Wall clock time and date at job start Wed Apr 1 2020 04:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.46959 * 2 1 4 4 C 1.46500 * 120.00479 * 273.90827 * 3 2 1 5 5 C 1.50707 * 109.47041 * 276.44059 * 4 3 2 6 6 H 1.07998 * 119.99993 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99661 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00162 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99743 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47145 * 59.99897 * 9 7 5 11 11 H 1.48495 * 109.47320 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47382 * 300.00452 * 9 7 5 13 13 S 1.65604 * 119.99815 * 93.90688 * 3 2 1 14 14 O 1.42096 * 106.40206 * 139.46787 * 13 3 2 15 15 O 1.42099 * 106.40183 * 6.55128 * 13 3 2 16 16 C 1.76192 * 107.22132 * 253.01028 * 13 3 2 17 17 C 1.38262 * 119.99920 * 344.96786 * 16 13 3 18 18 C 1.38214 * 119.99729 * 179.74731 * 17 16 13 19 19 C 1.38251 * 120.00423 * 0.54489 * 18 17 16 20 20 C 1.38221 * 119.99445 * 359.70766 * 19 18 17 21 21 C 1.38208 * 120.00291 * 165.23877 * 16 13 3 22 22 S 1.76206 * 119.99938 * 0.02562 * 21 16 13 23 23 C 1.81403 * 104.44835 * 277.75211 * 22 21 16 24 24 O 1.42101 * 104.27501 * 33.82213 * 22 21 16 25 25 O 1.42105 * 104.27852 * 161.68027 * 22 21 16 26 26 H 1.09011 * 109.46680 * 288.87106 * 1 2 3 27 27 H 1.08997 * 109.47696 * 48.87404 * 1 2 3 28 28 H 1.08999 * 109.47339 * 168.87691 * 1 2 3 29 29 H 1.09003 * 109.46958 * 240.00734 * 2 1 3 30 30 H 1.08995 * 109.47398 * 120.00738 * 2 1 3 31 31 H 1.08999 * 109.47163 * 36.43863 * 4 3 2 32 32 H 1.09000 * 109.47155 * 156.44229 * 4 3 2 33 33 H 0.97001 * 119.99793 * 179.97438 * 8 7 5 34 34 H 1.07999 * 119.99683 * 359.97438 * 17 16 13 35 35 H 1.08004 * 119.99757 * 180.27493 * 18 17 16 36 36 H 1.07992 * 120.00502 * 179.72865 * 19 18 17 37 37 H 1.08005 * 119.99637 * 179.97438 * 20 19 18 38 38 H 1.09003 * 109.47142 * 53.60810 * 23 22 21 39 39 H 1.08991 * 109.46871 * 173.60892 * 23 22 21 40 40 H 1.09005 * 109.46816 * 293.61033 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1809 2.1007 -1.2657 5 6 3.5137 1.7496 -1.8755 6 1 4.1736 1.0599 -1.3705 7 6 3.8903 2.3090 -3.0780 8 7 3.0868 3.1493 -3.6927 9 14 5.5425 1.8744 -3.8335 10 1 5.6031 0.4118 -4.0835 11 1 5.7074 2.6036 -5.1165 12 1 6.6308 2.2625 -2.9007 13 16 2.3864 2.1293 1.4309 14 8 3.5746 2.8736 1.2004 15 8 2.2744 1.1376 2.4425 16 6 1.1145 3.3072 1.7459 17 6 0.2492 3.6778 0.7333 18 6 -0.7517 4.5980 0.9818 19 6 -0.8807 5.1562 2.2400 20 6 -0.0124 4.7896 3.2510 21 6 0.9853 3.8649 3.0039 22 16 2.0930 3.3985 4.2924 23 6 1.4117 1.8447 4.9345 24 8 3.3264 3.1647 3.6267 25 8 1.9656 4.4348 5.2563 26 1 -0.3633 0.3324 0.9725 27 1 -0.3634 0.6759 -0.7741 28 1 -0.3634 -1.0083 -0.1982 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.3819 1.8166 -1.9505 32 1 2.1371 3.1742 -1.0817 33 1 3.3520 3.5432 -4.5386 34 1 0.3532 3.2456 -0.2510 35 1 -1.4304 4.8842 0.1919 36 1 -1.6600 5.8784 2.4331 37 1 -0.1128 5.2260 4.2338 38 1 1.2754 1.1409 4.1134 39 1 2.0999 1.4210 5.6658 40 1 0.4502 2.0387 5.4101 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103267612.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:09 Heat of formation + Delta-G solvation = -89.568837 kcal Electronic energy + Delta-G solvation = -28206.222522 eV Core-core repulsion = 24241.896533 eV Total energy + Delta-G solvation = -3964.325989 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -39.27721 -37.38144 -36.67617 -36.28738 -36.00112 -35.07690 -32.71620 -31.66392 -31.42995 -30.05341 -29.42680 -26.69411 -23.82804 -23.39403 -23.10922 -21.73579 -19.46347 -18.74154 -18.00451 -17.04705 -16.77019 -16.35293 -16.19828 -15.98210 -15.69150 -15.23627 -14.92199 -14.56998 -14.35323 -13.96558 -13.43732 -13.40253 -13.21613 -13.03896 -12.91006 -12.74972 -12.21250 -12.16772 -12.15216 -12.04833 -11.96841 -11.73116 -11.34889 -11.29751 -11.11145 -11.02540 -10.92206 -10.87389 -10.57991 -10.43525 -10.35970 -9.98807 -9.79333 -9.64001 -9.37872 -8.47844 -8.20528 -6.10781 -4.14028 -0.08778 0.43246 0.84046 0.94418 2.64636 3.16043 3.34227 3.37928 3.41317 3.46071 3.77798 3.97130 4.11868 4.43321 4.58286 4.70391 4.82460 4.90094 5.04025 5.19004 5.21965 5.26408 5.34608 5.45612 5.56098 5.62629 5.66120 5.71672 5.87996 5.93353 5.98444 6.07903 6.20796 6.49286 6.54696 6.59726 7.02193 7.24564 7.46570 7.88045 8.13304 8.88881 9.51756 10.98079 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.014702 B = 0.004650 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.072287 B = 6019.695774 C = 6295.790665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.116 3.884 3 N -0.985 5.985 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.065 0.935 7 C 0.062 3.938 8 N -0.899 5.899 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.273 1.273 13 S 2.676 3.324 14 O -0.895 6.895 15 O -0.981 6.981 16 C -0.581 4.581 17 C -0.046 4.046 18 C -0.083 4.083 19 C -0.100 4.100 20 C -0.042 4.042 21 C -0.577 4.577 22 S 2.460 3.540 23 C -0.643 4.643 24 O -0.921 6.921 25 O -0.936 6.936 26 H 0.048 0.952 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.041 0.959 32 H 0.035 0.965 33 H 0.265 0.735 34 H 0.154 0.846 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.149 0.851 38 H 0.171 0.829 39 H 0.136 0.864 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.444 -1.812 12.975 18.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.010 4.010 3 N -0.827 5.827 4 C 0.126 3.874 5 C -0.565 4.565 6 H 0.083 0.917 7 C -0.140 4.140 8 N -0.538 5.538 9 Si 0.725 3.275 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.198 1.198 13 S 2.760 3.240 14 O -0.884 6.884 15 O -0.972 6.972 16 C -0.663 4.663 17 C -0.065 4.065 18 C -0.101 4.101 19 C -0.119 4.119 20 C -0.062 4.062 21 C -0.663 4.663 22 S 2.641 3.359 23 C -0.795 4.795 24 O -0.917 6.917 25 O -0.933 6.933 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.172 0.828 35 H 0.158 0.842 36 H 0.156 0.844 37 H 0.166 0.834 38 H 0.189 0.811 39 H 0.154 0.846 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.050 -1.329 13.572 17.552 hybrid contribution -0.651 0.167 -1.121 1.307 sum -11.702 -1.162 12.451 17.126 Atomic orbital electron populations 1.22298 0.97290 1.02246 1.01669 1.21236 0.93149 0.82622 1.04000 1.57605 1.81199 1.21440 1.22421 1.19232 0.98199 0.90908 0.79023 1.21423 1.02399 1.27411 1.05309 0.91681 1.24925 0.97513 0.94749 0.96805 1.69890 1.36750 1.29994 1.17156 0.86545 0.84131 0.78496 0.78290 1.20101 1.21224 1.19781 1.03000 0.74180 0.73721 0.73085 1.93661 1.39267 1.71785 1.83708 1.93351 1.87225 1.59362 1.57247 1.31605 1.18107 1.17699 0.98844 1.21403 0.91876 0.94691 0.98526 1.21656 0.96940 0.94413 0.97125 1.21524 0.98560 0.98585 0.93187 1.21053 0.91545 0.93154 1.00407 1.30324 1.15395 1.08510 1.12066 1.06453 0.75758 0.78146 0.75572 1.30381 1.12953 1.21095 1.15107 1.93702 1.39012 1.86250 1.72781 1.93561 1.86391 1.53312 1.60018 0.93288 0.91883 0.91771 0.89126 0.90059 0.94082 0.94733 0.92572 0.82830 0.84242 0.84436 0.83362 0.81100 0.84598 0.85526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 10.24 37.16 0.38 -1.90 16 2 C 0.12 1.88 6.28 -4.04 -0.03 1.85 16 3 N -0.99 -19.72 2.29 -115.66 -0.27 -19.98 16 4 C 0.25 5.86 3.70 -5.19 -0.02 5.84 16 5 C -0.53 -14.36 9.37 -34.44 -0.32 -14.68 16 6 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -25.39 13.29 55.43 0.74 -24.66 16 9 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 13 S 2.68 55.26 3.74 -107.50 -0.40 54.86 16 14 O -0.89 -23.12 15.97 -66.42 -1.06 -24.18 16 15 O -0.98 -18.14 11.46 -65.77 -0.75 -18.89 16 16 C -0.58 -10.17 5.81 -39.58 -0.23 -10.40 16 17 C -0.05 -0.71 9.14 -39.58 -0.36 -1.07 16 18 C -0.08 -1.01 10.05 -39.59 -0.40 -1.41 16 19 C -0.10 -1.09 10.05 -39.58 -0.40 -1.49 16 20 C -0.04 -0.53 9.48 -39.58 -0.38 -0.91 16 21 C -0.58 -8.99 5.64 -39.59 -0.22 -9.21 16 22 S 2.46 37.55 5.12 -107.50 -0.55 37.00 16 23 C -0.64 -6.84 10.31 101.05 1.04 -5.80 16 24 O -0.92 -18.39 13.22 -69.94 -0.92 -19.31 16 25 O -0.94 -14.74 16.94 -57.54 -0.97 -15.72 16 26 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 27 H 0.06 0.83 8.12 -51.93 -0.42 0.41 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 1.48 8.10 -51.93 -0.42 1.06 16 30 H 0.08 1.21 6.96 -51.93 -0.36 0.85 16 31 H 0.04 0.95 8.10 -51.93 -0.42 0.53 16 32 H 0.03 0.86 6.85 -51.93 -0.36 0.50 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.15 2.40 5.34 -52.49 -0.28 2.12 16 35 H 0.14 1.26 8.06 -52.48 -0.42 0.83 16 36 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.15 1.48 7.40 -52.48 -0.39 1.09 16 38 H 0.17 2.00 5.33 -51.92 -0.28 1.72 16 39 H 0.14 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.13 0.89 8.14 -51.92 -0.42 0.47 16 LS Contribution 349.40 15.07 5.27 5.27 Total: -1.00 -35.78 349.40 -9.99 -45.77 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.01 Total: 0.81 kcal Atomic # 6 Polarization: -36.52 SS G_CDS: -1.03 Total: -37.55 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.47 Total: -44.64 kcal Atomic # 8 Polarization: -74.38 SS G_CDS: -3.71 Total: -78.10 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 92.81 SS G_CDS: -0.95 Total: 91.86 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.78 -9.99 -45.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103267612.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.804 kcal (2) G-P(sol) polarization free energy of solvation -35.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds