Wall clock time and date at job start Wed Apr 1 2020 04:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47265 * 63.61091 * 3 2 1 5 5 C 1.36882 * 120.00105 * 270.31015 * 4 3 2 6 6 H 1.07995 * 120.00146 * 194.08725 * 5 4 3 7 7 C 1.39047 * 119.99617 * 14.08735 * 5 4 3 8 8 N 1.31366 * 120.00270 * 10.38780 * 7 5 4 9 9 Si 1.86803 * 119.99638 * 190.38549 * 7 5 4 10 10 H 1.48496 * 109.47341 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.46933 * 120.00329 * 9 7 5 12 12 H 1.48503 * 109.46929 * 240.00298 * 9 7 5 13 13 C 1.34779 * 119.99993 * 90.30612 * 4 3 2 14 14 O 1.21599 * 119.99593 * 4.34566 * 13 4 3 15 15 C 1.47660 * 119.99820 * 184.34051 * 13 4 3 16 16 C 1.39614 * 120.13073 * 52.60794 * 15 13 4 17 17 C 1.38518 * 119.79025 * 179.74468 * 16 15 13 18 18 N 1.39998 * 119.98039 * 180.22643 * 17 16 15 19 19 C 1.46762 * 124.35032 * 5.87116 * 18 17 16 20 20 C 1.54661 * 105.38561 * 162.85344 * 19 18 17 21 21 C 1.54628 * 101.68245 * 25.76163 * 20 19 18 22 22 C 1.34425 * 124.34912 * 186.16513 * 18 17 16 23 23 O 1.21290 * 124.94372 * 0.38418 * 22 18 17 24 24 C 1.39040 * 120.03977 * 0.52132 * 17 16 15 25 25 C 1.38180 * 120.26129 * 359.72862 * 24 17 16 26 26 C 1.38155 * 120.21119 * 0.02562 * 25 24 17 27 27 Cl 1.73608 * 120.02308 * 180.02562 * 26 25 24 28 28 H 1.09000 * 109.46923 * 303.60773 * 3 2 1 29 29 H 1.08997 * 109.46691 * 183.61069 * 3 2 1 30 30 H 0.96999 * 120.00192 * 179.97438 * 8 7 5 31 31 H 1.08007 * 120.10399 * 359.96908 * 16 15 13 32 32 H 1.09002 * 110.24421 * 281.98056 * 19 18 17 33 33 H 1.09002 * 110.24611 * 43.97839 * 19 18 17 34 34 H 1.08999 * 111.18771 * 267.59326 * 20 19 18 35 35 H 1.08997 * 110.82480 * 143.77234 * 20 19 18 36 36 H 1.09003 * 110.48549 * 216.30956 * 21 20 19 37 37 H 1.08999 * 110.48626 * 93.66936 * 21 20 19 38 38 H 1.08004 * 119.86909 * 179.69792 * 24 17 16 39 39 H 1.07999 * 119.89120 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0966 -0.6130 -1.2373 5 6 3.3194 -1.9625 -1.2903 6 1 3.8860 -2.3846 -2.1071 7 6 2.8160 -2.7899 -0.2926 8 7 1.9611 -2.3157 0.5849 9 14 3.3554 -4.5760 -0.2001 10 1 4.3165 -4.8603 -1.2959 11 1 4.0082 -4.8287 1.1095 12 1 2.1698 -5.4591 -0.3408 13 6 3.3268 0.1512 -2.3233 14 8 3.2050 1.3591 -2.2536 15 6 3.7271 -0.4783 -3.5976 16 6 2.9645 -1.5163 -4.1364 17 6 3.3435 -2.0983 -5.3349 18 7 2.5791 -3.1362 -5.8812 19 6 1.2983 -3.5982 -5.3335 20 6 0.6351 -4.4106 -6.4702 21 6 1.8660 -4.8739 -7.2833 22 6 2.9268 -3.8414 -6.9715 23 8 3.9429 -3.6740 -7.6124 24 6 4.4860 -1.6563 -5.9927 25 6 5.2449 -0.6326 -5.4586 26 6 4.8739 -0.0412 -4.2664 27 17 5.8308 1.2450 -3.6000 28 1 2.9716 -0.5680 0.8559 29 1 2.9708 1.0264 0.0647 30 1 1.6097 -2.8930 1.2806 31 1 2.0799 -1.8621 -3.6221 32 1 1.4671 -4.2315 -4.4625 33 1 0.6732 -2.7463 -5.0659 34 1 -0.0176 -3.7812 -7.0752 35 1 0.0889 -5.2641 -6.0687 36 1 1.6393 -4.8781 -8.3495 37 1 2.1885 -5.8627 -6.9570 38 1 4.7816 -2.1153 -6.9246 39 1 6.1315 -0.2943 -5.9743 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090040168.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:25 Heat of formation + Delta-G solvation = -8.984973 kcal Electronic energy + Delta-G solvation = -28218.181839 eV Core-core repulsion = 24152.155323 eV Total energy + Delta-G solvation = -4066.026517 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.15987 -40.99454 -39.28715 -37.78387 -37.43243 -37.23646 -36.29856 -34.00197 -33.55188 -32.48506 -30.01109 -29.31966 -28.63887 -26.83990 -24.75615 -24.27134 -22.34457 -21.90477 -20.73380 -19.80559 -18.72996 -17.99840 -17.94129 -17.74826 -17.57684 -16.83355 -16.43638 -16.16217 -15.80317 -15.30491 -14.97541 -14.85533 -14.78831 -14.71318 -14.55257 -14.43457 -14.05840 -13.91606 -13.70333 -13.37711 -13.25964 -13.07821 -12.95523 -12.75559 -12.68417 -12.41615 -12.35619 -12.17565 -12.02441 -11.91067 -11.82903 -11.22489 -10.96029 -10.89119 -10.54293 -10.04959 -9.99269 -8.94877 -8.36672 -5.98836 -0.13562 0.08823 1.20091 1.35095 1.45221 1.49996 1.60054 1.68823 1.85230 1.95688 2.28119 2.36679 2.60080 2.97886 3.06225 3.25906 3.51516 3.67290 3.78958 3.91335 3.98475 4.05468 4.15520 4.20120 4.41098 4.57760 4.60468 4.65094 4.79279 4.84995 4.91603 4.99683 5.02036 5.05644 5.15989 5.19146 5.30901 5.40064 5.57456 5.80631 6.00291 6.32739 6.91164 7.01722 7.03055 7.34890 7.75514 8.63403 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.008459 B = 0.005384 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3309.271267 B = 5198.905232 C = 6966.273816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C 0.274 3.726 3 C 0.231 3.769 4 N -0.436 5.436 5 C -0.336 4.336 6 H 0.108 0.892 7 C 0.009 3.991 8 N -0.895 5.895 9 Si 0.983 3.017 10 H -0.264 1.264 11 H -0.276 1.276 12 H -0.280 1.280 13 C 0.495 3.505 14 O -0.601 6.601 15 C -0.071 4.071 16 C -0.101 4.101 17 C 0.156 3.844 18 N -0.559 5.559 19 C 0.079 3.921 20 C -0.115 4.115 21 C -0.141 4.141 22 C 0.504 3.496 23 O -0.550 6.550 24 C -0.139 4.139 25 C -0.081 4.081 26 C -0.039 4.039 27 Cl -0.061 7.061 28 H 0.139 0.861 29 H 0.100 0.900 30 H 0.276 0.724 31 H 0.135 0.865 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.165 0.835 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.742 -7.995 -11.705 14.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.199 5.199 2 C -0.043 4.043 3 C 0.105 3.895 4 N -0.154 5.154 5 C -0.463 4.463 6 H 0.125 0.875 7 C -0.193 4.193 8 N -0.534 5.534 9 Si 0.808 3.192 10 H -0.188 1.188 11 H -0.202 1.202 12 H -0.206 1.206 13 C 0.285 3.715 14 O -0.487 6.487 15 C -0.075 4.075 16 C -0.122 4.122 17 C 0.062 3.938 18 N -0.282 5.282 19 C -0.043 4.043 20 C -0.152 4.152 21 C -0.180 4.180 22 C 0.296 3.704 23 O -0.429 6.429 24 C -0.160 4.160 25 C -0.100 4.100 26 C -0.067 4.067 27 Cl -0.032 7.032 28 H 0.156 0.844 29 H 0.118 0.882 30 H 0.086 0.914 31 H 0.153 0.847 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.115 0.885 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.146 0.854 38 H 0.182 0.818 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.491 -7.314 -11.738 13.839 hybrid contribution 0.626 -0.458 0.801 1.115 sum 1.117 -7.772 -10.938 13.464 Atomic orbital electron populations 1.80833 1.14503 1.14438 1.10172 1.29476 0.95541 0.88204 0.91038 1.18821 0.80467 0.99564 0.90687 1.43664 1.55372 1.08045 1.08321 1.19995 1.33767 0.80833 1.11733 0.87466 1.25884 0.94546 1.03485 0.95371 1.69825 1.28126 1.38030 1.17439 0.84985 0.78095 0.77473 0.78688 1.18812 1.20196 1.20554 1.18208 0.83040 0.86324 0.83940 1.90673 1.58718 1.14543 1.84774 1.19512 0.95463 0.96900 0.95642 1.20775 1.01374 0.95678 0.94376 1.17770 0.92924 0.90203 0.92936 1.46074 1.22692 1.31387 1.28060 1.22659 0.82256 1.00343 0.98996 1.22702 0.96393 1.01263 0.94882 1.22415 0.92849 0.98120 1.04613 1.22051 0.87489 0.82417 0.78420 1.90583 1.28875 1.69963 1.53493 1.21694 0.94207 0.97861 1.02203 1.21050 1.00827 0.95211 0.92957 1.21014 0.94284 0.94770 0.96676 1.98348 1.70275 1.48918 1.85667 0.84368 0.88184 0.91360 0.84692 0.89491 0.89806 0.88478 0.85792 0.85619 0.85403 0.81832 0.81791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -25.79 18.54 20.01 0.37 -25.42 16 2 C 0.27 12.94 13.44 89.44 1.20 14.14 16 3 C 0.23 9.98 5.21 84.58 0.44 10.42 16 4 N -0.44 -19.70 2.58 -648.90 -1.67 -21.37 16 5 C -0.34 -14.86 8.22 84.10 0.69 -14.17 16 6 H 0.11 4.68 5.96 -2.91 -0.02 4.67 16 7 C 0.01 0.40 5.19 84.96 0.44 0.84 16 8 N -0.90 -41.01 8.52 21.68 0.18 -40.83 16 9 Si 0.98 35.40 29.57 68.60 2.03 37.43 16 10 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 11 H -0.28 -9.97 7.11 99.48 0.71 -9.27 16 12 H -0.28 -10.04 7.11 99.48 0.71 -9.33 16 13 C 0.50 22.54 6.57 86.73 0.57 23.11 16 14 O -0.60 -29.78 15.62 -4.03 -0.06 -29.85 16 15 C -0.07 -2.84 4.74 -20.09 -0.10 -2.93 16 16 C -0.10 -3.63 7.23 22.67 0.16 -3.46 16 17 C 0.16 4.96 6.59 38.10 0.25 5.21 16 18 N -0.56 -14.42 3.14 -627.44 -1.97 -16.39 16 19 C 0.08 1.51 6.27 86.90 0.54 2.06 16 20 C -0.11 -1.19 7.19 31.71 0.23 -0.96 16 21 C -0.14 -1.76 6.86 30.59 0.21 -1.55 16 22 C 0.50 12.10 7.92 87.90 0.70 12.80 16 23 O -0.55 -16.77 14.81 -3.06 -0.05 -16.82 16 24 C -0.14 -4.29 9.28 22.45 0.21 -4.08 16 25 C -0.08 -2.46 9.81 22.24 0.22 -2.24 16 26 C -0.04 -1.40 6.34 22.62 0.14 -1.26 16 27 Cl -0.06 -2.17 27.31 -2.72 -0.07 -2.24 16 28 H 0.14 5.89 6.24 -2.39 -0.01 5.87 16 29 H 0.10 4.05 7.36 -2.39 -0.02 4.03 16 30 H 0.28 12.29 8.31 -92.71 -0.77 11.52 16 31 H 0.14 5.02 6.52 -2.91 -0.02 5.00 16 32 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.08 1.72 7.70 -2.39 -0.02 1.70 16 34 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.16 4.99 5.24 -2.91 -0.02 4.97 16 39 H 0.16 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -63.47 348.34 5.80 -57.67 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 1.13 Total: 19.88 kcal Atomic # 6 Polarization: 32.02 SS G_CDS: 5.91 Total: 37.93 kcal Atomic # 7 Polarization: -100.92 SS G_CDS: -3.09 Total: -104.01 kcal Atomic # 8 Polarization: -46.55 SS G_CDS: -0.11 Total: -46.66 kcal Atomic # 14 Polarization: 35.40 SS G_CDS: 2.03 Total: 37.43 kcal Atomic # 17 Polarization: -2.17 SS G_CDS: -0.07 Total: -2.24 kcal Total: -63.47 5.80 -57.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090040168.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.682 kcal (2) G-P(sol) polarization free energy of solvation -63.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds