Wall clock time and date at job start Wed Apr 1 2020 04:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42102 * 108.57847 * 2 1 4 4 O 1.42100 * 108.57543 * 228.97461 * 2 1 3 5 5 C 1.81398 * 101.91999 * 114.48616 * 2 1 3 6 6 C 1.53000 * 109.46846 * 179.97438 * 5 2 1 7 7 C 1.53000 * 109.47342 * 180.02562 * 6 5 2 8 8 N 1.46494 * 109.47693 * 179.97438 * 7 6 5 9 9 S 1.65597 * 120.00241 * 164.72209 * 8 7 6 10 10 O 1.42103 * 106.40620 * 178.54272 * 9 8 7 11 11 O 1.42100 * 106.40630 * 311.46546 * 9 8 7 12 12 C 1.76208 * 107.21734 * 65.00320 * 9 8 7 13 13 C 1.38632 * 119.74525 * 269.73112 * 12 9 8 14 14 C 1.37628 * 120.24207 * 179.72238 * 13 12 9 15 15 C 1.40708 * 119.74460 * 0.56531 * 14 13 12 16 16 C 1.41395 * 120.24350 * 179.68162 * 15 14 13 17 17 H 1.07999 * 120.00421 * 204.40366 * 16 15 14 18 18 C 1.39948 * 120.00045 * 24.41232 * 16 15 14 19 19 N 1.30828 * 119.99938 * 17.83864 * 18 16 15 20 20 Si 1.86804 * 120.00206 * 197.84763 * 18 16 15 21 21 H 1.48496 * 109.47170 * 89.99474 * 20 18 16 22 22 H 1.48494 * 109.47127 * 209.99890 * 20 18 16 23 23 H 1.48504 * 109.46764 * 329.99426 * 20 18 16 24 24 C 1.40718 * 119.51587 * 359.70628 * 15 14 13 25 25 C 1.37620 * 119.73960 * 0.02562 * 24 15 14 26 26 H 1.09000 * 109.47072 * 305.51795 * 1 2 3 27 27 H 1.08997 * 109.47216 * 65.51075 * 1 2 3 28 28 H 1.08995 * 109.47599 * 185.51485 * 1 2 3 29 29 H 1.08997 * 109.46985 * 60.00043 * 5 2 1 30 30 H 1.08999 * 109.47284 * 299.99626 * 5 2 1 31 31 H 1.09001 * 109.47666 * 60.00317 * 6 5 2 32 32 H 1.09002 * 109.47489 * 299.99968 * 6 5 2 33 33 H 1.09011 * 109.47083 * 59.99469 * 7 6 5 34 34 H 1.08997 * 109.47087 * 300.00638 * 7 6 5 35 35 H 0.96999 * 119.99814 * 345.00344 * 8 7 6 36 36 H 1.07992 * 119.88185 * 359.96919 * 13 12 9 37 37 H 1.07997 * 120.12556 * 180.27286 * 14 13 12 38 38 H 0.96994 * 120.00050 * 180.02562 * 19 18 16 39 39 H 1.07995 * 120.13001 * 179.97438 * 24 15 14 40 40 H 1.08005 * 119.87252 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2666 -0.8841 -1.0162 5 6 2.1886 -0.7356 1.6152 6 6 3.7054 -0.8195 1.7979 7 6 4.0215 -1.4406 3.1600 8 7 5.4738 -1.5215 3.3347 9 16 6.1131 -1.7920 4.8381 10 8 7.5230 -1.8501 4.6702 11 8 5.4722 -0.8778 5.7172 12 6 5.6049 -3.4031 5.3389 13 6 4.4217 -3.5632 6.0434 14 6 4.0121 -4.8175 6.4346 15 6 4.8052 -5.9383 6.1272 16 6 4.3979 -7.2311 6.5299 17 1 5.1319 -8.0125 6.6600 18 6 3.0435 -7.4981 6.7596 19 7 2.1281 -6.6945 6.2819 20 14 2.5424 -9.0016 7.7485 21 1 2.4601 -8.6430 9.1871 22 1 1.2173 -9.4822 7.2815 23 1 3.5518 -10.0750 7.5628 24 6 6.0071 -5.7632 5.4166 25 6 6.3942 -4.5003 5.0306 26 1 -0.3633 0.5970 0.8365 27 1 -0.3633 0.4260 -0.9352 28 1 -0.3634 -1.0228 0.0988 29 1 1.7609 -1.7369 1.6664 30 1 1.7610 -0.1170 2.4042 31 1 4.1335 0.1816 1.7465 32 1 4.1327 -1.4384 1.0089 33 1 3.5934 -2.4418 3.2110 34 1 3.5941 -0.8222 3.9492 35 1 6.0610 -1.4126 2.5704 36 1 3.8172 -2.7009 6.2827 37 1 3.0879 -4.9404 6.9796 38 1 1.1894 -6.8794 6.4415 39 1 6.6237 -6.6165 5.1757 40 1 7.3161 -4.3635 4.4847 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092131835.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:18 Heat of formation + Delta-G solvation = -141.037575 kcal Electronic energy + Delta-G solvation = -25593.418258 eV Core-core repulsion = 21626.860418 eV Total energy + Delta-G solvation = -3966.557841 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -37.62577 -37.24217 -36.71721 -36.36891 -36.16272 -35.16272 -34.08988 -32.49104 -30.30753 -29.97442 -29.51423 -26.19847 -25.86658 -22.20193 -21.51992 -21.17607 -19.20418 -18.86914 -17.66788 -17.17136 -17.14573 -16.61401 -16.47464 -16.24310 -15.64488 -15.50305 -15.26051 -14.36347 -14.16098 -13.74115 -13.57902 -13.46400 -13.33078 -13.18131 -13.05634 -12.45425 -12.34527 -12.26842 -12.25144 -12.16602 -11.84066 -11.56472 -11.52346 -11.46477 -11.35363 -11.31886 -11.31591 -11.23659 -10.94867 -10.60944 -10.43942 -9.81731 -9.69360 -9.56094 -9.10196 -8.01322 -7.75402 -7.20202 -4.85298 -0.33715 1.21680 2.20077 2.42920 2.84196 2.86653 2.89064 2.89367 3.29580 3.62171 3.67847 3.70290 4.17355 4.36297 4.37447 4.42727 4.48896 4.66365 4.74098 5.10275 5.18564 5.27111 5.31975 5.35208 5.48366 5.69691 5.88102 6.02609 6.06495 6.14806 6.63181 6.66113 6.86150 7.00026 7.24303 7.29908 7.38049 7.58130 7.72371 7.92020 8.26792 8.46432 8.59943 9.71242 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.010277 B = 0.002961 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.939088 B = 9453.843869 C =11496.368247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 2.422 3.578 3 O -0.941 6.941 4 O -0.939 6.939 5 C -0.611 4.611 6 C -0.119 4.119 7 C 0.128 3.872 8 N -1.129 6.129 9 S 2.694 3.306 10 O -0.985 6.985 11 O -0.984 6.984 12 C -0.788 4.788 13 C -0.018 4.018 14 C -0.183 4.183 15 C 0.139 3.861 16 C -0.434 4.434 17 H 0.088 0.912 18 C 0.073 3.927 19 N -0.767 5.767 20 Si 0.918 3.082 21 H -0.263 1.263 22 H -0.274 1.274 23 H -0.258 1.258 24 C -0.239 4.239 25 C 0.003 3.997 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.411 0.589 36 H 0.103 0.897 37 H 0.123 0.877 38 H 0.289 0.711 39 H 0.100 0.900 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.097 7.670 -8.552 13.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.605 3.395 3 O -0.938 6.938 4 O -0.936 6.936 5 C -0.741 4.741 6 C -0.159 4.159 7 C 0.000 4.000 8 N -0.885 5.885 9 S 2.793 3.207 10 O -0.975 6.975 11 O -0.974 6.974 12 C -0.884 4.884 13 C -0.038 4.038 14 C -0.203 4.203 15 C 0.136 3.864 16 C -0.462 4.462 17 H 0.106 0.894 18 C -0.149 4.149 19 N -0.389 5.389 20 Si 0.741 3.259 21 H -0.188 1.188 22 H -0.199 1.199 23 H -0.182 1.182 24 C -0.260 4.260 25 C -0.017 4.017 26 H 0.147 0.853 27 H 0.146 0.854 28 H 0.148 0.852 29 H 0.158 0.842 30 H 0.156 0.844 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.244 0.756 36 H 0.121 0.879 37 H 0.140 0.860 38 H 0.100 0.900 39 H 0.118 0.882 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.406 8.637 -8.645 13.797 hybrid contribution -1.206 -1.666 0.592 2.140 sum -7.612 6.970 -8.053 13.091 Atomic orbital electron populations 1.30276 1.26936 1.11732 1.11719 1.07785 0.78236 0.75770 0.77752 1.93605 1.79014 1.34600 1.86589 1.93611 1.78967 1.66963 1.54087 1.30305 1.05844 1.14746 1.23155 1.21506 0.90943 1.03650 0.99780 1.21141 0.80454 1.01603 0.96781 1.55750 1.13901 1.90492 1.28369 1.01202 0.72594 0.74942 0.71967 1.93496 1.29786 1.88456 1.85798 1.93480 1.77272 1.63158 1.63537 1.29142 1.11282 1.18804 1.29162 1.20260 0.92554 0.97111 0.93894 1.21335 1.02164 0.91062 1.05745 1.17858 0.90063 0.93220 0.85305 1.19966 0.92848 0.96781 1.36577 0.89399 1.26134 0.96449 0.98714 0.93638 1.69810 1.02732 1.35187 1.31177 0.86133 0.78773 0.80623 0.80368 1.18771 1.19865 1.18173 1.21063 1.01172 0.95539 1.08181 1.20173 0.95173 0.92178 0.94195 0.85278 0.85374 0.85187 0.84209 0.84395 0.89428 0.89370 0.90744 0.90101 0.75626 0.87909 0.85969 0.90018 0.88163 0.87732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.53 10.62 101.05 1.07 -1.46 16 2 S 2.42 17.44 5.36 -107.50 -0.58 16.86 16 3 O -0.94 -10.37 18.10 -57.83 -1.05 -11.42 16 4 O -0.94 -10.55 18.10 -57.83 -1.05 -11.60 16 5 C -0.61 -3.97 5.81 37.16 0.22 -3.75 16 6 C -0.12 -1.14 5.36 -26.73 -0.14 -1.28 16 7 C 0.13 1.59 6.22 -4.05 -0.03 1.56 16 8 N -1.13 -16.03 6.00 -10.61 -0.06 -16.09 16 9 S 2.69 50.17 5.73 -107.50 -0.62 49.56 16 10 O -0.98 -20.38 17.26 -57.17 -0.99 -21.37 16 11 O -0.98 -20.33 16.72 -57.17 -0.96 -21.29 16 12 C -0.79 -16.76 5.97 -39.29 -0.23 -17.00 16 13 C -0.02 -0.40 9.49 -39.66 -0.38 -0.77 16 14 C -0.18 -4.40 8.70 -38.87 -0.34 -4.74 16 15 C 0.14 3.43 5.57 -106.83 -0.60 2.84 16 16 C -0.43 -10.39 9.05 -37.74 -0.34 -10.73 16 17 H 0.09 2.00 7.91 -52.49 -0.41 1.59 16 18 C 0.07 1.62 5.14 -17.34 -0.09 1.53 16 19 N -0.77 -17.44 10.95 55.55 0.61 -16.83 16 20 Si 0.92 16.54 29.60 -169.99 -5.03 11.51 16 21 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 22 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 23 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 24 C -0.24 -5.53 9.80 -38.87 -0.38 -5.92 16 25 C 0.00 0.06 9.49 -39.66 -0.38 -0.31 16 26 H 0.13 0.28 8.14 -51.92 -0.42 -0.14 16 27 H 0.13 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.14 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.14 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 34 H 0.08 0.98 7.75 -51.93 -0.40 0.58 16 35 H 0.41 4.82 8.65 -34.47 -0.30 4.52 16 36 H 0.10 2.08 7.59 -52.49 -0.40 1.68 16 37 H 0.12 2.97 6.16 -52.49 -0.32 2.65 16 38 H 0.29 5.86 8.30 -40.82 -0.34 5.52 16 39 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 40 H 0.10 2.07 7.60 -52.48 -0.40 1.67 16 LS Contribution 367.50 15.07 5.54 5.54 Total: -1.00 -35.79 367.50 -10.96 -46.75 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -5.17 Total: 8.41 kcal Atomic # 6 Polarization: -38.41 SS G_CDS: -1.61 Total: -40.03 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.54 Total: -32.93 kcal Atomic # 8 Polarization: -61.64 SS G_CDS: -4.04 Total: -65.67 kcal Atomic # 14 Polarization: 16.54 SS G_CDS: -5.03 Total: 11.51 kcal Atomic # 16 Polarization: 67.61 SS G_CDS: -1.19 Total: 66.42 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.79 -10.96 -46.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131835.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.288 kcal (2) G-P(sol) polarization free energy of solvation -35.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds