Wall clock time and date at job start Wed Apr 1 2020 04:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 116.99945 * 2 1 4 4 O 1.20823 * 119.99989 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00058 * 179.97438 * 3 2 1 6 6 N 1.46495 * 109.47270 * 180.02562 * 5 3 2 7 7 C 1.36841 * 119.99924 * 270.00023 * 6 5 3 8 8 H 1.08003 * 119.99542 * 130.86692 * 7 6 5 9 9 C 1.39033 * 120.00208 * 310.86213 * 7 6 5 10 10 N 1.31380 * 119.99775 * 353.47642 * 9 7 6 11 11 Si 1.86795 * 120.00244 * 173.46949 * 9 7 6 12 12 H 1.48503 * 109.46928 * 90.00440 * 11 9 7 13 13 H 1.48498 * 109.47473 * 210.00188 * 11 9 7 14 14 H 1.48498 * 109.46955 * 330.00697 * 11 9 7 15 15 C 1.34775 * 120.00061 * 89.99821 * 6 5 3 16 16 O 1.21739 * 119.99879 * 3.99698 * 15 6 5 17 17 C 1.46544 * 120.00118 * 183.99315 * 15 6 5 18 18 C 1.37075 * 126.13727 * 173.70604 * 17 15 6 19 19 N 1.30558 * 114.00406 * 180.02562 * 18 17 15 20 20 C 1.30323 * 117.33781 * 0.02562 * 19 18 17 21 21 C 1.47829 * 124.73493 * 180.02562 * 20 19 18 22 22 C 1.39528 * 119.74488 * 359.70194 * 21 20 19 23 23 C 1.38409 * 119.04710 * 179.75065 * 22 21 20 24 24 C 1.38772 * 118.52330 * 0.51642 * 23 22 21 25 25 C 1.38375 * 119.39231 * 359.72958 * 24 23 22 26 26 N 1.31663 * 120.91646 * 0.02562 * 25 24 23 27 27 S 1.70914 * 110.52373 * 359.97438 * 20 19 18 28 28 H 1.09004 * 109.46971 * 60.00146 * 1 2 3 29 29 H 1.08996 * 109.46859 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47208 * 300.00277 * 1 2 3 31 31 H 1.09000 * 109.47423 * 59.99858 * 5 3 2 32 32 H 1.09001 * 109.47195 * 300.00041 * 5 3 2 33 33 H 0.97007 * 120.00069 * 185.00470 * 10 9 7 34 34 H 1.08000 * 122.99373 * 359.97438 * 18 17 15 35 35 H 1.07997 * 120.47072 * 0.02562 * 22 21 20 36 36 H 1.08003 * 120.73487 * 180.26270 * 23 22 21 37 37 H 1.07999 * 120.30379 * 179.70582 * 24 23 22 38 38 H 1.08000 * 119.53844 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.1761 3.3361 -1.1838 8 1 3.7247 4.3039 -1.3453 9 6 4.9548 2.7573 -2.1796 10 7 5.6079 1.6432 -1.9383 11 14 5.0724 3.5636 -3.8604 12 1 6.2090 4.5191 -3.8727 13 1 5.2909 2.5212 -4.8953 14 1 3.8107 4.2914 -4.1496 15 6 4.1723 3.3257 1.1685 16 8 4.0704 2.7230 2.2213 17 6 4.5023 4.7535 1.1705 18 6 4.6028 5.5584 2.2755 19 7 4.9099 6.7978 2.0036 20 6 5.0786 7.1114 0.7500 21 6 5.4285 8.4612 0.2591 22 6 5.5944 9.5069 1.1679 23 6 5.9271 10.7636 0.6929 24 6 6.0728 10.9374 -0.6762 25 6 5.8885 9.8573 -1.5213 26 7 5.5771 8.6704 -1.0441 27 16 4.8400 5.7439 -0.2471 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.9564 0.7806 -0.8891 32 1 3.9557 0.7809 0.8908 33 1 6.2080 1.2781 -2.6074 34 1 4.4414 5.1994 3.2812 35 1 5.4693 9.3370 2.2270 36 1 6.0662 11.5915 1.3723 37 1 6.3273 11.9068 -1.0784 38 1 6.0017 9.9898 -2.5871 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120607645.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:39 Heat of formation + Delta-G solvation = -45.901549 kcal Electronic energy + Delta-G solvation = -27294.676033 eV Core-core repulsion = 23229.092400 eV Total energy + Delta-G solvation = -4065.583633 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.64866 -41.20546 -40.59155 -39.73483 -37.53116 -36.79166 -33.79862 -33.66496 -33.19047 -31.31969 -29.85578 -28.04463 -27.50331 -26.39792 -24.56330 -23.89551 -22.96187 -21.74361 -20.84731 -19.94800 -18.88923 -18.72388 -17.89018 -17.54197 -17.38286 -17.20933 -16.92113 -16.59619 -16.32094 -16.13614 -16.04811 -15.41334 -15.28198 -14.65008 -14.57597 -14.51299 -14.43193 -14.15512 -13.96263 -13.55732 -13.24911 -13.10719 -12.94624 -12.74439 -12.71682 -12.23230 -12.11477 -11.80092 -11.66193 -11.46290 -10.96084 -10.87159 -10.71937 -10.71560 -10.32186 -10.17546 -9.70861 -9.26483 -8.57165 -6.49658 -0.98028 0.25587 0.37849 0.45499 1.00978 1.21277 1.39762 1.42273 1.49050 1.53927 1.76776 2.16548 2.39690 2.63843 2.75846 2.88653 2.92229 3.81589 3.88156 3.99622 4.05147 4.11017 4.16494 4.24396 4.28732 4.31014 4.36938 4.47477 4.60248 4.64337 4.76546 4.87478 5.12235 5.17220 5.20256 5.27404 5.30707 5.68045 5.74035 6.07355 6.63940 6.77026 6.79451 6.93279 7.14392 7.61543 8.46608 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013346 B = 0.003735 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.494141 B = 7494.968482 C = 8720.548049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.451 3.549 4 O -0.534 6.534 5 C 0.126 3.874 6 N -0.426 5.426 7 C -0.360 4.360 8 H 0.095 0.905 9 C 0.037 3.963 10 N -0.866 5.866 11 Si 0.957 3.043 12 H -0.254 1.254 13 H -0.262 1.262 14 H -0.258 1.258 15 C 0.549 3.451 16 O -0.612 6.612 17 C -0.299 4.299 18 C 0.090 3.910 19 N -0.481 5.481 20 C -0.016 4.016 21 C 0.160 3.840 22 C -0.136 4.136 23 C -0.073 4.073 24 C -0.148 4.148 25 C 0.094 3.906 26 N -0.507 5.507 27 S 0.344 5.656 28 H 0.059 0.941 29 H 0.140 0.860 30 H 0.055 0.945 31 H 0.143 0.857 32 H 0.104 0.896 33 H 0.289 0.711 34 H 0.188 0.812 35 H 0.141 0.859 36 H 0.176 0.824 37 H 0.182 0.818 38 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.114 11.542 -2.936 11.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.294 3.706 4 O -0.423 6.423 5 C 0.001 3.999 6 N -0.143 5.143 7 C -0.493 4.493 8 H 0.111 0.889 9 C -0.173 4.173 10 N -0.499 5.499 11 Si 0.777 3.223 12 H -0.178 1.178 13 H -0.187 1.187 14 H -0.181 1.181 15 C 0.340 3.660 16 O -0.501 6.501 17 C -0.424 4.424 18 C -0.072 4.072 19 N -0.197 5.197 20 C -0.284 4.284 21 C 0.024 3.976 22 C -0.159 4.159 23 C -0.098 4.098 24 C -0.169 4.169 25 C -0.065 4.065 26 N -0.218 5.218 27 S 0.610 5.390 28 H 0.077 0.923 29 H 0.158 0.842 30 H 0.074 0.926 31 H 0.160 0.840 32 H 0.122 0.878 33 H 0.100 0.900 34 H 0.205 0.795 35 H 0.159 0.841 36 H 0.193 0.807 37 H 0.199 0.801 38 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -0.078 10.909 -3.867 11.575 hybrid contribution -0.326 0.134 1.080 1.136 sum -0.404 11.044 -2.787 11.397 Atomic orbital electron populations 1.23535 0.75106 1.05760 1.02096 1.86507 1.24950 1.32482 1.84057 1.24953 0.93229 0.81427 0.70986 1.90571 1.67573 1.37582 1.46601 1.21021 0.85297 0.86508 1.07092 1.42895 1.56970 1.09483 1.04994 1.19493 1.33260 1.03947 0.92565 0.88862 1.26283 0.92499 0.95685 1.02812 1.69709 1.23687 1.19102 1.37446 0.85441 0.80550 0.79304 0.77030 1.17778 1.18651 1.18129 1.17457 0.79016 0.85463 0.84063 1.90631 1.58770 1.68331 1.32334 1.26162 1.17392 0.99822 0.99073 1.22296 0.98535 0.86675 0.99715 1.66276 1.16432 1.18218 1.18784 1.26322 1.04992 1.01702 0.95388 1.18530 0.99365 0.89680 0.89997 1.22281 0.99021 0.93282 1.01348 1.22038 0.94339 0.96513 0.96934 1.22741 0.98709 1.01718 0.93724 1.23354 0.94094 0.86682 1.02389 1.67433 1.13151 1.27320 1.13926 1.85065 1.54919 0.93768 1.05251 0.92265 0.84239 0.92636 0.83957 0.87769 0.90009 0.79499 0.84080 0.80705 0.80110 0.79397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 10.56 113.37 1.20 1.97 16 2 O -0.36 -13.51 10.57 -51.39 -0.54 -14.05 16 3 C 0.45 20.41 8.02 71.24 0.57 20.98 16 4 O -0.53 -27.01 16.18 21.97 0.36 -26.66 16 5 C 0.13 5.96 5.60 85.63 0.48 6.44 16 6 N -0.43 -21.98 1.93 -644.29 -1.24 -23.22 16 7 C -0.36 -17.97 6.94 84.10 0.58 -17.38 16 8 H 0.09 4.68 5.28 -16.09 -0.08 4.60 16 9 C 0.04 1.71 5.21 84.95 0.44 2.16 16 10 N -0.87 -41.55 11.45 21.68 0.25 -41.31 16 11 Si 0.96 36.68 29.56 68.60 2.03 38.70 16 12 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 13 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 14 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 15 C 0.55 29.10 7.60 86.41 0.66 29.76 16 16 O -0.61 -34.16 16.44 -4.47 -0.07 -34.23 16 17 C -0.30 -14.28 6.35 24.16 0.15 -14.13 16 18 C 0.09 3.90 11.17 84.61 0.94 4.84 16 19 N -0.48 -19.53 10.00 -191.79 -1.92 -21.45 16 20 C -0.02 -0.65 7.16 87.46 0.63 -0.02 16 21 C 0.16 5.33 6.75 41.85 0.28 5.62 16 22 C -0.14 -3.53 9.71 22.62 0.22 -3.31 16 23 C -0.07 -1.22 10.16 22.44 0.23 -0.99 16 24 C -0.15 -2.15 10.11 22.43 0.23 -1.92 16 25 C 0.09 1.93 11.18 84.75 0.95 2.87 16 26 N -0.51 -15.65 10.01 -185.05 -1.85 -17.51 16 27 S 0.34 14.80 18.21 -56.49 -1.03 13.77 16 28 H 0.06 1.63 8.13 -2.38 -0.02 1.61 16 29 H 0.14 2.55 8.14 -2.39 -0.02 2.54 16 30 H 0.05 1.56 8.13 -2.39 -0.02 1.54 16 31 H 0.14 6.72 5.86 -2.39 -0.01 6.70 16 32 H 0.10 4.88 7.37 -2.39 -0.02 4.86 16 33 H 0.29 12.78 8.32 -92.70 -0.77 12.01 16 34 H 0.19 7.49 8.06 -2.91 -0.02 7.47 16 35 H 0.14 3.67 7.78 -2.91 -0.02 3.64 16 36 H 0.18 1.57 8.06 -2.91 -0.02 1.54 16 37 H 0.18 1.01 8.06 -2.91 -0.02 0.98 16 38 H 0.19 2.56 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -70.21 353.42 4.59 -65.62 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 1.06 Total: 23.43 kcal Atomic # 6 Polarization: 29.33 SS G_CDS: 7.56 Total: 36.89 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -4.77 Total: -103.48 kcal Atomic # 8 Polarization: -74.68 SS G_CDS: -0.26 Total: -74.94 kcal Atomic # 14 Polarization: 36.68 SS G_CDS: 2.03 Total: 38.70 kcal Atomic # 16 Polarization: 14.80 SS G_CDS: -1.03 Total: 13.77 kcal Total: -70.21 4.59 -65.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120607645.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.716 kcal (2) G-P(sol) polarization free energy of solvation -70.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds