Wall clock time and date at job start Wed Apr 1 2020 04:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 116.99945 * 2 1 4 4 O 1.20823 * 119.99989 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00058 * 179.97438 * 3 2 1 6 6 N 1.46495 * 109.47270 * 180.02562 * 5 3 2 7 7 C 1.36841 * 119.99924 * 270.00023 * 6 5 3 8 8 H 1.08003 * 119.99542 * 130.86692 * 7 6 5 9 9 C 1.39033 * 120.00208 * 310.86213 * 7 6 5 10 10 N 1.31380 * 119.99775 * 353.47642 * 9 7 6 11 11 Si 1.86795 * 120.00244 * 173.46949 * 9 7 6 12 12 H 1.48503 * 109.46928 * 90.00440 * 11 9 7 13 13 H 1.48498 * 109.47473 * 210.00188 * 11 9 7 14 14 H 1.48498 * 109.46955 * 330.00697 * 11 9 7 15 15 C 1.34775 * 120.00061 * 89.99821 * 6 5 3 16 16 O 1.21739 * 119.99879 * 3.99698 * 15 6 5 17 17 C 1.46544 * 120.00118 * 183.99315 * 15 6 5 18 18 C 1.37075 * 126.13727 * 173.70604 * 17 15 6 19 19 N 1.30558 * 114.00406 * 180.02562 * 18 17 15 20 20 C 1.30323 * 117.33781 * 0.02562 * 19 18 17 21 21 C 1.47829 * 124.73493 * 180.02562 * 20 19 18 22 22 C 1.39528 * 119.74488 * 359.70194 * 21 20 19 23 23 C 1.38409 * 119.04710 * 179.75065 * 22 21 20 24 24 C 1.38772 * 118.52330 * 0.51642 * 23 22 21 25 25 C 1.38375 * 119.39231 * 359.72958 * 24 23 22 26 26 N 1.31663 * 120.91646 * 0.02562 * 25 24 23 27 27 S 1.70914 * 110.52373 * 359.97438 * 20 19 18 28 28 H 1.09004 * 109.46971 * 60.00146 * 1 2 3 29 29 H 1.08996 * 109.46859 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47208 * 300.00277 * 1 2 3 31 31 H 1.09000 * 109.47423 * 59.99858 * 5 3 2 32 32 H 1.09001 * 109.47195 * 300.00041 * 5 3 2 33 33 H 0.97007 * 120.00069 * 185.00470 * 10 9 7 34 34 H 1.08000 * 122.99373 * 359.97438 * 18 17 15 35 35 H 1.07997 * 120.47072 * 0.02562 * 22 21 20 36 36 H 1.08003 * 120.73487 * 180.26270 * 23 22 21 37 37 H 1.07999 * 120.30379 * 179.70582 * 24 23 22 38 38 H 1.08000 * 119.53844 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.1761 3.3361 -1.1838 8 1 3.7247 4.3039 -1.3453 9 6 4.9548 2.7573 -2.1796 10 7 5.6079 1.6432 -1.9383 11 14 5.0724 3.5636 -3.8604 12 1 6.2090 4.5191 -3.8727 13 1 5.2909 2.5212 -4.8953 14 1 3.8107 4.2914 -4.1496 15 6 4.1723 3.3257 1.1685 16 8 4.0704 2.7230 2.2213 17 6 4.5023 4.7535 1.1705 18 6 4.6028 5.5584 2.2755 19 7 4.9099 6.7978 2.0036 20 6 5.0786 7.1114 0.7500 21 6 5.4285 8.4612 0.2591 22 6 5.5944 9.5069 1.1679 23 6 5.9271 10.7636 0.6929 24 6 6.0728 10.9374 -0.6762 25 6 5.8885 9.8573 -1.5213 26 7 5.5771 8.6704 -1.0441 27 16 4.8400 5.7439 -0.2471 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.9564 0.7806 -0.8891 32 1 3.9557 0.7809 0.8908 33 1 6.2080 1.2781 -2.6074 34 1 4.4414 5.1994 3.2812 35 1 5.4693 9.3370 2.2270 36 1 6.0662 11.5915 1.3723 37 1 6.3273 11.9068 -1.0784 38 1 6.0017 9.9898 -2.5871 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120607645.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:39 Heat of formation + Delta-G solvation = -26.972923 kcal Electronic energy + Delta-G solvation = -27293.855226 eV Core-core repulsion = 23229.092400 eV Total energy + Delta-G solvation = -4064.762826 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.08867 -39.91999 -38.97214 -38.08769 -35.84253 -34.96451 -32.63907 -32.01984 -31.98918 -29.74353 -28.35146 -26.63702 -25.90218 -24.77367 -23.52631 -22.66068 -21.33729 -20.02792 -19.23569 -18.42790 -17.23295 -17.03288 -16.45834 -16.32195 -15.81596 -15.67593 -15.42563 -15.37395 -14.68717 -14.65467 -14.52512 -13.89572 -13.76576 -13.38313 -13.16015 -13.13426 -12.95071 -12.74636 -12.56125 -11.88768 -11.81624 -11.60385 -11.48531 -11.38332 -11.01973 -10.59213 -10.54709 -10.31481 -9.97958 -9.88456 -9.74346 -9.54070 -9.48759 -9.01707 -8.78689 -8.56508 -8.01802 -7.70373 -6.81951 -4.66842 0.42481 1.26771 1.55241 2.06837 2.61675 2.95795 2.97611 3.03857 3.07571 3.09629 3.30323 3.80519 3.93675 3.97509 4.19307 4.45326 4.65813 4.79229 4.81886 5.00365 5.12505 5.34791 5.39692 5.46360 5.53918 5.61808 5.80828 5.83061 5.87662 6.00990 6.07902 6.16345 6.26221 6.57612 6.64668 6.76282 6.92483 6.99708 7.49392 7.85695 7.92892 8.27631 8.46338 8.59385 8.99021 9.45134 10.19741 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013346 B = 0.003735 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.494141 B = 7494.968482 C = 8720.548049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.367 6.367 3 C 0.445 3.555 4 O -0.504 6.504 5 C 0.128 3.872 6 N -0.419 5.419 7 C -0.340 4.340 8 H 0.099 0.901 9 C 0.065 3.935 10 N -0.843 5.843 11 Si 0.908 3.092 12 H -0.260 1.260 13 H -0.273 1.273 14 H -0.257 1.257 15 C 0.562 3.438 16 O -0.582 6.582 17 C -0.257 4.257 18 C 0.079 3.921 19 N -0.473 5.473 20 C -0.043 4.043 21 C 0.209 3.791 22 C -0.134 4.134 23 C -0.079 4.079 24 C -0.178 4.178 25 C 0.106 3.894 26 N -0.477 5.477 27 S 0.356 5.644 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.145 0.855 32 H 0.107 0.893 33 H 0.283 0.717 34 H 0.178 0.822 35 H 0.144 0.856 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.340 8.482 -1.605 8.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.284 6.284 3 C 0.287 3.713 4 O -0.390 6.390 5 C 0.003 3.997 6 N -0.138 5.138 7 C -0.474 4.474 8 H 0.115 0.885 9 C -0.147 4.147 10 N -0.476 5.476 11 Si 0.732 3.268 12 H -0.185 1.185 13 H -0.198 1.198 14 H -0.181 1.181 15 C 0.352 3.648 16 O -0.468 6.468 17 C -0.383 4.383 18 C -0.083 4.083 19 N -0.189 5.189 20 C -0.309 4.309 21 C 0.072 3.928 22 C -0.157 4.157 23 C -0.105 4.105 24 C -0.199 4.199 25 C -0.053 4.053 26 N -0.187 5.187 27 S 0.621 5.379 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.162 0.838 32 H 0.125 0.875 33 H 0.094 0.906 34 H 0.195 0.805 35 H 0.162 0.838 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.516 7.919 -2.522 8.327 hybrid contribution -0.200 0.824 0.676 1.084 sum -0.716 8.743 -1.846 8.965 Atomic orbital electron populations 1.23105 0.77932 1.02707 1.02049 1.86542 1.22319 1.34639 1.84882 1.25240 0.93515 0.80952 0.71640 1.90594 1.67026 1.36406 1.44982 1.21045 0.84314 0.87023 1.07364 1.42731 1.57179 1.08990 1.04851 1.19340 1.32210 1.03448 0.92411 0.88473 1.25654 0.93216 0.95397 1.00452 1.69659 1.23264 1.18341 1.36331 0.86144 0.80523 0.79718 0.80453 1.18488 1.19795 1.18118 1.17073 0.79130 0.84432 0.84178 1.90692 1.57117 1.67392 1.31592 1.26319 1.14064 1.00298 0.97625 1.22059 1.00088 0.86533 0.99591 1.66171 1.15162 1.18934 1.18646 1.25806 1.08355 1.00699 0.96081 1.18601 0.95171 0.90364 0.88693 1.22173 0.99205 0.92456 1.01861 1.21558 0.96136 0.97082 0.95684 1.22195 1.02674 1.00599 0.94414 1.22681 0.94856 0.87314 1.00450 1.67526 1.12189 1.24790 1.14213 1.85297 1.53928 0.93374 1.05280 0.92422 0.88818 0.92480 0.83813 0.87539 0.90580 0.80458 0.83780 0.84693 0.84794 0.82363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.59 16 2 O -0.37 -6.80 10.57 -39.25 -0.41 -7.22 16 3 C 0.44 9.75 8.02 36.00 0.29 10.04 16 4 O -0.50 -12.30 16.18 -18.75 -0.30 -12.60 16 5 C 0.13 2.89 5.60 -5.20 -0.03 2.86 16 6 N -0.42 -10.30 1.93 -117.63 -0.23 -10.53 16 7 C -0.34 -8.17 6.94 -15.02 -0.10 -8.27 16 8 H 0.10 2.33 5.28 -31.76 -0.17 2.17 16 9 C 0.06 1.48 5.21 -17.45 -0.09 1.39 16 10 N -0.84 -19.78 11.45 55.50 0.64 -19.14 16 11 Si 0.91 17.93 29.56 -169.99 -5.03 12.90 16 12 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 13 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 14 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 15 C 0.56 14.09 7.60 -12.91 -0.10 13.99 16 16 O -0.58 -15.37 16.44 5.15 0.08 -15.28 16 17 C -0.26 -5.84 6.35 -36.66 -0.23 -6.07 16 18 C 0.08 1.65 11.17 -18.52 -0.21 1.44 16 19 N -0.47 -9.42 10.00 -11.97 -0.12 -9.53 16 20 C -0.04 -0.84 7.16 -14.27 -0.10 -0.94 16 21 C 0.21 3.57 6.75 -83.04 -0.56 3.01 16 22 C -0.13 -1.88 9.71 -39.04 -0.38 -2.26 16 23 C -0.08 -0.84 10.16 -39.32 -0.40 -1.24 16 24 C -0.18 -1.77 10.11 -39.33 -0.40 -2.17 16 25 C 0.11 1.28 11.18 -17.57 -0.20 1.08 16 26 N -0.48 -7.72 10.01 -9.84 -0.10 -7.82 16 27 S 0.36 7.38 18.21 -107.50 -1.96 5.43 16 28 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.82 8.13 -51.93 -0.42 0.39 16 31 H 0.14 3.25 5.86 -51.93 -0.30 2.94 16 32 H 0.11 2.35 7.37 -51.93 -0.38 1.96 16 33 H 0.28 6.19 8.32 -40.82 -0.34 5.85 16 34 H 0.18 3.40 8.06 -52.49 -0.42 2.98 16 35 H 0.14 1.97 7.78 -52.49 -0.41 1.56 16 36 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 353.42 15.07 5.33 5.33 Total: -1.00 -30.44 353.42 -6.90 -37.34 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -3.36 Total: 6.68 kcal Atomic # 6 Polarization: 15.89 SS G_CDS: -1.44 Total: 14.45 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 0.19 Total: -47.02 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.63 Total: -35.10 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Atomic # 16 Polarization: 7.38 SS G_CDS: -1.96 Total: 5.43 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.44 -6.90 -37.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120607645.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.363 kcal (2) G-P(sol) polarization free energy of solvation -30.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds