Wall clock time and date at job start Wed Apr 1 2020 04:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.46959 * 2 1 4 4 C 1.46500 * 120.00479 * 273.90827 * 3 2 1 5 5 C 1.50707 * 109.47041 * 276.44059 * 4 3 2 6 6 H 1.07998 * 119.99993 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99661 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00162 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99743 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47145 * 59.99897 * 9 7 5 11 11 H 1.48495 * 109.47320 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47382 * 300.00452 * 9 7 5 13 13 S 1.65604 * 119.99815 * 93.90688 * 3 2 1 14 14 O 1.42096 * 106.40206 * 139.46787 * 13 3 2 15 15 O 1.42099 * 106.40183 * 6.55128 * 13 3 2 16 16 C 1.76192 * 107.22132 * 253.01028 * 13 3 2 17 17 C 1.38262 * 119.99920 * 344.96786 * 16 13 3 18 18 C 1.38214 * 119.99729 * 179.74731 * 17 16 13 19 19 C 1.38251 * 120.00423 * 0.54489 * 18 17 16 20 20 C 1.38221 * 119.99445 * 359.70766 * 19 18 17 21 21 C 1.38208 * 120.00291 * 165.23877 * 16 13 3 22 22 S 1.76206 * 119.99938 * 0.02562 * 21 16 13 23 23 C 1.81403 * 104.44835 * 277.75211 * 22 21 16 24 24 O 1.42101 * 104.27501 * 33.82213 * 22 21 16 25 25 O 1.42105 * 104.27852 * 161.68027 * 22 21 16 26 26 H 1.09011 * 109.46680 * 288.87106 * 1 2 3 27 27 H 1.08997 * 109.47696 * 48.87404 * 1 2 3 28 28 H 1.08999 * 109.47339 * 168.87691 * 1 2 3 29 29 H 1.09003 * 109.46958 * 240.00734 * 2 1 3 30 30 H 1.08995 * 109.47398 * 120.00738 * 2 1 3 31 31 H 1.08999 * 109.47163 * 36.43863 * 4 3 2 32 32 H 1.09000 * 109.47155 * 156.44229 * 4 3 2 33 33 H 0.97001 * 119.99793 * 179.97438 * 8 7 5 34 34 H 1.07999 * 119.99683 * 359.97438 * 17 16 13 35 35 H 1.08004 * 119.99757 * 180.27493 * 18 17 16 36 36 H 1.07992 * 120.00502 * 179.72865 * 19 18 17 37 37 H 1.08005 * 119.99637 * 179.97438 * 20 19 18 38 38 H 1.09003 * 109.47142 * 53.60810 * 23 22 21 39 39 H 1.08991 * 109.46871 * 173.60892 * 23 22 21 40 40 H 1.09005 * 109.46816 * 293.61033 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1809 2.1007 -1.2657 5 6 3.5137 1.7496 -1.8755 6 1 4.1736 1.0599 -1.3705 7 6 3.8903 2.3090 -3.0780 8 7 3.0868 3.1493 -3.6927 9 14 5.5425 1.8744 -3.8335 10 1 5.6031 0.4118 -4.0835 11 1 5.7074 2.6036 -5.1165 12 1 6.6308 2.2625 -2.9007 13 16 2.3864 2.1293 1.4309 14 8 3.5746 2.8736 1.2004 15 8 2.2744 1.1376 2.4425 16 6 1.1145 3.3072 1.7459 17 6 0.2492 3.6778 0.7333 18 6 -0.7517 4.5980 0.9818 19 6 -0.8807 5.1562 2.2400 20 6 -0.0124 4.7896 3.2510 21 6 0.9853 3.8649 3.0039 22 16 2.0930 3.3985 4.2924 23 6 1.4117 1.8447 4.9345 24 8 3.3264 3.1647 3.6267 25 8 1.9656 4.4348 5.2563 26 1 -0.3633 0.3324 0.9725 27 1 -0.3634 0.6759 -0.7741 28 1 -0.3634 -1.0083 -0.1982 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.3819 1.8166 -1.9505 32 1 2.1371 3.1742 -1.0817 33 1 3.3520 3.5432 -4.5386 34 1 0.3532 3.2456 -0.2510 35 1 -1.4304 4.8842 0.1919 36 1 -1.6600 5.8784 2.4331 37 1 -0.1128 5.2260 4.2338 38 1 1.2754 1.1409 4.1134 39 1 2.0999 1.4210 5.6658 40 1 0.4502 2.0387 5.4101 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103267612.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:08 Heat of formation + Delta-G solvation = -116.419719 kcal Electronic energy + Delta-G solvation = -28207.386863 eV Core-core repulsion = 24241.896533 eV Total energy + Delta-G solvation = -3965.490330 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.32383 -38.65689 -38.22506 -37.80541 -37.26769 -36.72690 -34.72160 -32.71257 -32.50937 -31.50229 -30.33265 -28.53105 -25.10986 -24.78921 -24.38060 -23.17424 -20.66273 -20.02066 -19.49355 -18.47226 -18.38999 -17.92260 -17.44199 -17.22694 -17.19112 -16.46336 -16.24485 -16.03175 -15.61952 -15.43232 -14.71446 -14.65283 -14.47858 -14.12229 -14.00719 -13.85335 -13.80968 -13.56953 -13.43792 -13.36470 -13.25883 -13.12549 -12.94976 -12.83690 -12.71617 -12.67356 -12.30200 -12.23648 -12.13511 -12.01394 -11.73713 -11.63382 -11.56451 -10.66533 -10.59947 -10.45402 -9.86568 -8.21578 -6.31251 -1.15430 -0.70033 -0.64536 -0.10749 1.38740 1.43378 1.49938 1.53498 1.93799 2.14614 2.41589 2.62107 2.73683 2.84329 3.10255 3.53762 3.63775 3.82813 3.96437 4.04834 4.09034 4.12876 4.28517 4.39570 4.45822 4.47824 4.58486 4.67618 4.72897 4.95930 5.02144 5.07726 5.10128 5.11114 5.14401 5.42254 5.49061 5.63051 5.69857 5.90160 6.10309 6.75492 7.36976 8.85880 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.014702 B = 0.004650 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.072287 B = 6019.695774 C = 6295.790665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.103 3.897 3 N -0.989 5.989 4 C 0.264 3.736 5 C -0.548 4.548 6 H 0.052 0.948 7 C 0.015 3.985 8 N -0.922 5.922 9 Si 0.950 3.050 10 H -0.261 1.261 11 H -0.275 1.275 12 H -0.283 1.283 13 S 2.675 3.325 14 O -0.967 6.967 15 O -0.973 6.973 16 C -0.602 4.602 17 C -0.063 4.063 18 C -0.081 4.081 19 C -0.080 4.080 20 C -0.043 4.043 21 C -0.591 4.591 22 S 2.441 3.559 23 C -0.619 4.619 24 O -0.982 6.982 25 O -0.950 6.950 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.016 0.984 33 H 0.268 0.732 34 H 0.143 0.857 35 H 0.176 0.824 36 H 0.189 0.811 37 H 0.178 0.822 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.593 -1.838 14.223 21.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.021 4.021 3 N -0.831 5.831 4 C 0.141 3.859 5 C -0.587 4.587 6 H 0.070 0.930 7 C -0.184 4.184 8 N -0.562 5.562 9 Si 0.775 3.225 10 H -0.185 1.185 11 H -0.199 1.199 12 H -0.209 1.209 13 S 2.766 3.234 14 O -0.957 6.957 15 O -0.963 6.963 16 C -0.689 4.689 17 C -0.082 4.082 18 C -0.099 4.099 19 C -0.098 4.098 20 C -0.062 4.062 21 C -0.678 4.678 22 S 2.626 3.374 23 C -0.774 4.774 24 O -0.978 6.978 25 O -0.947 6.947 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.110 0.890 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.034 0.966 33 H 0.077 0.923 34 H 0.160 0.840 35 H 0.193 0.807 36 H 0.206 0.794 37 H 0.195 0.805 38 H 0.182 0.818 39 H 0.180 0.820 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -14.150 -1.395 14.800 20.523 hybrid contribution 0.169 0.204 -1.371 1.396 sum -13.981 -1.191 13.429 19.422 Atomic orbital electron populations 1.22247 0.94318 1.03914 1.02329 1.21545 0.95741 0.80687 1.04144 1.57439 1.81811 1.22832 1.20972 1.18820 0.96545 0.90225 0.80332 1.21797 1.03933 1.27287 1.05729 0.93006 1.25655 1.00618 0.94803 0.97343 1.69961 1.38076 1.30630 1.17521 0.85727 0.79965 0.79198 0.77592 1.18517 1.19938 1.20906 1.02405 0.74072 0.73870 0.73048 1.93576 1.44113 1.73296 1.84679 1.93340 1.87343 1.59269 1.56355 1.30833 1.18379 1.18984 1.00716 1.21513 0.93000 0.96082 0.97642 1.22101 0.96022 0.92843 0.98929 1.22145 0.98330 0.97674 0.91687 1.21566 0.90521 0.91768 1.02357 1.30325 1.16473 1.09880 1.11162 1.06780 0.75349 0.79950 0.75322 1.30242 1.15531 1.16354 1.15307 1.93641 1.42768 1.87348 1.74092 1.93528 1.86510 1.55034 1.59606 0.92000 0.92390 0.88993 0.89883 0.89047 0.93748 0.96605 0.92305 0.83974 0.80695 0.79356 0.80505 0.81811 0.82031 0.80893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.17 10.24 71.98 0.74 -3.43 16 2 C 0.10 3.40 6.28 86.38 0.54 3.94 16 3 N -0.99 -41.30 2.29 -519.85 -1.19 -42.49 16 4 C 0.26 13.08 3.70 85.64 0.32 13.39 16 5 C -0.55 -31.24 9.37 25.60 0.24 -31.00 16 6 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 7 C 0.02 0.88 5.46 84.65 0.46 1.34 16 8 N -0.92 -53.23 13.29 21.45 0.28 -52.94 16 9 Si 0.95 45.15 29.54 68.60 2.03 47.18 16 10 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 12 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 13 S 2.68 115.78 3.74 -56.49 -0.21 115.57 16 14 O -0.97 -53.93 15.97 -119.16 -1.90 -55.83 16 15 O -0.97 -36.86 11.46 -119.78 -1.37 -38.23 16 16 C -0.60 -21.28 5.81 22.27 0.13 -21.15 16 17 C -0.06 -1.93 9.14 22.27 0.20 -1.73 16 18 C -0.08 -1.71 10.05 22.27 0.22 -1.49 16 19 C -0.08 -1.38 10.05 22.27 0.22 -1.16 16 20 C -0.04 -0.94 9.48 22.27 0.21 -0.73 16 21 C -0.59 -17.89 5.64 22.27 0.13 -17.77 16 22 S 2.44 74.01 5.12 -56.49 -0.29 73.72 16 23 C -0.62 -11.49 10.31 113.37 1.17 -10.33 16 24 O -0.98 -41.54 13.22 -115.79 -1.53 -43.07 16 25 O -0.95 -29.17 16.94 -127.65 -2.16 -31.33 16 26 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 27 H 0.06 1.48 8.12 -2.39 -0.02 1.46 16 28 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.08 2.80 8.10 -2.39 -0.02 2.78 16 30 H 0.09 2.76 6.96 -2.39 -0.02 2.74 16 31 H 0.04 2.14 8.10 -2.39 -0.02 2.12 16 32 H 0.02 0.85 6.85 -2.39 -0.02 0.83 16 33 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 34 H 0.14 4.59 5.34 -2.91 -0.02 4.57 16 35 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 36 H 0.19 1.38 8.06 -2.91 -0.02 1.35 16 37 H 0.18 2.80 7.40 -2.91 -0.02 2.77 16 38 H 0.16 3.50 5.33 -2.39 -0.01 3.48 16 39 H 0.16 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.17 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -84.48 349.40 -0.70 -85.18 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 1.06 Total: 12.35 kcal Atomic # 6 Polarization: -74.69 SS G_CDS: 4.58 Total: -70.10 kcal Atomic # 7 Polarization: -94.53 SS G_CDS: -0.91 Total: -95.44 kcal Atomic # 8 Polarization: -161.50 SS G_CDS: -6.97 Total: -168.46 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 16 Polarization: 189.79 SS G_CDS: -0.50 Total: 189.29 kcal Total: -84.48 -0.70 -85.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103267612.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.239 kcal (2) G-P(sol) polarization free energy of solvation -84.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds