Wall clock time and date at job start Wed Apr 1 2020 04:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 C 1.76195 * 107.21884 * 89.99923 * 14 12 2 18 18 C 1.38259 * 120.00076 * 269.73011 * 17 14 12 19 19 C 1.38214 * 119.99943 * 179.81040 * 18 17 14 20 20 C 1.38254 * 119.99882 * 0.41735 * 19 18 17 21 21 C 1.38212 * 120.00344 * 359.81166 * 20 19 18 22 22 S 1.76198 * 120.00418 * 179.97438 * 21 20 19 23 23 C 1.81401 * 104.45153 * 270.02537 * 22 21 20 24 24 O 1.42103 * 104.27547 * 26.09770 * 22 21 20 25 25 O 1.42101 * 104.27840 * 153.95260 * 22 21 20 26 26 C 1.38213 * 120.00139 * 90.00186 * 17 14 12 27 27 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 29 29 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 32 32 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 33 33 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 34 34 H 1.07995 * 120.00117 * 359.97438 * 18 17 14 35 35 H 1.08002 * 120.00270 * 180.20862 * 19 18 17 36 36 H 1.08004 * 120.00304 * 179.79038 * 20 19 18 37 37 H 1.08997 * 109.47009 * 59.99781 * 23 22 21 38 38 H 1.08998 * 109.47109 * 180.02562 * 23 22 21 39 39 H 1.09004 * 109.46870 * 299.99971 * 23 22 21 40 40 H 1.08001 * 119.99828 * 359.97438 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 6 1.8960 0.8537 3.4711 18 6 1.4155 2.1336 3.2648 19 6 0.5697 2.7120 4.1922 20 6 0.2109 2.0141 5.3304 21 6 0.6949 0.7364 5.5390 22 16 0.2382 -0.1529 6.9900 23 6 1.5100 0.2836 8.2076 24 8 -1.0171 0.4010 7.3598 25 8 0.3545 -1.5186 6.6151 26 6 1.5380 0.1563 4.6094 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.7088 1.1611 -3.4845 31 1 2.4158 -2.7376 0.9718 32 1 1.6238 -2.2851 2.5003 33 1 0.6905 -2.3002 0.9847 34 1 1.6991 2.6803 2.3776 35 1 0.1916 3.7106 4.0294 36 1 -0.4474 2.4673 6.0569 37 1 1.5017 1.3612 8.3712 38 1 1.3043 -0.2286 9.1474 39 1 2.4886 -0.0198 7.8354 40 1 1.9165 -0.8419 4.7725 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103496559.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:57 Heat of formation + Delta-G solvation = -130.734693 kcal Electronic energy + Delta-G solvation = -27047.826793 eV Core-core repulsion = 23081.715719 eV Total energy + Delta-G solvation = -3966.111074 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.33203 -38.43043 -38.18136 -37.95720 -37.01901 -36.96742 -34.55678 -32.70281 -32.44235 -30.95675 -30.27546 -27.32640 -27.05565 -24.71263 -24.40247 -22.58673 -20.78402 -19.68968 -19.26626 -18.61743 -18.28126 -17.43761 -17.30292 -17.18352 -17.07696 -16.91039 -16.43199 -15.87530 -15.29434 -15.13775 -14.82799 -14.69621 -14.37271 -13.99064 -13.94658 -13.76746 -13.53802 -13.52833 -13.41692 -13.21025 -13.17426 -13.16432 -13.02351 -13.01680 -12.80507 -12.62583 -12.33881 -12.21508 -12.17780 -12.01957 -11.88470 -11.62894 -11.19454 -10.83012 -10.51080 -10.43447 -9.71748 -8.12622 -6.25906 -0.93499 -0.70629 -0.47418 -0.19478 1.44122 1.45485 1.52604 1.78834 1.89203 2.21767 2.44010 2.72113 2.96535 3.08088 3.15983 3.27631 3.62546 3.79720 3.86294 4.03650 4.07854 4.11990 4.25790 4.38370 4.59593 4.64772 4.69037 4.79185 4.86091 4.94098 4.97252 4.98221 5.00901 5.08378 5.13897 5.55346 5.58767 5.67934 5.83208 6.08127 6.27260 6.80435 7.42772 8.91599 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.020479 B = 0.003310 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.894491 B = 8456.026376 C = 8582.367900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.271 3.729 3 H 0.034 0.966 4 C -0.540 4.540 5 H 0.058 0.942 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.955 3.045 9 H -0.281 1.281 10 H -0.278 1.278 11 H -0.268 1.268 12 N -0.989 5.989 13 C 0.096 3.904 14 S 2.687 3.313 15 O -0.982 6.982 16 O -0.987 6.987 17 C -0.700 4.700 18 C 0.014 3.986 19 C -0.151 4.151 20 C 0.027 3.973 21 C -0.684 4.684 22 S 2.508 3.492 23 C -0.625 4.625 24 O -0.963 6.963 25 O -0.975 6.975 26 C 0.055 3.945 27 H 0.042 0.958 28 H 0.030 0.970 29 H 0.071 0.929 30 H 0.265 0.735 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.142 0.858 35 H 0.176 0.824 36 H 0.184 0.816 37 H 0.161 0.839 38 H 0.160 0.840 39 H 0.149 0.851 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.934 2.970 22.154 22.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.167 3.833 3 H 0.052 0.948 4 C -0.579 4.579 5 H 0.076 0.924 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.781 3.219 9 H -0.207 1.207 10 H -0.203 1.203 11 H -0.193 1.193 12 N -0.828 5.828 13 C -0.049 4.049 14 S 2.781 3.219 15 O -0.972 6.972 16 O -0.977 6.977 17 C -0.789 4.789 18 C -0.006 4.006 19 C -0.170 4.170 20 C 0.008 3.992 21 C -0.769 4.769 22 S 2.689 3.311 23 C -0.779 4.779 24 O -0.960 6.960 25 O -0.972 6.972 26 C 0.035 3.965 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.160 0.840 35 H 0.194 0.806 36 H 0.201 0.799 37 H 0.179 0.821 38 H 0.178 0.822 39 H 0.167 0.833 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.833 2.579 22.031 22.257 hybrid contribution 0.376 0.323 -1.410 1.495 sum -1.457 2.902 20.621 20.875 Atomic orbital electron populations 1.21961 0.97105 1.00311 1.00452 1.18505 0.92082 0.91797 0.80936 0.94844 1.21597 1.31879 1.13190 0.91274 0.92381 1.25615 0.95142 0.95703 1.01555 1.69953 1.37097 1.23607 1.24488 0.85654 0.78532 0.78983 0.78734 1.20651 1.20338 1.19293 1.57314 1.70361 1.20822 1.34311 1.21450 1.02158 0.80160 1.01109 1.01756 0.74299 0.72972 0.72896 1.93493 1.69232 1.59543 1.74933 1.93530 1.74749 1.56936 1.72507 1.31070 1.23746 1.07961 1.16134 1.21503 0.89514 0.91441 0.98092 1.21844 0.98321 1.02700 0.94147 1.21718 0.90650 0.90411 0.96376 1.31065 1.13064 1.10107 1.22670 1.05034 0.76935 0.73523 0.75593 1.30059 1.16866 1.15280 1.15672 1.93549 1.39719 1.79643 1.83126 1.93562 1.87707 1.33327 1.82599 1.20844 0.88177 0.98135 0.89372 0.93891 0.95112 0.90990 0.92548 0.92995 0.90267 0.90235 0.83993 0.80629 0.79910 0.82076 0.82205 0.83275 0.82430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.30 8.95 71.98 0.64 -5.65 16 2 C 0.27 13.29 2.62 44.24 0.12 13.40 16 3 H 0.03 1.82 6.91 -2.38 -0.02 1.80 16 4 C -0.54 -29.16 8.37 25.60 0.21 -28.95 16 5 H 0.06 3.11 7.65 -2.91 -0.02 3.09 16 6 C 0.02 1.08 5.30 84.66 0.45 1.53 16 7 N -0.91 -50.62 11.32 21.45 0.24 -50.38 16 8 Si 0.96 43.08 29.54 68.60 2.03 45.10 16 9 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 12 N -0.99 -41.43 3.06 -520.46 -1.59 -43.03 16 13 C 0.10 3.46 9.53 127.77 1.22 4.68 16 14 S 2.69 105.70 5.64 -56.49 -0.32 105.38 16 15 O -0.98 -39.28 16.36 -128.00 -2.09 -41.38 16 16 O -0.99 -45.32 15.84 -128.00 -2.03 -47.35 16 17 C -0.70 -21.94 5.97 22.27 0.13 -21.81 16 18 C 0.01 0.39 9.52 22.27 0.21 0.60 16 19 C -0.15 -3.00 10.05 22.27 0.22 -2.77 16 20 C 0.03 0.47 9.47 22.27 0.21 0.68 16 21 C -0.68 -14.01 5.66 22.27 0.13 -13.88 16 22 S 2.51 39.69 5.80 -56.49 -0.33 39.36 16 23 C -0.62 -2.84 10.80 113.37 1.22 -1.62 16 24 O -0.96 -19.74 17.13 -127.65 -2.19 -21.93 16 25 O -0.97 -23.74 17.13 -127.65 -2.19 -25.93 16 26 C 0.05 1.46 8.95 22.27 0.20 1.66 16 27 H 0.04 1.84 6.66 -2.39 -0.02 1.82 16 28 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 30 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 31 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.08 2.38 7.79 -2.38 -0.02 2.36 16 33 H 0.08 2.75 6.43 -2.39 -0.02 2.74 16 34 H 0.14 4.10 7.61 -2.91 -0.02 4.08 16 35 H 0.18 2.21 8.06 -2.91 -0.02 2.19 16 36 H 0.18 1.84 7.57 -2.91 -0.02 1.82 16 37 H 0.16 -0.04 8.14 -2.39 -0.02 -0.06 16 38 H 0.16 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.15 0.46 8.14 -2.39 -0.02 0.45 16 40 H 0.16 3.99 7.13 -2.91 -0.02 3.97 16 Total: -1.00 -80.05 359.22 -2.43 -82.48 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 1.06 Total: 9.79 kcal Atomic # 6 Polarization: -57.10 SS G_CDS: 4.97 Total: -52.13 kcal Atomic # 7 Polarization: -92.06 SS G_CDS: -1.35 Total: -93.41 kcal Atomic # 8 Polarization: -128.09 SS G_CDS: -8.49 Total: -136.58 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: 145.39 SS G_CDS: -0.65 Total: 144.75 kcal Total: -80.05 -2.43 -82.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103496559.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.252 kcal (2) G-P(sol) polarization free energy of solvation -80.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds