Wall clock time and date at job start Wed Apr 1 2020 04:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99860 * 2 1 4 4 H 1.48503 * 109.47125 * 239.99887 * 3 2 1 5 5 H 1.48490 * 109.47341 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46960 * 120.00359 * 3 2 1 7 7 C 1.37876 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00330 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99678 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46613 * 179.97438 * 9 7 2 11 11 S 1.81400 * 109.46938 * 179.97438 * 10 9 7 12 12 O 1.42109 * 110.54035 * 68.37320 * 11 10 9 13 13 O 1.42092 * 110.54589 * 291.62692 * 11 10 9 14 14 N 1.65597 * 104.45029 * 179.97438 * 11 10 9 15 15 C 1.46502 * 119.99893 * 65.00955 * 14 11 10 16 16 C 1.52996 * 109.47434 * 165.00075 * 15 14 11 17 17 S 1.81403 * 109.47372 * 179.97438 * 16 15 14 18 18 C 1.81391 * 103.00140 * 179.97438 * 17 16 15 19 19 C 1.50698 * 109.47419 * 179.97438 * 18 17 16 20 20 C 1.38219 * 120.00966 * 89.99600 * 19 18 17 21 21 C 1.38227 * 120.02402 * 179.72409 * 20 19 18 22 22 C 1.38263 * 120.05156 * 0.30685 * 21 20 19 23 23 C 1.38177 * 120.02526 * 359.97438 * 22 21 20 24 24 C 1.38439 * 120.01637 * 270.30305 * 19 18 17 25 25 F 1.35105 * 120.02463 * 359.97438 * 24 19 18 26 26 H 0.97005 * 120.00108 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47565 * 59.99510 * 9 7 2 28 28 H 1.09005 * 109.46929 * 299.99209 * 9 7 2 29 29 H 1.09004 * 109.47423 * 59.99935 * 10 9 7 30 30 H 1.08999 * 109.47376 * 299.99595 * 10 9 7 31 31 H 0.97001 * 120.00407 * 244.99302 * 14 11 10 32 32 H 1.08998 * 109.47386 * 44.99188 * 15 14 11 33 33 H 1.09011 * 109.46583 * 284.99569 * 15 14 11 34 34 H 1.08998 * 109.47558 * 59.99219 * 16 15 14 35 35 H 1.09003 * 109.47106 * 299.99366 * 16 15 14 36 36 H 1.09004 * 109.47315 * 59.99767 * 18 17 16 37 37 H 1.08998 * 109.47391 * 299.99963 * 18 17 16 38 38 H 1.08002 * 119.99072 * 0.02562 * 20 19 18 39 39 H 1.07999 * 119.97012 * 180.27779 * 21 20 19 40 40 H 1.08004 * 119.99046 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.01271 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0005 11 16 1.3383 -5.2330 0.0013 12 8 0.6638 -5.4200 -1.2355 13 8 0.6647 -5.4193 1.2385 14 7 2.5204 -6.3927 0.0005 15 6 3.4195 -6.5229 1.1498 16 6 4.1505 -7.8649 1.0761 17 16 5.2644 -8.0258 2.4988 18 6 6.0264 -9.6512 2.2388 19 6 6.9954 -9.9365 3.3571 20 6 6.5612 -10.5801 4.5006 21 6 7.4511 -10.8470 5.5242 22 6 8.7748 -10.4650 5.4081 23 6 9.2098 -9.8163 4.2682 24 6 8.3193 -9.5485 3.2421 25 9 8.7435 -8.9142 2.1271 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 2.8719 -3.6043 0.8905 30 1 2.8718 -3.6043 -0.8895 31 1 2.6175 -6.9859 -0.7608 32 1 2.8400 -6.4749 2.0718 33 1 4.1473 -5.7114 1.1355 34 1 4.7300 -7.9128 0.1542 35 1 3.4228 -8.6763 1.0904 36 1 6.5586 -9.6550 1.2875 37 1 5.2515 -10.4177 2.2246 38 1 5.5275 -10.8789 4.5925 39 1 7.1119 -11.3539 6.4155 40 1 9.4691 -10.6737 6.2086 41 1 10.2439 -9.5184 4.1775 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111325777.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:39 Heat of formation + Delta-G solvation = -132.750401 kcal Electronic energy + Delta-G solvation = -24197.356394 eV Core-core repulsion = 20243.530701 eV Total energy + Delta-G solvation = -3953.825692 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.081 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.92455 -39.96263 -38.18956 -37.11078 -36.86272 -35.88620 -33.96232 -33.11773 -31.47313 -30.94807 -28.19486 -27.58498 -24.25764 -23.74189 -23.58667 -22.55586 -20.41614 -19.14862 -18.61047 -18.31128 -17.53207 -17.46583 -17.29600 -17.05910 -16.80206 -16.52948 -16.43397 -16.20961 -16.03852 -15.20032 -15.11257 -14.75428 -14.52626 -14.44779 -14.13811 -13.93590 -13.73045 -13.67488 -13.24920 -13.15978 -13.13287 -12.99053 -12.90450 -12.78921 -12.70798 -12.42427 -12.21941 -12.16007 -11.97821 -11.73738 -11.20659 -11.11487 -10.63522 -10.43275 -9.91283 -9.61712 -8.73021 -8.25620 -6.39401 -0.71860 -0.14163 0.23687 0.80999 1.40723 1.44099 1.51814 1.52244 1.93068 2.38193 2.69541 2.80294 3.07589 3.26888 3.27492 3.46009 3.65247 3.70058 3.91159 4.00694 4.01186 4.13932 4.21475 4.36909 4.38993 4.44974 4.46716 4.48969 4.69228 4.77980 4.91491 4.92867 5.09291 5.17898 5.28728 5.29639 5.35768 5.46630 5.68803 5.92690 6.06442 6.09197 6.73976 7.30468 8.86240 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.014303 B = 0.001963 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.218932 B =14261.325150 C =15460.585880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.005 4.005 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.540 4.540 8 H 0.075 0.925 9 C 0.019 3.981 10 C -0.590 4.590 11 S 2.628 3.372 12 O -0.995 6.995 13 O -0.996 6.996 14 N -1.104 6.104 15 C 0.123 3.877 16 C -0.087 4.087 17 S -0.274 6.274 18 C -0.037 4.037 19 C -0.124 4.124 20 C -0.079 4.079 21 C -0.130 4.130 22 C -0.084 4.084 23 C -0.165 4.165 24 C 0.088 3.912 25 F -0.148 7.148 26 H 0.267 0.733 27 H 0.008 0.992 28 H 0.008 0.992 29 H 0.140 0.860 30 H 0.144 0.856 31 H 0.427 0.573 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.150 0.850 39 H 0.158 0.842 40 H 0.161 0.839 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.867 -26.519 8.903 34.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.203 4.203 3 Si 0.797 3.203 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.093 0.907 9 C -0.020 4.020 10 C -0.722 4.722 11 S 2.724 3.276 12 O -0.986 6.986 13 O -0.986 6.986 14 N -0.866 5.866 15 C -0.004 4.004 16 C -0.237 4.237 17 S -0.046 6.046 18 C -0.184 4.184 19 C -0.126 4.126 20 C -0.099 4.099 21 C -0.148 4.148 22 C -0.103 4.103 23 C -0.183 4.183 24 C 0.067 3.933 25 F -0.126 7.126 26 H 0.076 0.924 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.158 0.842 30 H 0.162 0.838 31 H 0.264 0.736 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.112 0.888 37 H 0.134 0.866 38 H 0.168 0.832 39 H 0.175 0.825 40 H 0.179 0.821 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 18.892 -25.730 9.790 33.388 hybrid contribution 0.452 0.487 -1.708 1.833 sum 19.344 -25.243 8.082 32.813 Atomic orbital electron populations 1.70093 1.07993 1.28348 1.50821 1.26116 0.95891 1.03862 0.94451 0.85371 0.78135 0.77383 0.79404 1.18826 1.20950 1.18866 1.21492 0.93949 0.90881 1.51553 0.90723 1.18827 0.93633 0.93019 0.96479 1.30348 1.12831 1.16653 1.12333 1.04262 0.74422 0.76268 0.72657 1.93513 1.72829 1.85751 1.46464 1.93504 1.72641 1.85369 1.47075 1.55265 1.52128 1.51093 1.28157 1.21074 0.92931 0.97760 0.88590 1.23500 1.00263 1.00566 0.99372 1.87419 1.53521 1.26824 1.36805 1.22195 1.00293 0.96145 0.99800 1.19415 0.92003 1.03326 0.97902 1.21268 1.01328 0.95958 0.91319 1.21609 0.93260 1.00152 0.99739 1.21465 0.96821 0.95149 0.96861 1.21440 1.00669 1.02359 0.93852 1.17902 0.93419 0.97410 0.84570 1.91475 1.90488 1.79863 1.50811 0.92410 0.97367 0.97398 0.84194 0.83828 0.73568 0.90269 0.89631 0.87397 0.87794 0.88797 0.86552 0.83224 0.82469 0.82138 0.83443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 2 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 3 Si 0.97 43.66 29.54 68.60 2.03 45.69 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.54 -30.07 9.11 25.60 0.23 -29.84 16 8 H 0.07 3.84 7.74 -2.91 -0.02 3.82 16 9 C 0.02 1.01 4.98 29.85 0.15 1.16 16 10 C -0.59 -21.92 6.01 71.98 0.43 -21.49 16 11 S 2.63 90.24 5.46 -56.49 -0.31 89.93 16 12 O -1.00 -40.26 18.08 -127.65 -2.31 -42.57 16 13 O -1.00 -40.93 17.50 -127.65 -2.23 -43.16 16 14 N -1.10 -24.95 5.89 -187.48 -1.10 -26.05 16 15 C 0.12 2.53 6.14 86.38 0.53 3.06 16 16 C -0.09 -1.36 6.08 71.98 0.44 -0.92 16 17 S -0.27 -5.13 21.72 -56.49 -1.23 -6.36 16 18 C -0.04 -0.51 5.89 71.24 0.42 -0.10 16 19 C -0.12 -1.85 5.15 -19.82 -0.10 -1.95 16 20 C -0.08 -0.88 9.70 22.26 0.22 -0.66 16 21 C -0.13 -1.08 10.04 22.27 0.22 -0.85 16 22 C -0.08 -0.71 10.04 22.26 0.22 -0.49 16 23 C -0.16 -2.06 10.03 22.31 0.22 -1.83 16 24 C 0.09 1.48 7.24 22.37 0.16 1.65 16 25 F -0.15 -3.00 16.48 44.97 0.74 -2.26 16 26 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 27 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.01 0.43 8.14 -2.38 -0.02 0.42 16 29 H 0.14 4.57 8.14 -2.39 -0.02 4.55 16 30 H 0.14 4.65 8.14 -2.39 -0.02 4.63 16 31 H 0.43 7.36 8.62 -96.74 -0.83 6.53 16 32 H 0.08 1.85 7.70 -2.39 -0.02 1.83 16 33 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.09 1.29 7.65 -2.39 -0.02 1.27 16 37 H 0.12 1.12 8.09 -2.39 -0.02 1.10 16 38 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 39 H 0.16 0.47 8.06 -2.91 -0.02 0.44 16 40 H 0.16 0.42 8.06 -2.91 -0.02 0.40 16 41 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -79.59 382.46 -0.31 -79.90 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.21 Total: 13.73 kcal Atomic # 6 Polarization: -55.69 SS G_CDS: 3.61 Total: -52.08 kcal Atomic # 7 Polarization: -82.00 SS G_CDS: -0.82 Total: -82.82 kcal Atomic # 8 Polarization: -81.19 SS G_CDS: -4.54 Total: -85.73 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.74 Total: -2.26 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: 85.11 SS G_CDS: -1.54 Total: 83.57 kcal Total: -79.59 -0.31 -79.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111325777.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.855 kcal (2) G-P(sol) polarization free energy of solvation -79.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds