Wall clock time and date at job start Wed Apr 1 2020 04:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47147 * 2 1 4 4 C 1.50694 * 109.47303 * 120.00455 * 2 1 3 5 5 H 1.08002 * 119.99699 * 119.99834 * 4 2 1 6 6 C 1.37876 * 120.00323 * 299.99784 * 4 2 1 7 7 N 1.31520 * 119.99562 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00206 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47471 * 60.00062 * 8 6 4 10 10 H 1.48504 * 109.47409 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47077 * 299.99956 * 8 6 4 12 12 N 1.46508 * 109.46895 * 240.00655 * 2 1 3 13 13 C 1.46505 * 119.99662 * 299.99920 * 12 2 1 14 14 S 1.65591 * 120.00112 * 119.99759 * 12 2 1 15 15 O 1.42101 * 106.40500 * 336.45908 * 14 12 2 16 16 O 1.42104 * 106.40278 * 203.54233 * 14 12 2 17 17 C 1.76195 * 107.22084 * 90.00065 * 14 12 2 18 18 C 1.38233 * 120.00186 * 89.99343 * 17 14 12 19 19 C 1.38234 * 120.00037 * 179.72636 * 18 17 14 20 20 C 1.38235 * 120.00220 * 0.28719 * 19 18 17 21 21 S 1.76203 * 120.00231 * 179.97438 * 20 19 18 22 22 C 1.81395 * 104.45051 * 89.99585 * 21 20 19 23 23 O 1.42103 * 104.27682 * 206.06947 * 21 20 19 24 24 O 1.42100 * 104.27273 * 333.92170 * 21 20 19 25 25 C 1.38237 * 119.99712 * 359.94731 * 20 19 18 26 26 C 1.38234 * 120.00033 * 0.02562 * 25 20 19 27 27 H 1.09003 * 109.47141 * 299.99401 * 1 2 3 28 28 H 1.08999 * 109.47680 * 59.99257 * 1 2 3 29 29 H 1.09007 * 109.47253 * 179.97438 * 1 2 3 30 30 H 0.96998 * 119.99559 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.46861 * 270.00176 * 13 12 2 32 32 H 1.08997 * 109.47057 * 30.00018 * 13 12 2 33 33 H 1.08999 * 109.47255 * 150.00260 * 13 12 2 34 34 H 1.08002 * 120.00157 * 0.02562 * 18 17 14 35 35 H 1.07999 * 120.00009 * 180.25939 * 19 18 17 36 36 H 1.09001 * 109.47019 * 60.00225 * 22 21 20 37 37 H 1.09004 * 109.47133 * 179.97438 * 22 21 20 38 38 H 1.08998 * 109.47505 * 299.99949 * 22 21 20 39 39 H 1.08001 * 119.99643 * 180.02562 * 25 20 19 40 40 H 1.08003 * 119.99512 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1311 6 6 1.6993 -0.2396 2.4827 7 7 0.9437 0.8301 2.6034 8 14 2.3227 -1.1198 4.0077 9 1 3.8077 -1.1193 4.0075 10 1 1.8271 -0.4203 5.2204 11 1 1.8282 -2.5201 4.0079 12 7 2.0183 -0.6905 -1.1963 13 6 1.6643 -2.0931 -1.4282 14 16 2.9702 0.1143 -2.2863 15 8 2.6902 1.4974 -2.1193 16 8 2.8225 -0.5643 -3.5261 17 6 4.6443 -0.1180 -1.7883 18 6 5.3643 -1.1967 -2.2667 19 6 6.6795 -1.3759 -1.8804 20 6 7.2728 -0.4796 -1.0111 21 16 8.9489 -0.7084 -0.5182 22 6 9.9130 0.2026 -1.7556 23 8 9.0321 -0.0692 0.7482 24 8 9.1647 -2.1068 -0.6485 25 6 6.5512 0.5964 -0.5290 26 6 5.2362 0.7758 -0.9157 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 0.7091 1.1611 3.4845 31 1 2.4156 -2.7376 -0.9719 32 1 0.6903 -2.3001 -0.9848 33 1 1.6236 -2.2851 -2.5004 34 1 4.9009 -1.8969 -2.9460 35 1 7.2433 -2.2163 -2.2574 36 1 9.6239 1.2535 -1.7398 37 1 10.9748 0.1147 -1.5257 38 1 9.7194 -0.2126 -2.7447 39 1 7.0149 1.2968 0.1499 40 1 4.6727 1.6168 -0.5392 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103496522.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:45 Heat of formation + Delta-G solvation = -129.771131 kcal Electronic energy + Delta-G solvation = -27025.598725 eV Core-core repulsion = 23059.529434 eV Total energy + Delta-G solvation = -3966.069291 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.29575 -38.45187 -38.22328 -37.96571 -37.05919 -37.00588 -34.56297 -32.81111 -32.27640 -30.95130 -30.30791 -27.34270 -27.02846 -24.99047 -24.13325 -22.61081 -20.23154 -20.13393 -19.20213 -18.67879 -18.36578 -18.14974 -17.42985 -17.21428 -16.93953 -16.44581 -15.93461 -15.88720 -15.28799 -15.10926 -14.76460 -14.71123 -14.57767 -14.36201 -13.96210 -13.93305 -13.70044 -13.50524 -13.28209 -13.22582 -13.20739 -13.09999 -12.96492 -12.80263 -12.65469 -12.58499 -12.52723 -12.28224 -12.19519 -12.09539 -11.90701 -11.65434 -11.18545 -10.91348 -10.52386 -10.23187 -9.71813 -8.13143 -6.27314 -1.05140 -0.79325 -0.56360 0.08995 1.41437 1.43600 1.49405 1.73411 1.83607 2.18501 2.42180 2.67454 2.94555 3.06681 3.15406 3.17992 3.63780 3.75541 4.08294 4.09842 4.10386 4.11639 4.34176 4.42668 4.65830 4.71680 4.75758 4.78009 4.78437 4.89398 4.95254 4.96294 5.00980 5.13835 5.14447 5.58307 5.59675 5.67802 5.81699 6.05712 6.25561 6.80929 7.42475 8.90887 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.010836 B = 0.004534 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.468043 B = 6173.663634 C = 7840.749109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.270 3.730 3 H 0.032 0.968 4 C -0.533 4.533 5 H 0.062 0.938 6 C 0.024 3.976 7 N -0.912 5.912 8 Si 0.947 3.053 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.269 1.269 12 N -0.986 5.986 13 C 0.088 3.912 14 S 2.692 3.308 15 O -0.986 6.986 16 O -0.973 6.973 17 C -0.634 4.634 18 C -0.051 4.051 19 C -0.050 4.050 20 C -0.617 4.617 21 S 2.502 3.498 22 C -0.616 4.616 23 O -0.973 6.973 24 O -0.965 6.965 25 C -0.055 4.055 26 C -0.052 4.052 27 H 0.072 0.928 28 H 0.025 0.975 29 H 0.047 0.953 30 H 0.265 0.735 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.166 0.834 35 H 0.181 0.819 36 H 0.154 0.846 37 H 0.161 0.839 38 H 0.160 0.840 39 H 0.166 0.834 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.964 -2.912 -11.164 19.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.166 3.834 3 H 0.050 0.950 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.176 4.176 7 N -0.551 5.551 8 Si 0.773 3.227 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.194 1.194 12 N -0.825 5.825 13 C -0.057 4.057 14 S 2.784 3.216 15 O -0.977 6.977 16 O -0.963 6.963 17 C -0.721 4.721 18 C -0.070 4.070 19 C -0.069 4.069 20 C -0.701 4.701 21 S 2.683 3.317 22 C -0.771 4.771 23 O -0.971 6.971 24 O -0.963 6.963 25 C -0.074 4.074 26 C -0.072 4.072 27 H 0.091 0.909 28 H 0.044 0.956 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.184 0.816 35 H 0.198 0.802 36 H 0.173 0.827 37 H 0.179 0.821 38 H 0.178 0.822 39 H 0.184 0.816 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 15.800 -2.819 -11.023 19.471 hybrid contribution -0.151 0.043 1.094 1.106 sum 15.649 -2.777 -9.929 18.740 Atomic orbital electron populations 1.21956 0.97263 1.00369 1.00368 1.18501 0.92368 0.91588 0.80934 0.94987 1.21565 1.31726 1.13104 0.90892 0.92000 1.25541 0.95150 0.95551 1.01363 1.69975 1.37072 1.23592 1.24433 0.85791 0.78468 0.79131 0.79341 1.20497 1.20898 1.19367 1.57286 1.63495 1.22946 1.38798 1.21579 1.02539 0.79778 1.01807 1.01714 0.73798 0.72979 0.73107 1.93527 1.84375 1.33172 1.86630 1.93499 1.86349 1.75475 1.41015 1.31402 1.25595 1.04935 1.10162 1.21378 0.94937 0.94267 0.96460 1.21442 0.95088 0.97324 0.93079 1.31330 1.26539 1.03271 1.08915 1.05278 0.74248 0.75305 0.76846 1.29999 1.14737 1.15642 1.16718 1.93564 1.85785 1.77871 1.39838 1.93551 1.84597 1.30562 1.87565 1.21304 0.93889 0.96192 0.96031 1.21207 0.96038 0.97329 0.92640 0.90947 0.95633 0.93432 0.92576 0.92578 0.90115 0.89461 0.81610 0.80153 0.82731 0.82056 0.82183 0.81639 0.84366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.50 8.95 71.98 0.64 -5.86 16 2 C 0.27 13.01 2.62 44.24 0.12 13.13 16 3 H 0.03 1.73 6.91 -2.39 -0.02 1.71 16 4 C -0.53 -27.32 8.37 25.60 0.21 -27.10 16 5 H 0.06 3.11 7.65 -2.91 -0.02 3.08 16 6 C 0.02 1.28 5.30 84.65 0.45 1.73 16 7 N -0.91 -50.14 11.32 21.45 0.24 -49.90 16 8 Si 0.95 42.40 29.54 68.60 2.03 44.43 16 9 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 12 N -0.99 -39.46 3.06 -520.44 -1.59 -41.05 16 13 C 0.09 2.89 9.90 127.77 1.27 4.15 16 14 S 2.69 101.59 5.69 -56.49 -0.32 101.27 16 15 O -0.99 -43.43 15.85 -128.00 -2.03 -45.46 16 16 O -0.97 -35.73 15.89 -128.00 -2.03 -37.76 16 17 C -0.63 -21.11 5.97 22.27 0.13 -20.98 16 18 C -0.05 -1.36 9.52 22.27 0.21 -1.15 16 19 C -0.05 -1.13 9.47 22.27 0.21 -0.92 16 20 C -0.62 -14.26 5.66 22.27 0.13 -14.13 16 21 S 2.50 43.55 5.80 -56.49 -0.33 43.22 16 22 C -0.62 -2.88 10.80 113.37 1.22 -1.66 16 23 O -0.97 -24.96 17.13 -127.65 -2.19 -27.15 16 24 O -0.97 -22.35 17.13 -127.65 -2.19 -24.54 16 25 C -0.05 -1.50 9.47 22.27 0.21 -1.29 16 26 C -0.05 -1.73 9.52 22.27 0.21 -1.52 16 27 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 28 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.05 2.03 6.66 -2.38 -0.02 2.01 16 30 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.08 2.64 6.43 -2.39 -0.02 2.62 16 33 H 0.09 2.45 7.02 -2.39 -0.02 2.44 16 34 H 0.17 3.68 7.62 -2.91 -0.02 3.65 16 35 H 0.18 2.77 7.57 -2.91 -0.02 2.75 16 36 H 0.15 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.16 0.07 8.14 -2.39 -0.02 0.05 16 38 H 0.16 0.09 8.14 -2.39 -0.02 0.07 16 39 H 0.17 3.77 7.57 -2.91 -0.02 3.74 16 40 H 0.14 4.82 7.62 -2.91 -0.02 4.80 16 Total: -1.00 -77.97 358.42 -2.33 -80.30 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 1.06 Total: 12.24 kcal Atomic # 6 Polarization: -60.62 SS G_CDS: 5.02 Total: -55.60 kcal Atomic # 7 Polarization: -89.60 SS G_CDS: -1.35 Total: -90.95 kcal Atomic # 8 Polarization: -126.47 SS G_CDS: -8.44 Total: -134.90 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: 145.14 SS G_CDS: -0.65 Total: 144.49 kcal Total: -77.97 -2.33 -80.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103496522.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.471 kcal (2) G-P(sol) polarization free energy of solvation -77.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds