Wall clock time and date at job start Wed Apr 1 2020 04:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 C 1.76195 * 107.21884 * 89.99923 * 14 12 2 18 18 C 1.38259 * 120.00076 * 269.73011 * 17 14 12 19 19 C 1.38214 * 119.99943 * 179.81040 * 18 17 14 20 20 C 1.38254 * 119.99882 * 0.41735 * 19 18 17 21 21 C 1.38212 * 120.00344 * 359.81166 * 20 19 18 22 22 S 1.76198 * 120.00418 * 179.97438 * 21 20 19 23 23 C 1.81401 * 104.45153 * 270.02537 * 22 21 20 24 24 O 1.42103 * 104.27547 * 26.09770 * 22 21 20 25 25 O 1.42101 * 104.27840 * 153.95260 * 22 21 20 26 26 C 1.38213 * 120.00139 * 90.00186 * 17 14 12 27 27 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 29 29 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 32 32 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 33 33 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 34 34 H 1.07995 * 120.00117 * 359.97438 * 18 17 14 35 35 H 1.08002 * 120.00270 * 180.20862 * 19 18 17 36 36 H 1.08004 * 120.00304 * 179.79038 * 20 19 18 37 37 H 1.08997 * 109.47009 * 59.99781 * 23 22 21 38 38 H 1.08998 * 109.47109 * 180.02562 * 23 22 21 39 39 H 1.09004 * 109.46870 * 299.99971 * 23 22 21 40 40 H 1.08001 * 119.99828 * 359.97438 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 6 1.8960 0.8537 3.4711 18 6 1.4155 2.1336 3.2648 19 6 0.5697 2.7120 4.1922 20 6 0.2109 2.0141 5.3304 21 6 0.6949 0.7364 5.5390 22 16 0.2382 -0.1529 6.9900 23 6 1.5100 0.2836 8.2076 24 8 -1.0171 0.4010 7.3598 25 8 0.3545 -1.5186 6.6151 26 6 1.5380 0.1563 4.6094 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.7088 1.1611 -3.4845 31 1 2.4158 -2.7376 0.9718 32 1 1.6238 -2.2851 2.5003 33 1 0.6905 -2.3002 0.9847 34 1 1.6991 2.6803 2.3776 35 1 0.1916 3.7106 4.0294 36 1 -0.4474 2.4673 6.0569 37 1 1.5017 1.3612 8.3712 38 1 1.3043 -0.2286 9.1474 39 1 2.4886 -0.0198 7.8354 40 1 1.9165 -0.8419 4.7725 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103496559.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:58 Heat of formation + Delta-G solvation = -102.957924 kcal Electronic energy + Delta-G solvation = -27046.622302 eV Core-core repulsion = 23081.715719 eV Total energy + Delta-G solvation = -3964.906583 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -39.35779 -37.37902 -36.83903 -36.25055 -36.20913 -35.37729 -32.63508 -31.72409 -31.46775 -29.85766 -29.15031 -25.65873 -25.18817 -23.71191 -23.40892 -20.82394 -19.74998 -18.66753 -17.95198 -16.96307 -16.62880 -16.53367 -16.30011 -16.23658 -15.93926 -15.50753 -15.00155 -14.46383 -14.24006 -13.76446 -13.60540 -13.56222 -13.35216 -13.20764 -12.85913 -12.55240 -12.48842 -12.34943 -12.15444 -12.05913 -11.82670 -11.61179 -11.42596 -11.41568 -11.28045 -11.10306 -11.00282 -10.83963 -10.68533 -10.45410 -10.32230 -10.05804 -9.80228 -9.48055 -9.31508 -8.49016 -8.04761 -6.11080 -4.17757 -0.26608 0.42837 0.73993 0.91422 2.53350 2.95711 3.29397 3.33541 3.36790 3.54751 3.65313 3.80289 4.18091 4.36246 4.38749 4.40627 4.60979 4.63679 4.73915 4.88135 5.16695 5.20557 5.25375 5.34062 5.53191 5.54947 5.63020 5.85131 5.94301 6.13235 6.32182 6.48268 6.58546 6.71221 6.75593 6.94673 7.35466 7.57169 7.73189 7.98552 8.21812 8.84117 9.48141 10.94673 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.020479 B = 0.003310 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.894491 B = 8456.026376 C = 8582.367900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.266 3.734 3 H 0.061 0.939 4 C -0.520 4.520 5 H 0.064 0.936 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.900 3.100 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.977 5.977 13 C 0.104 3.896 14 S 2.680 3.320 15 O -0.969 6.969 16 O -0.948 6.948 17 C -0.692 4.692 18 C 0.038 3.962 19 C -0.158 4.158 20 C 0.019 3.981 21 C -0.686 4.686 22 S 2.502 3.498 23 C -0.651 4.651 24 O -0.937 6.937 25 O -0.932 6.932 26 C 0.070 3.930 27 H 0.036 0.964 28 H 0.009 0.991 29 H 0.095 0.905 30 H 0.264 0.736 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.151 0.849 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.283 2.516 19.458 19.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.163 3.837 3 H 0.078 0.922 4 C -0.560 4.560 5 H 0.082 0.918 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.728 3.272 9 H -0.212 1.212 10 H -0.201 1.201 11 H -0.202 1.202 12 N -0.818 5.818 13 C -0.042 4.042 14 S 2.768 3.232 15 O -0.959 6.959 16 O -0.938 6.938 17 C -0.775 4.775 18 C 0.019 3.981 19 C -0.178 4.178 20 C 0.000 4.000 21 C -0.773 4.773 22 S 2.681 3.319 23 C -0.801 4.801 24 O -0.935 6.935 25 O -0.929 6.929 26 C 0.050 3.950 27 H 0.055 0.945 28 H 0.029 0.971 29 H 0.113 0.887 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.169 0.831 35 H 0.160 0.840 36 H 0.164 0.836 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.190 2.167 19.423 19.580 hybrid contribution 0.180 0.400 -0.808 0.920 sum -1.010 2.567 18.615 18.818 Atomic orbital electron populations 1.22159 0.98190 1.00053 1.00677 1.18831 0.91376 0.93134 0.80311 0.92152 1.21269 1.31794 1.13119 0.89802 0.91789 1.24904 0.94893 0.95003 0.99004 1.69841 1.36405 1.22700 1.23980 0.86527 0.79359 0.79606 0.81751 1.21223 1.20100 1.20182 1.57427 1.70347 1.19691 1.34330 1.21268 1.02148 0.81447 0.99332 1.02450 0.74260 0.73663 0.72867 1.93525 1.68335 1.59016 1.75035 1.93586 1.73204 1.55984 1.71025 1.31812 1.22544 1.06949 1.16242 1.21389 0.87967 0.91691 0.97057 1.21449 0.99938 1.01361 0.95027 1.21180 0.91516 0.91002 0.96302 1.30662 1.14684 1.09689 1.22263 1.05168 0.76260 0.74856 0.75630 1.30239 1.19417 1.12963 1.17492 1.93585 1.37036 1.79674 1.83163 1.93614 1.86770 1.30932 1.81560 1.20721 0.87132 0.97800 0.89305 0.94489 0.97145 0.88651 0.92585 0.92655 0.92858 0.90599 0.83122 0.84015 0.83589 0.84953 0.84869 0.84662 0.82694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 8.95 37.16 0.33 -3.04 16 2 C 0.27 6.31 2.62 -69.09 -0.18 6.13 16 3 H 0.06 1.55 6.91 -51.92 -0.36 1.19 16 4 C -0.52 -13.67 8.37 -34.44 -0.29 -13.96 16 5 H 0.06 1.67 7.65 -52.49 -0.40 1.27 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.18 11.32 55.43 0.63 -23.55 16 8 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 9 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 N -0.98 -19.91 3.06 -115.86 -0.35 -20.26 16 13 C 0.10 1.85 9.53 59.85 0.57 2.42 16 14 S 2.68 50.96 5.64 -107.50 -0.61 50.36 16 15 O -0.97 -18.97 16.36 -57.17 -0.94 -19.91 16 16 O -0.95 -20.64 15.84 -57.17 -0.91 -21.55 16 17 C -0.69 -10.83 5.97 -39.58 -0.24 -11.06 16 18 C 0.04 0.54 9.52 -39.58 -0.38 0.16 16 19 C -0.16 -1.77 10.05 -39.58 -0.40 -2.17 16 20 C 0.02 0.20 9.47 -39.58 -0.37 -0.18 16 21 C -0.69 -7.84 5.66 -39.58 -0.22 -8.06 16 22 S 2.50 23.11 5.80 -107.50 -0.62 22.49 16 23 C -0.65 -3.07 10.80 101.05 1.09 -1.98 16 24 O -0.94 -10.89 17.13 -57.54 -0.99 -11.88 16 25 O -0.93 -11.91 17.13 -57.54 -0.99 -12.90 16 26 C 0.07 0.97 8.95 -39.58 -0.35 0.62 16 27 H 0.04 0.78 6.66 -51.93 -0.35 0.44 16 28 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.10 2.34 6.07 -51.93 -0.32 2.03 16 30 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.80 7.79 -51.93 -0.40 0.40 16 33 H 0.08 1.31 6.43 -51.93 -0.33 0.97 16 34 H 0.15 2.08 7.61 -52.49 -0.40 1.68 16 35 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.15 1.09 7.57 -52.48 -0.40 0.69 16 37 H 0.13 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.13 0.39 8.14 -51.92 -0.42 -0.03 16 39 H 0.13 0.53 8.14 -51.92 -0.42 0.11 16 40 H 0.16 1.99 7.13 -52.49 -0.37 1.61 16 LS Contribution 359.22 15.07 5.41 5.41 Total: -1.00 -35.76 359.22 -9.91 -45.68 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -5.00 Total: -0.13 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: -0.53 Total: -29.51 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.27 Total: -43.81 kcal Atomic # 8 Polarization: -62.42 SS G_CDS: -3.81 Total: -66.23 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 74.07 SS G_CDS: -1.23 Total: 72.84 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.76 -9.91 -45.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103496559.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.282 kcal (2) G-P(sol) polarization free energy of solvation -35.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds