 -7.2833 22 6 2.9268 -3.8414 -6.9715 23 8 3.9429 -3.6740 -7.6124 24 6 4.4860 -1.6563 -5.9927 25 6 5.2449 -0.6326 -5.4586 26 6 4.8739 -0.0412 -4.2664 27 17 5.8308 1.2450 -3.6000 28 1 2.9716 -0.5680 0.8559 29 1 2.9708 1.0264 0.0647 30 1 1.6097 -2.8930 1.2806 31 1 2.0799 -1.8621 -3.6221 32 1 1.4671 -4.2315 -4.4625 33 1 0.6732 -2.7463 -5.0659 34 1 -0.0176 -3.7812 -7.0752 35 1 0.0889 -5.2641 -6.0687 36 1 1.6393 -4.8781 -8.3495 37 1 2.1885 -5.8627 -6.9570 38 1 4.7816 -2.1153 -6.9246 39 1 6.1315 -0.2943 -5.9743 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090040168.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:26 Heat of formation + Delta-G solvation = 6.176076 kcal Electronic energy + Delta-G solvation = -28217.524407 eV Core-core repulsion = 24152.155323 eV Total energy + Delta-G solvation = -4065.369084 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.09392 -39.45075 -37.85029 -36.69746 -35.94365 -35.62401 -34.45508 -32.98985 -31.83709 -31.04758 -28.83311 -27.88944 -27.55013 -25.14302 -23.45491 -23.09596 -21.40274 -20.55430 -19.25300 -18.36460 -17.23974 -16.95232 -16.49486 -16.35668 -16.15984 -15.54024 -14.86007 -14.59256 -14.45588 -14.07547 -13.99433 -13.77680 -13.61854 -13.26984 -13.02028 -13.00601 -12.83534 -12.62061 -12.19730 -11.98675 -11.73473 -11.55969 -11.49913 -11.41743 -11.30233 -11.26024 -11.17210 -10.71183 -10.56629 -10.44997 -10.34298 -9.78648 -9.75888 -9.49251 -8.91260 -8.55826 -8.28023 -7.69773 -6.65575 -4.22699 1.22550 1.42684 2.46330 2.56003 2.76474 2.93065 3.06294 3.09566 3.44931 3.67090 3.95588 4.00242 4.04907 4.20312 4.20980 4.57834 4.66901 4.73972 4.76714 5.05235 5.24772 5.29908 5.34306 5.43569 5.47687 5.51594 5.54740 5.60025 5.70303 5.73795 6.11207 6.17957 6.28436 6.40209 6.51692 6.61657 6.72993 7.05475 7.06193 7.14682 7.30199 7.94261 8.06397 8.75240 8.89860 9.08587 9.49033 10.34824 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.008459 B = 0.005384 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3309.271267 B = 5198.905232 C = 6966.273816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.265 3.735 3 C 0.229 3.771 4 N -0.430 5.430 5 C -0.331 4.331 6 H 0.107 0.893 7 C 0.039 3.961 8 N -0.874 5.874 9 Si 0.925 3.075 10 H -0.267 1.267 11 H -0.276 1.276 12 H -0.280 1.280 13 C 0.500 3.500 14 O -0.574 6.574 15 C -0.047 4.047 16 C -0.096 4.096 17 C 0.152 3.848 18 N -0.553 5.553 19 C 0.090 3.910 20 C -0.130 4.130 21 C -0.152 4.152 22 C 0.515 3.485 23 O -0.516 6.516 24 C -0.140 4.140 25 C -0.095 4.095 26 C -0.025 4.025 27 Cl -0.059 7.059 28 H 0.135 0.865 29 H 0.088 0.912 30 H 0.276 0.724 31 H 0.144 0.856 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.160 0.840 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.765 -5.877 -10.236 11.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.172 5.172 2 C -0.052 4.052 3 C 0.103 3.897 4 N -0.148 5.148 5 C -0.458 4.458 6 H 0.125 0.875 7 C -0.166 4.166 8 N -0.512 5.512 9 Si 0.751 3.249 10 H -0.191 1.191 11 H -0.201 1.201 12 H -0.206 1.206 13 C 0.288 3.712 14 O -0.458 6.458 15 C -0.051 4.051 16 C -0.117 4.117 17 C 0.059 3.941 18 N -0.276 5.276 19 C -0.032 4.032 20 C -0.168 4.168 21 C -0.192 4.192 22 C 0.305 3.695 23 O -0.393 6.393 24 C -0.160 4.160 25 C -0.114 4.114 26 C -0.054 4.054 27 Cl -0.030 7.030 28 H 0.153 0.847 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.162 0.838 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.177 0.823 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.535 -5.176 -10.265 11.509 hybrid contribution 0.617 -1.118 0.395 1.337 sum 1.152 -6.294 -9.870 11.763 Atomic orbital electron populations 1.80851 1.13699 1.13389 1.09226 1.29103 0.95165 0.89063 0.91884 1.18717 0.81546 0.98810 0.90633 1.43504 1.55491 1.07720 1.08092 1.19872 1.33639 0.80839 1.11472 0.87518 1.25264 0.94840 1.00576 0.95911 1.69750 1.27396 1.37045 1.17037 0.85866 0.78666 0.81414 0.78970 1.19068 1.20106 1.20571 1.17793 0.83662 0.86550 0.83198 1.90712 1.57587 1.13412 1.84115 1.19577 0.93907 0.95478 0.96163 1.20936 1.01640 0.95591 0.93565 1.17665 0.92799 0.89967 0.93689 1.45760 1.22005 1.32107 1.27774 1.22398 0.83338 1.00057 0.97437 1.22656 0.96862 1.00815 0.96476 1.22335 0.94527 0.99190 1.03177 1.21067 0.87049 0.82059 0.79362 1.90612 1.27140 1.68908 1.52623 1.21530 0.94345 0.97976 1.02178 1.20776 1.00361 0.96182 0.94088 1.20894 0.94334 0.94286 0.95851 1.98357 1.70387 1.48752 1.85473 0.84729 0.89405 0.91219 0.83799 0.89406 0.89102 0.89599 0.88579 0.87643 0.87348 0.82326 0.84620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.09 18.54 42.15 0.78 -11.31 16 2 C 0.27 6.19 13.44 -20.76 -0.28 5.91 16 3 C 0.23 4.90 5.21 -6.83 -0.04 4.87 16 4 N -0.43 -9.60 2.58 -119.08 -0.31 -9.91 16 5 C -0.33 -7.31 8.22 -15.00 -0.12 -7.44 16 6 H 0.11 2.33 5.96 -52.49 -0.31 2.02 16 7 C 0.04 0.85 5.19 -17.45 -0.09 0.76 16 8 N -0.87 -20.09 8.52 55.50 0.47 -19.61 16 9 Si 0.92 17.62 29.57 -169.99 -5.03 12.59 16 10 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 11 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 12 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 13 C 0.50 11.19 6.57 -12.41 -0.08 11.11 16 14 O -0.57 -13.96 15.62 5.28 0.08 -13.88 16 15 C -0.05 -0.93 4.74 -104.96 -0.50 -1.43 16 16 C -0.10 -1.72 7.23 -38.96 -0.28 -2.00 16 17 C 0.15 2.46 6.59 -83.73 -0.55 1.91 16 18 N -0.55 -7.51 3.14 -112.19 -0.35 -7.86 16 19 C 0.09 0.94 6.27 -3.03 -0.02 0.92 16 20 C -0.13 -0.91 7.19 -25.00 -0.18 -1.09 16 21 C -0.15 -1.23 6.86 -26.74 -0.18 -1.42 16 22 C 0.52 6.70 7.92 -10.86 -0.09 6.62 16 23 O -0.52 -8.25 14.81 5.55 0.08 -8.16 16 24 C -0.14 -2.23 9.28 -39.31 -0.36 -2.59 16 25 C -0.09 -1.49 9.81 -39.63 -0.39 -1.88 16 26 C -0.03 -0.46 6.34 -39.04 -0.25 -0.70 16 27 Cl -0.06 -1.05 27.31 -51.86 -1.42 -2.46 16 28 H 0.14 2.84 6.24 -51.93 -0.32 2.52 16 29 H 0.09 1.75 7.36 -51.93 -0.38 1.37 16 30 H 0.28 6.20 8.31 -40.82 -0.34 5.86 16 31 H 0.14 2.62 6.52 -52.48 -0.34 2.28 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.09 0.96 7.70 -51.93 -0.40 0.56 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.16 2.52 5.24 -52.48 -0.28 2.24 16 39 H 0.14 1.77 8.06 -52.49 -0.42 1.34 16 LS Contribution 348.34 15.07 5.25 5.25 Total: -1.00 -29.36 348.34 -7.55 -36.91 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -3.71 Total: 4.90 kcal Atomic # 6 Polarization: 16.95 SS G_CDS: -3.41 Total: 13.54 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 0.59 Total: -48.69 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: 0.16 Total: -22.05 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.59 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.42 Total: -2.46 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.36 -7.55 -36.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090040168.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.086 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds