Wall clock time and date at job start Wed Apr 1 2020 04:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42102 * 108.57847 * 2 1 4 4 O 1.42100 * 108.57543 * 228.97461 * 2 1 3 5 5 C 1.81398 * 101.91999 * 114.48616 * 2 1 3 6 6 C 1.53000 * 109.46846 * 179.97438 * 5 2 1 7 7 C 1.53000 * 109.47342 * 180.02562 * 6 5 2 8 8 N 1.46494 * 109.47693 * 179.97438 * 7 6 5 9 9 S 1.65597 * 120.00241 * 164.72209 * 8 7 6 10 10 O 1.42103 * 106.40620 * 178.54272 * 9 8 7 11 11 O 1.42100 * 106.40630 * 311.46546 * 9 8 7 12 12 C 1.76208 * 107.21734 * 65.00320 * 9 8 7 13 13 C 1.38632 * 119.74525 * 269.73112 * 12 9 8 14 14 C 1.37628 * 120.24207 * 179.72238 * 13 12 9 15 15 C 1.40708 * 119.74460 * 0.56531 * 14 13 12 16 16 C 1.41395 * 120.24350 * 179.68162 * 15 14 13 17 17 H 1.07999 * 120.00421 * 204.40366 * 16 15 14 18 18 C 1.39948 * 120.00045 * 24.41232 * 16 15 14 19 19 N 1.30828 * 119.99938 * 17.83864 * 18 16 15 20 20 Si 1.86804 * 120.00206 * 197.84763 * 18 16 15 21 21 H 1.48496 * 109.47170 * 89.99474 * 20 18 16 22 22 H 1.48494 * 109.47127 * 209.99890 * 20 18 16 23 23 H 1.48504 * 109.46764 * 329.99426 * 20 18 16 24 24 C 1.40718 * 119.51587 * 359.70628 * 15 14 13 25 25 C 1.37620 * 119.73960 * 0.02562 * 24 15 14 26 26 H 1.09000 * 109.47072 * 305.51795 * 1 2 3 27 27 H 1.08997 * 109.47216 * 65.51075 * 1 2 3 28 28 H 1.08995 * 109.47599 * 185.51485 * 1 2 3 29 29 H 1.08997 * 109.46985 * 60.00043 * 5 2 1 30 30 H 1.08999 * 109.47284 * 299.99626 * 5 2 1 31 31 H 1.09001 * 109.47666 * 60.00317 * 6 5 2 32 32 H 1.09002 * 109.47489 * 299.99968 * 6 5 2 33 33 H 1.09011 * 109.47083 * 59.99469 * 7 6 5 34 34 H 1.08997 * 109.47087 * 300.00638 * 7 6 5 35 35 H 0.96999 * 119.99814 * 345.00344 * 8 7 6 36 36 H 1.07992 * 119.88185 * 359.96919 * 13 12 9 37 37 H 1.07997 * 120.12556 * 180.27286 * 14 13 12 38 38 H 0.96994 * 120.00050 * 180.02562 * 19 18 16 39 39 H 1.07995 * 120.13001 * 179.97438 * 24 15 14 40 40 H 1.08005 * 119.87252 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2666 -0.8841 -1.0162 5 6 2.1886 -0.7356 1.6152 6 6 3.7054 -0.8195 1.7979 7 6 4.0215 -1.4406 3.1600 8 7 5.4738 -1.5215 3.3347 9 16 6.1131 -1.7920 4.8381 10 8 7.5230 -1.8501 4.6702 11 8 5.4722 -0.8778 5.7172 12 6 5.6049 -3.4031 5.3389 13 6 4.4217 -3.5632 6.0434 14 6 4.0121 -4.8175 6.4346 15 6 4.8052 -5.9383 6.1272 16 6 4.3979 -7.2311 6.5299 17 1 5.1319 -8.0125 6.6600 18 6 3.0435 -7.4981 6.7596 19 7 2.1281 -6.6945 6.2819 20 14 2.5424 -9.0016 7.7485 21 1 2.4601 -8.6430 9.1871 22 1 1.2173 -9.4822 7.2815 23 1 3.5518 -10.0750 7.5628 24 6 6.0071 -5.7632 5.4166 25 6 6.3942 -4.5003 5.0306 26 1 -0.3633 0.5970 0.8365 27 1 -0.3633 0.4260 -0.9352 28 1 -0.3634 -1.0228 0.0988 29 1 1.7609 -1.7369 1.6664 30 1 1.7610 -0.1170 2.4042 31 1 4.1335 0.1816 1.7465 32 1 4.1327 -1.4384 1.0089 33 1 3.5934 -2.4418 3.2110 34 1 3.5941 -0.8222 3.9492 35 1 6.0610 -1.4126 2.5704 36 1 3.8172 -2.7009 6.2827 37 1 3.0879 -4.9404 6.9796 38 1 1.1894 -6.8794 6.4415 39 1 6.6237 -6.6165 5.1757 40 1 7.3161 -4.3635 4.4847 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092131835.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:18 Heat of formation + Delta-G solvation = -169.376009 kcal Electronic energy + Delta-G solvation = -25594.647105 eV Core-core repulsion = 21626.860418 eV Total energy + Delta-G solvation = -3967.786687 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.37410 -38.18717 -37.93919 -37.38613 -36.95168 -36.77807 -35.79446 -33.38457 -32.05666 -31.28059 -30.32988 -27.61228 -27.06002 -23.36344 -22.99858 -22.85716 -20.39524 -19.72152 -19.41498 -18.63839 -18.20606 -17.75731 -17.26132 -17.15153 -16.92936 -16.68067 -16.11386 -15.82850 -15.71219 -15.14064 -14.93745 -14.28104 -14.11279 -14.02789 -13.93023 -13.85050 -13.82285 -13.56914 -13.12064 -13.06728 -13.06151 -12.97779 -12.94597 -12.90159 -12.88125 -12.77239 -12.59272 -12.13472 -11.97209 -11.91345 -11.53830 -11.33688 -11.27752 -11.22005 -10.36679 -9.78331 -9.54073 -8.87053 -6.64191 -0.87362 -0.28967 0.48919 1.06713 1.36980 1.44271 1.50961 1.94293 2.12322 2.24679 2.52790 2.80355 2.94449 3.19684 3.52691 3.58629 3.71604 3.87126 3.95054 4.16586 4.26605 4.32385 4.33534 4.45399 4.60011 4.63818 4.83456 4.88290 4.95744 4.99479 5.04135 5.10999 5.19971 5.25112 5.53312 5.60415 5.77134 5.93999 6.15754 6.19008 6.49834 6.69190 6.81714 8.08089 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.010277 B = 0.002961 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.939088 B = 9453.843869 C =11496.368247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.638 4.638 2 S 2.428 3.572 3 O -0.987 6.987 4 O -0.988 6.988 5 C -0.608 4.608 6 C -0.127 4.127 7 C 0.117 3.883 8 N -1.115 6.115 9 S 2.726 3.274 10 O -1.004 7.004 11 O -1.001 7.001 12 C -0.797 4.797 13 C -0.019 4.019 14 C -0.206 4.206 15 C 0.111 3.889 16 C -0.466 4.466 17 H 0.088 0.912 18 C 0.037 3.963 19 N -0.791 5.791 20 Si 0.989 3.011 21 H -0.261 1.261 22 H -0.262 1.262 23 H -0.257 1.257 24 C -0.259 4.259 25 C -0.002 4.002 26 H 0.154 0.846 27 H 0.136 0.864 28 H 0.151 0.849 29 H 0.160 0.840 30 H 0.165 0.835 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.424 0.576 36 H 0.120 0.880 37 H 0.113 0.887 38 H 0.299 0.701 39 H 0.109 0.891 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.788 7.824 -8.654 14.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.791 4.791 2 S 2.616 3.384 3 O -0.984 6.984 4 O -0.986 6.986 5 C -0.739 4.739 6 C -0.167 4.167 7 C -0.010 4.010 8 N -0.876 5.876 9 S 2.822 3.178 10 O -0.994 6.994 11 O -0.991 6.991 12 C -0.890 4.890 13 C -0.038 4.038 14 C -0.226 4.226 15 C 0.108 3.892 16 C -0.493 4.493 17 H 0.107 0.893 18 C -0.183 4.183 19 N -0.414 5.414 20 Si 0.809 3.191 21 H -0.186 1.186 22 H -0.186 1.186 23 H -0.180 1.180 24 C -0.280 4.280 25 C -0.022 4.022 26 H 0.172 0.828 27 H 0.154 0.846 28 H 0.169 0.831 29 H 0.178 0.822 30 H 0.183 0.817 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.260 0.740 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.110 0.890 39 H 0.127 0.873 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.053 8.777 -8.761 14.786 hybrid contribution -0.725 -1.602 0.566 1.847 sum -8.777 7.175 -8.195 13.989 Atomic orbital electron populations 1.30091 1.21793 1.13854 1.13363 1.07272 0.79891 0.74069 0.77176 1.93545 1.81101 1.36588 1.87168 1.93548 1.81117 1.67674 1.56212 1.30287 1.03900 1.16518 1.23161 1.21553 0.93401 1.03705 0.98004 1.21404 0.78888 1.01979 0.98734 1.55339 1.15250 1.89724 1.27336 1.00241 0.71726 0.73441 0.72394 1.93465 1.31248 1.88335 1.86378 1.93457 1.77560 1.63024 1.65081 1.29620 1.10515 1.20352 1.28506 1.20474 0.93020 0.97017 0.93337 1.21359 1.02373 0.91906 1.06973 1.18199 0.90936 0.93959 0.86130 1.20221 0.94077 0.96790 1.38228 0.89349 1.26935 0.95756 1.01592 0.93994 1.69821 1.03476 1.36628 1.31490 0.85075 0.78689 0.76805 0.78538 1.18575 1.18605 1.18032 1.21278 1.01354 0.96616 1.08724 1.20450 0.95873 0.91959 0.93942 0.82806 0.84580 0.83067 0.82200 0.81743 0.89006 0.89173 0.90994 0.89627 0.73969 0.86246 0.86890 0.88952 0.87338 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -2.77 10.62 113.37 1.20 -1.56 16 2 S 2.43 31.82 5.36 -56.49 -0.30 31.52 16 3 O -0.99 -21.29 18.10 -127.37 -2.31 -23.59 16 4 O -0.99 -21.99 18.10 -127.37 -2.30 -24.29 16 5 C -0.61 -6.45 5.81 71.98 0.42 -6.03 16 6 C -0.13 -2.22 5.36 30.59 0.16 -2.05 16 7 C 0.12 2.70 6.22 86.38 0.54 3.24 16 8 N -1.12 -29.99 6.00 -187.49 -1.12 -31.12 16 9 S 2.73 98.34 5.73 -56.49 -0.32 98.02 16 10 O -1.00 -40.35 17.26 -128.00 -2.21 -42.56 16 11 O -1.00 -40.01 16.72 -128.00 -2.14 -42.15 16 12 C -0.80 -33.59 5.97 22.46 0.13 -33.46 16 13 C -0.02 -0.82 9.49 22.22 0.21 -0.61 16 14 C -0.21 -10.13 8.70 22.73 0.20 -9.93 16 15 C 0.11 5.63 5.57 -21.29 -0.12 5.51 16 16 C -0.47 -22.79 9.05 23.46 0.21 -22.58 16 17 H 0.09 4.13 7.91 -2.91 -0.02 4.11 16 18 C 0.04 1.66 5.14 85.26 0.44 2.09 16 19 N -0.79 -36.15 10.95 21.83 0.24 -35.91 16 20 Si 0.99 33.44 29.60 68.60 2.03 35.47 16 21 H -0.26 -8.69 7.11 99.48 0.71 -7.99 16 22 H -0.26 -8.28 7.11 99.48 0.71 -7.57 16 23 H -0.26 -8.54 7.11 99.48 0.71 -7.83 16 24 C -0.26 -12.23 9.80 22.73 0.22 -12.01 16 25 C 0.00 -0.11 9.49 22.22 0.21 0.10 16 26 H 0.15 0.01 8.14 -2.39 -0.02 -0.01 16 27 H 0.14 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.15 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.16 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.16 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.09 1.91 7.75 -2.39 -0.02 1.89 16 35 H 0.42 9.28 8.65 -96.75 -0.84 8.44 16 36 H 0.12 4.77 7.59 -2.91 -0.02 4.74 16 37 H 0.11 5.65 6.16 -2.91 -0.02 5.63 16 38 H 0.30 12.02 8.30 -92.71 -0.77 11.25 16 39 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 40 H 0.12 4.80 7.60 -2.91 -0.02 4.77 16 Total: -1.00 -78.18 367.50 -4.38 -82.55 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: 0.23 Total: 29.36 kcal Atomic # 6 Polarization: -81.12 SS G_CDS: 3.83 Total: -77.29 kcal Atomic # 7 Polarization: -66.15 SS G_CDS: -0.89 Total: -67.03 kcal Atomic # 8 Polarization: -123.64 SS G_CDS: -8.96 Total: -132.60 kcal Atomic # 14 Polarization: 33.44 SS G_CDS: 2.03 Total: 35.47 kcal Atomic # 16 Polarization: 130.16 SS G_CDS: -0.63 Total: 129.54 kcal Total: -78.18 -4.38 -82.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131835.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.821 kcal (2) G-P(sol) polarization free energy of solvation -78.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds