Wall clock time and date at job start Wed Apr 1 2020 04:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46980 * 196.10397 * 3 2 1 5 5 C 1.37094 * 119.99787 * 97.94482 * 4 3 2 6 6 H 1.07998 * 119.99937 * 220.49629 * 5 4 3 7 7 C 1.38951 * 120.00262 * 40.49163 * 5 4 3 8 8 N 1.31410 * 120.00180 * 3.11840 * 7 5 4 9 9 Si 1.86809 * 119.99941 * 183.11337 * 7 5 4 10 10 H 1.48495 * 109.46901 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.47121 * 300.00598 * 9 7 5 12 12 H 1.48498 * 109.46523 * 60.00404 * 9 7 5 13 13 C 1.34774 * 119.99918 * 277.94015 * 4 3 2 14 14 O 1.21293 * 119.99953 * 177.48877 * 13 4 3 15 15 C 1.50699 * 120.00031 * 357.48693 * 13 4 3 16 16 H 1.08994 * 110.43393 * 42.31588 * 15 13 4 17 17 C 1.54633 * 110.48663 * 164.99651 * 15 13 4 18 18 C 1.54471 * 101.76448 * 143.47689 * 17 15 13 19 19 N 1.46764 * 105.47639 * 334.58593 * 18 17 15 20 20 C 1.39975 * 124.35446 * 196.99677 * 19 18 17 21 21 C 1.38858 * 120.05995 * 186.17275 * 20 19 18 22 22 C 1.38108 * 119.94202 * 179.76566 * 21 20 19 23 23 C 1.38387 * 120.05547 * 0.50936 * 22 21 20 24 24 Cl 1.73605 * 119.94213 * 179.76581 * 23 22 21 25 25 C 1.38386 * 120.11740 * 359.74121 * 23 22 21 26 26 C 1.38102 * 120.05202 * 0.02562 * 25 23 22 27 27 C 1.34424 * 111.29974 * 17.01481 * 19 18 17 28 28 O 1.21290 * 124.94098 * 179.55816 * 27 19 18 29 29 H 1.09002 * 109.47234 * 76.10162 * 3 2 1 30 30 H 1.09002 * 109.47062 * 316.10731 * 3 2 1 31 31 H 0.96998 * 120.00374 * 179.97438 * 8 7 5 32 32 H 1.08997 * 110.96748 * 261.60103 * 17 15 13 33 33 H 1.09005 * 110.96308 * 25.36040 * 17 15 13 34 34 H 1.09001 * 110.25080 * 215.58959 * 18 17 15 35 35 H 1.08996 * 110.32288 * 93.62308 * 18 17 15 36 36 H 1.07999 * 120.02856 * 0.02562 * 21 20 19 37 37 H 1.08000 * 119.97210 * 180.27206 * 22 21 20 38 38 H 1.07991 * 119.96993 * 180.02562 * 25 23 22 39 39 H 1.08002 * 120.02594 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.3279 0.3831 5 6 3.4788 1.5702 1.6770 6 1 3.2211 2.5062 2.1501 7 6 4.1985 0.6116 2.3796 8 7 4.5650 -0.5015 1.7850 9 14 4.6453 0.9052 4.1696 10 1 5.4082 -0.2591 4.6867 11 1 5.4783 2.1298 4.2774 12 1 3.4047 1.0785 4.9672 13 6 3.1679 2.3106 -0.5364 14 8 3.5283 3.4217 -0.2096 15 6 2.8008 2.0290 -1.9706 16 1 1.9030 1.4130 -2.0196 17 6 2.5965 3.3509 -2.7465 18 6 3.1706 2.9929 -4.1352 19 7 4.1360 1.9141 -3.8936 20 6 5.1254 1.5214 -4.8025 21 6 5.9098 0.4066 -4.5380 22 6 6.8821 0.0184 -5.4388 23 6 7.0820 0.7456 -6.5991 24 17 8.3091 0.2586 -7.7264 25 6 6.3051 1.8601 -6.8626 26 6 5.3283 2.2496 -5.9674 27 6 3.9477 1.3514 -2.6874 28 8 4.6018 0.4335 -2.2394 29 1 2.9715 -0.2460 -0.9976 30 1 2.9717 -0.7398 0.7125 31 1 5.0677 -1.1706 2.2754 32 1 1.5384 3.6034 -2.8150 33 1 3.1611 4.1631 -2.2886 34 1 3.6721 3.8573 -4.5704 35 1 2.3756 2.6466 -4.7956 36 1 5.7569 -0.1590 -3.6307 37 1 7.4895 -0.8512 -5.2357 38 1 6.4628 2.4256 -7.7690 39 1 4.7220 3.1193 -6.1737 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126540039.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:28 Heat of formation + Delta-G solvation = 3.622461 kcal Electronic energy + Delta-G solvation = -27808.191201 eV Core-core repulsion = 23742.711384 eV Total energy + Delta-G solvation = -4065.479817 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.33193 -39.27697 -38.19791 -36.76187 -36.43449 -35.98298 -34.66346 -33.00086 -31.83295 -31.23324 -29.05133 -28.13482 -27.45569 -24.99226 -23.42041 -23.28548 -21.67260 -20.37734 -18.98439 -18.02470 -17.73826 -17.31520 -16.84753 -16.33398 -16.07359 -15.38918 -15.18676 -14.73754 -14.50356 -14.18938 -14.00629 -13.79008 -13.66796 -13.51320 -13.31049 -13.23215 -12.83104 -12.78394 -12.21514 -12.13199 -12.03606 -11.89930 -11.72328 -11.69172 -11.36570 -11.19561 -11.06325 -10.96718 -10.76165 -10.58862 -10.44220 -10.04666 -9.52234 -9.21077 -9.11371 -8.88317 -7.96720 -7.83079 -6.45843 -4.26547 0.95900 1.15342 2.03929 2.47062 2.68485 3.12900 3.16413 3.20642 3.25998 3.40042 3.49417 3.60643 4.01544 4.31466 4.34544 4.53127 4.67748 4.69299 4.75311 4.90621 4.98465 5.05243 5.16894 5.22538 5.26913 5.37368 5.40915 5.60920 5.78625 5.83584 5.87256 6.02846 6.16063 6.16242 6.18497 6.33552 6.84596 6.89669 6.94453 7.43283 7.96921 8.05262 8.17669 8.23359 8.88814 9.08866 9.62255 10.56177 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013746 B = 0.003061 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.538473 B = 9146.623019 C =10038.783482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.204 3.796 3 C 0.171 3.829 4 N -0.423 5.423 5 C -0.312 4.312 6 H 0.096 0.904 7 C 0.041 3.959 8 N -0.872 5.872 9 Si 0.930 3.070 10 H -0.281 1.281 11 H -0.270 1.270 12 H -0.272 1.272 13 C 0.486 3.514 14 O -0.556 6.556 15 C -0.147 4.147 16 H 0.120 0.880 17 C -0.117 4.117 18 C 0.097 3.903 19 N -0.562 5.562 20 C 0.184 3.816 21 C -0.146 4.146 22 C -0.077 4.077 23 C -0.067 4.067 24 Cl -0.080 7.080 25 C -0.082 4.082 26 C -0.152 4.152 27 C 0.532 3.468 28 O -0.471 6.471 29 H 0.104 0.896 30 H 0.170 0.830 31 H 0.276 0.724 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.168 0.832 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.052 2.110 -16.927 17.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.114 4.114 3 C 0.044 3.956 4 N -0.141 5.141 5 C -0.439 4.439 6 H 0.113 0.887 7 C -0.163 4.163 8 N -0.510 5.510 9 Si 0.756 3.244 10 H -0.206 1.206 11 H -0.195 1.195 12 H -0.198 1.198 13 C 0.272 3.728 14 O -0.437 6.437 15 C -0.172 4.172 16 H 0.138 0.862 17 C -0.155 4.155 18 C -0.025 4.025 19 N -0.285 5.285 20 C 0.089 3.911 21 C -0.166 4.166 22 C -0.097 4.097 23 C -0.095 4.095 24 Cl -0.051 7.051 25 C -0.101 4.101 26 C -0.173 4.173 27 C 0.319 3.681 28 O -0.343 6.343 29 H 0.122 0.878 30 H 0.187 0.813 31 H 0.087 0.913 32 H 0.114 0.886 33 H 0.126 0.874 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.185 0.815 37 H 0.155 0.845 38 H 0.152 0.848 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.114 1.942 -16.478 16.630 hybrid contribution 0.677 -0.061 0.582 0.895 sum 1.791 1.881 -15.896 16.107 Atomic orbital electron populations 1.81020 1.13624 1.09301 1.10923 1.30977 0.96595 0.92283 0.91542 1.19861 0.77796 0.92125 1.05854 1.43105 1.54647 1.07739 1.08652 1.19480 1.33140 1.04494 0.86809 0.88685 1.25522 0.94450 0.95636 1.00737 1.69433 1.36258 1.08041 1.37257 0.85930 0.78914 0.78237 0.81293 1.20630 1.19506 1.19761 1.19480 0.82133 0.86504 0.84668 1.90550 1.50441 1.22549 1.80153 1.22149 0.98818 0.99323 0.96910 0.86229 1.22625 1.03426 0.97315 0.92175 1.22340 0.91406 0.89783 0.98990 1.45850 1.30979 1.35552 1.16141 1.17890 0.89420 0.94223 0.89614 1.21718 0.95844 0.96931 1.02121 1.20975 0.97546 0.99391 0.91761 1.20855 0.95828 0.99043 0.93762 1.98352 1.54070 1.91449 1.61260 1.20752 0.94476 0.95328 0.99592 1.20699 1.01137 1.01334 0.94146 1.20603 0.84602 0.82505 0.80344 1.90707 1.48451 1.27184 1.67973 0.87789 0.81332 0.91346 0.88600 0.87356 0.89351 0.89999 0.81538 0.84544 0.84754 0.84762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -9.71 18.54 42.16 0.78 -8.93 16 2 C 0.20 4.09 14.65 -20.76 -0.30 3.79 16 3 C 0.17 3.55 4.99 -6.83 -0.03 3.52 16 4 N -0.42 -9.96 2.53 -117.94 -0.30 -10.26 16 5 C -0.31 -8.04 8.94 -14.93 -0.13 -8.17 16 6 H 0.10 2.53 7.72 -52.49 -0.41 2.13 16 7 C 0.04 1.01 5.28 -17.47 -0.09 0.92 16 8 N -0.87 -21.61 10.75 55.50 0.60 -21.01 16 9 Si 0.93 19.71 29.55 -169.99 -5.02 14.69 16 10 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 11 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 12 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 13 C 0.49 10.80 6.69 -10.99 -0.07 10.72 16 14 O -0.56 -13.86 15.41 5.55 0.09 -13.78 16 15 C -0.15 -2.45 2.38 -91.78 -0.22 -2.66 16 16 H 0.12 1.83 6.57 -51.93 -0.34 1.49 16 17 C -0.12 -1.47 6.59 -25.10 -0.17 -1.64 16 18 C 0.10 0.96 6.52 -3.13 -0.02 0.94 16 19 N -0.56 -7.65 3.14 -112.26 -0.35 -8.01 16 20 C 0.18 2.41 6.59 -83.68 -0.55 1.86 16 21 C -0.15 -2.04 9.28 -39.40 -0.37 -2.40 16 22 C -0.08 -0.93 9.82 -39.57 -0.39 -1.32 16 23 C -0.07 -0.75 6.32 -39.47 -0.25 -1.00 16 24 Cl -0.08 -0.81 28.95 -51.86 -1.50 -2.31 16 25 C -0.08 -0.81 9.82 -39.58 -0.39 -1.20 16 26 C -0.15 -1.57 9.42 -39.40 -0.37 -1.94 16 27 C 0.53 9.05 7.02 -10.86 -0.08 8.98 16 28 O -0.47 -9.36 12.75 5.55 0.07 -9.29 16 29 H 0.10 2.02 4.91 -51.93 -0.26 1.76 16 30 H 0.17 3.81 5.17 -51.93 -0.27 3.54 16 31 H 0.28 6.49 8.31 -40.82 -0.34 6.15 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.11 1.57 6.88 -51.93 -0.36 1.21 16 34 H 0.09 0.69 7.21 -51.93 -0.37 0.31 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.17 2.67 5.26 -52.49 -0.28 2.39 16 37 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.13 1.03 6.74 -52.49 -0.35 0.68 16 LS Contribution 348.44 15.07 5.25 5.25 Total: -1.00 -30.12 348.44 -7.28 -37.41 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -3.46 Total: 5.85 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: -3.43 Total: 10.38 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 0.73 Total: -48.20 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: 0.16 Total: -23.07 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.12 -7.28 -37.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126540039.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.028 kcal (2) G-P(sol) polarization free energy of solvation -30.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds