Wall clock time and date at job start Wed Apr 1 2020 04:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00175 * 2 1 4 4 H 1.48499 * 109.47163 * 240.00437 * 3 2 1 5 5 H 1.48508 * 109.47046 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47167 * 119.99956 * 3 2 1 7 7 C 1.37881 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99779 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99896 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47313 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47579 * 179.97438 * 10 9 7 12 12 S 1.81392 * 109.47382 * 179.97438 * 11 10 9 13 13 O 1.42101 * 110.54654 * 68.37671 * 12 11 10 14 14 O 1.42105 * 110.54451 * 291.62551 * 12 11 10 15 15 N 1.65607 * 104.45216 * 180.02562 * 12 11 10 16 16 C 1.46502 * 119.99708 * 64.99827 * 15 12 11 17 17 C 1.53001 * 109.46986 * 165.00317 * 16 15 12 18 18 H 1.09001 * 109.46925 * 305.00041 * 17 16 15 19 19 O 1.42894 * 109.47064 * 65.00164 * 17 16 15 20 20 C 1.50702 * 109.47148 * 185.00455 * 17 16 15 21 21 C 1.38237 * 120.00143 * 265.02071 * 20 17 16 22 22 C 1.38221 * 120.01233 * 179.97438 * 21 20 17 23 23 C 1.38263 * 120.02714 * 359.97438 * 22 21 20 24 24 C 1.38195 * 120.01003 * 359.97438 * 23 22 21 25 25 C 1.38326 * 120.01026 * 84.99671 * 20 17 16 26 26 Cl 1.73600 * 120.01508 * 0.02562 * 25 20 17 27 27 H 0.96990 * 119.99882 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47723 * 59.99708 * 9 7 2 29 29 H 1.09003 * 109.46856 * 299.99490 * 9 7 2 30 30 H 1.09006 * 109.47520 * 59.99362 * 10 9 7 31 31 H 1.09003 * 109.46831 * 299.99612 * 10 9 7 32 32 H 1.09000 * 109.46679 * 59.99864 * 11 10 9 33 33 H 1.09003 * 109.47126 * 299.99925 * 11 10 9 34 34 H 0.96996 * 120.00308 * 245.00173 * 15 12 11 35 35 H 1.09005 * 109.47011 * 45.00431 * 16 15 12 36 36 H 1.09000 * 109.47242 * 285.00550 * 16 15 12 37 37 H 0.96692 * 114.00683 * 60.00056 * 19 17 16 38 38 H 1.08003 * 119.99824 * 359.95431 * 21 20 17 39 39 H 1.08002 * 119.98422 * 180.02562 * 22 21 20 40 40 H 1.07999 * 119.99487 * 180.27557 * 23 22 21 41 41 H 1.07996 * 120.00042 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4803 -4.9871 -0.0033 12 16 2.6591 -6.3658 -0.0053 13 8 3.3567 -6.4273 1.2311 14 8 3.3550 -6.4252 -1.2428 15 7 1.7087 -7.7221 -0.0064 16 6 0.8488 -8.0129 -1.1563 17 6 0.3753 -9.4660 -1.0844 18 1 1.2393 -10.1264 -1.0098 19 8 -0.4574 -9.6394 0.0638 20 6 -0.4073 -9.8015 -2.3279 21 6 -1.7857 -9.6980 -2.3260 22 6 -2.5037 -10.0051 -3.4665 23 6 -1.8436 -10.4154 -4.6100 24 6 -0.4655 -10.5182 -4.6134 25 6 0.2536 -10.2125 -3.4714 26 17 1.9847 -10.3428 -3.4746 27 1 -0.4849 0.8400 0.0004 28 1 0.6247 -2.5564 -0.8919 29 1 0.6242 -2.5575 0.8881 30 1 2.8721 -3.6052 0.8873 31 1 2.8719 -3.6036 -0.8927 32 1 0.8534 -5.0443 -0.8931 33 1 0.8540 -5.0454 0.8869 34 1 1.7214 -8.3239 0.7542 35 1 1.4101 -7.8588 -2.0779 36 1 -0.0149 -7.3482 -1.1415 37 1 -1.2472 -9.0817 0.0647 38 1 -2.3019 -9.3774 -1.4331 39 1 -3.5806 -9.9237 -3.4646 40 1 -2.4048 -10.6510 -5.5022 41 1 0.0499 -10.8384 -5.5068 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120902057.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:02 Heat of formation + Delta-G solvation = -120.950760 kcal Electronic energy + Delta-G solvation = -25444.914279 eV Core-core repulsion = 21477.183761 eV Total energy + Delta-G solvation = -3967.730517 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.32329 -37.83288 -36.88800 -36.82599 -35.75926 -34.69432 -34.68496 -32.19903 -32.09342 -31.21329 -28.04085 -27.82253 -24.04415 -23.73712 -23.13969 -21.72983 -20.66822 -19.25294 -18.33678 -17.63374 -16.98825 -16.74515 -16.53459 -16.02685 -15.74397 -15.43344 -15.10570 -14.74837 -14.49105 -14.42885 -14.29270 -14.08677 -13.86006 -13.12440 -12.59212 -12.48786 -12.29037 -12.13212 -12.03321 -11.94448 -11.88860 -11.82583 -11.77797 -11.72975 -11.24310 -11.15910 -10.90524 -10.88323 -10.63160 -10.45446 -9.96205 -9.78875 -9.42526 -9.34105 -9.15247 -9.09150 -8.41489 -6.06841 -4.09877 0.42723 0.64965 0.74967 1.72759 2.78960 3.10950 3.31599 3.35321 3.38705 3.86928 3.91783 4.02679 4.26588 4.36285 4.41500 4.42212 4.50565 4.68138 4.82125 4.89210 5.05375 5.12268 5.16466 5.24592 5.29733 5.31723 5.41723 5.60557 5.72869 5.85152 5.87602 5.91988 6.25424 6.27043 6.43164 6.85024 6.89151 7.11169 7.55136 7.65263 7.91112 8.31665 8.96123 9.54844 11.04399 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013708 B = 0.002456 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.095379 B =11398.066115 C =12166.665505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.106 4.106 11 C -0.609 4.609 12 S 2.599 3.401 13 O -0.961 6.961 14 O -0.960 6.960 15 N -1.119 6.119 16 C 0.088 3.912 17 C 0.142 3.858 18 H 0.124 0.876 19 O -0.546 6.546 20 C -0.112 4.112 21 C -0.098 4.098 22 C -0.111 4.111 23 C -0.106 4.106 24 C -0.107 4.107 25 C -0.028 4.028 26 Cl -0.057 7.057 27 H 0.262 0.738 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.419 0.581 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.377 0.623 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.548 -25.211 -7.326 27.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.146 4.146 11 C -0.741 4.741 12 S 2.695 3.305 13 O -0.951 6.951 14 O -0.950 6.950 15 N -0.878 5.878 16 C -0.039 4.039 17 C 0.081 3.919 18 H 0.141 0.859 19 O -0.352 6.352 20 C -0.114 4.114 21 C -0.116 4.116 22 C -0.129 4.129 23 C -0.124 4.124 24 C -0.126 4.126 25 C -0.055 4.055 26 Cl -0.028 7.028 27 H 0.072 0.928 28 H 0.038 0.962 29 H 0.039 0.961 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.254 0.746 35 H 0.111 0.889 36 H 0.091 0.909 37 H 0.225 0.775 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.123 -25.436 -7.328 26.961 hybrid contribution -0.664 1.292 0.011 1.453 sum -5.787 -24.144 -7.317 25.883 Atomic orbital electron populations 1.69944 1.06092 1.26900 1.50547 1.25017 0.94891 0.99365 0.95067 0.86611 0.79576 0.82790 0.78787 1.20104 1.21241 1.20103 1.21222 0.93241 0.90908 1.51170 0.92406 1.19052 0.93511 0.90441 0.97685 1.21506 0.99407 0.91634 1.02019 1.30547 1.16416 1.15969 1.11153 1.05352 0.75635 0.75200 0.74280 1.93585 1.70550 1.85829 1.45164 1.93574 1.70203 1.85661 1.45562 1.55623 1.61970 1.42736 1.27462 1.21944 0.95259 0.96578 0.90133 1.21036 0.92701 0.95987 0.82176 0.85863 1.86666 1.38867 1.67436 1.42245 1.20308 0.94752 1.01172 0.95141 1.20899 0.92285 0.99387 0.99002 1.21264 1.00574 0.98326 0.92740 1.21202 0.93596 0.98810 0.98769 1.21109 0.94307 1.00060 0.97121 1.20815 0.85415 1.03765 0.95522 1.98415 1.09468 1.96425 1.98498 0.92840 0.96169 0.96119 0.91530 0.91542 0.85641 0.85215 0.74598 0.88915 0.90911 0.77452 0.84821 0.85015 0.84870 0.84607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.53 -14.83 9.11 -34.44 -0.31 -15.14 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.79 4.97 -27.89 -0.14 0.65 16 10 C -0.11 -2.15 5.16 -26.74 -0.14 -2.28 16 11 C -0.61 -9.20 6.07 37.16 0.23 -8.98 16 12 S 2.60 38.16 5.46 -107.50 -0.59 37.57 16 13 O -0.96 -17.02 18.08 -57.54 -1.04 -18.06 16 14 O -0.96 -16.88 17.49 -57.54 -1.01 -17.89 16 15 N -1.12 -12.09 5.85 -10.61 -0.06 -12.15 16 16 C 0.09 0.83 5.75 -4.04 -0.02 0.81 16 17 C 0.14 1.20 2.81 -27.88 -0.08 1.12 16 18 H 0.12 1.14 7.12 -51.93 -0.37 0.77 16 19 O -0.55 -4.20 12.79 -35.23 -0.45 -4.65 16 20 C -0.11 -0.90 5.07 -104.59 -0.53 -1.43 16 21 C -0.10 -0.62 9.30 -39.59 -0.37 -0.99 16 22 C -0.11 -0.64 10.05 -39.58 -0.40 -1.04 16 23 C -0.11 -0.62 10.05 -39.59 -0.40 -1.02 16 24 C -0.11 -0.77 9.83 -39.55 -0.39 -1.16 16 25 C -0.03 -0.25 6.31 -39.50 -0.25 -0.49 16 26 Cl -0.06 -0.55 27.21 -51.86 -1.41 -1.96 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.13 1.66 8.14 -51.92 -0.42 1.24 16 33 H 0.13 1.74 8.14 -51.92 -0.42 1.32 16 34 H 0.42 4.00 8.47 -34.48 -0.29 3.71 16 35 H 0.09 0.98 7.50 -51.93 -0.39 0.59 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.38 1.64 7.32 45.56 0.33 1.98 16 38 H 0.13 0.54 6.41 -52.48 -0.34 0.20 16 39 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 40 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 41 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 375.03 15.07 5.65 5.65 Total: -1.00 -36.32 375.03 -10.91 -47.23 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -4.82 Total: 1.86 kcal Atomic # 6 Polarization: -25.51 SS G_CDS: -2.90 Total: -28.41 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.67 Total: -37.88 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -2.50 Total: -40.60 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 38.16 SS G_CDS: -0.59 Total: 37.57 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.41 Total: -1.96 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.32 -10.91 -47.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120902057.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.724 kcal (2) G-P(sol) polarization free energy of solvation -36.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds