Wall clock time and date at job start Wed Apr 1 2020 04:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46980 * 196.10397 * 3 2 1 5 5 C 1.37094 * 119.99787 * 97.94482 * 4 3 2 6 6 H 1.07998 * 119.99937 * 220.49629 * 5 4 3 7 7 C 1.38951 * 120.00262 * 40.49163 * 5 4 3 8 8 N 1.31410 * 120.00180 * 3.11840 * 7 5 4 9 9 Si 1.86809 * 119.99941 * 183.11337 * 7 5 4 10 10 H 1.48495 * 109.46901 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.47121 * 300.00598 * 9 7 5 12 12 H 1.48498 * 109.46523 * 60.00404 * 9 7 5 13 13 C 1.34774 * 119.99918 * 277.94015 * 4 3 2 14 14 O 1.21293 * 119.99953 * 177.48877 * 13 4 3 15 15 C 1.50699 * 120.00031 * 357.48693 * 13 4 3 16 16 H 1.08994 * 110.43393 * 42.31588 * 15 13 4 17 17 C 1.54633 * 110.48663 * 164.99651 * 15 13 4 18 18 C 1.54471 * 101.76448 * 143.47689 * 17 15 13 19 19 N 1.46764 * 105.47639 * 334.58593 * 18 17 15 20 20 C 1.39975 * 124.35446 * 196.99677 * 19 18 17 21 21 C 1.38858 * 120.05995 * 186.17275 * 20 19 18 22 22 C 1.38108 * 119.94202 * 179.76566 * 21 20 19 23 23 C 1.38387 * 120.05547 * 0.50936 * 22 21 20 24 24 Cl 1.73605 * 119.94213 * 179.76581 * 23 22 21 25 25 C 1.38386 * 120.11740 * 359.74121 * 23 22 21 26 26 C 1.38102 * 120.05202 * 0.02562 * 25 23 22 27 27 C 1.34424 * 111.29974 * 17.01481 * 19 18 17 28 28 O 1.21290 * 124.94098 * 179.55816 * 27 19 18 29 29 H 1.09002 * 109.47234 * 76.10162 * 3 2 1 30 30 H 1.09002 * 109.47062 * 316.10731 * 3 2 1 31 31 H 0.96998 * 120.00374 * 179.97438 * 8 7 5 32 32 H 1.08997 * 110.96748 * 261.60103 * 17 15 13 33 33 H 1.09005 * 110.96308 * 25.36040 * 17 15 13 34 34 H 1.09001 * 110.25080 * 215.58959 * 18 17 15 35 35 H 1.08996 * 110.32288 * 93.62308 * 18 17 15 36 36 H 1.07999 * 120.02856 * 0.02562 * 21 20 19 37 37 H 1.08000 * 119.97210 * 180.27206 * 22 21 20 38 38 H 1.07991 * 119.96993 * 180.02562 * 25 23 22 39 39 H 1.08002 * 120.02594 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.3279 0.3831 5 6 3.4788 1.5702 1.6770 6 1 3.2211 2.5062 2.1501 7 6 4.1985 0.6116 2.3796 8 7 4.5650 -0.5015 1.7850 9 14 4.6453 0.9052 4.1696 10 1 5.4082 -0.2591 4.6867 11 1 5.4783 2.1298 4.2774 12 1 3.4047 1.0785 4.9672 13 6 3.1679 2.3106 -0.5364 14 8 3.5283 3.4217 -0.2096 15 6 2.8008 2.0290 -1.9706 16 1 1.9030 1.4130 -2.0196 17 6 2.5965 3.3509 -2.7465 18 6 3.1706 2.9929 -4.1352 19 7 4.1360 1.9141 -3.8936 20 6 5.1254 1.5214 -4.8025 21 6 5.9098 0.4066 -4.5380 22 6 6.8821 0.0184 -5.4388 23 6 7.0820 0.7456 -6.5991 24 17 8.3091 0.2586 -7.7264 25 6 6.3051 1.8601 -6.8626 26 6 5.3283 2.2496 -5.9674 27 6 3.9477 1.3514 -2.6874 28 8 4.6018 0.4335 -2.2394 29 1 2.9715 -0.2460 -0.9976 30 1 2.9717 -0.7398 0.7125 31 1 5.0677 -1.1706 2.2754 32 1 1.5384 3.6034 -2.8150 33 1 3.1611 4.1631 -2.2886 34 1 3.6721 3.8573 -4.5704 35 1 2.3756 2.6466 -4.7956 36 1 5.7569 -0.1590 -3.6307 37 1 7.4895 -0.8512 -5.2357 38 1 6.4628 2.4256 -7.7690 39 1 4.7220 3.1193 -6.1737 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126540039.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:27 Heat of formation + Delta-G solvation = -13.023117 kcal Electronic energy + Delta-G solvation = -27808.913007 eV Core-core repulsion = 23742.711384 eV Total energy + Delta-G solvation = -4066.201624 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.51085 -40.59993 -39.49160 -38.06145 -37.66060 -37.24971 -36.42733 -34.22560 -33.58142 -32.11248 -30.12673 -29.35381 -29.08503 -26.69277 -24.47798 -24.29535 -22.80290 -21.53289 -20.43494 -19.80527 -18.81046 -18.76721 -17.85881 -17.70840 -17.50443 -17.02776 -16.38903 -16.08918 -15.75486 -15.45556 -15.32917 -15.02182 -14.88786 -14.82912 -14.55338 -14.48696 -14.18425 -13.95469 -13.83908 -13.64976 -13.21743 -13.10737 -12.96672 -12.93134 -12.65813 -12.63988 -12.57608 -12.30725 -12.11465 -12.07211 -11.82159 -11.02170 -10.94077 -10.80034 -10.62660 -10.08195 -9.69732 -8.92388 -8.34133 -6.22710 0.00556 0.28087 1.16178 1.22289 1.42494 1.44511 1.49953 1.56180 1.62142 1.73391 1.96019 2.28891 2.67105 2.87844 2.90922 3.10392 3.31307 3.44911 3.81078 3.82703 3.86361 3.92666 4.09722 4.20479 4.30393 4.40137 4.47937 4.54306 4.61572 4.92195 4.93793 5.01882 5.10472 5.13041 5.16345 5.26743 5.39992 5.46367 5.84219 5.94015 6.12297 6.35444 6.49659 6.85175 7.03918 7.23156 7.79911 8.66454 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013746 B = 0.003061 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.538473 B = 9146.623019 C =10038.783482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.216 3.784 3 C 0.184 3.816 4 N -0.439 5.439 5 C -0.344 4.344 6 H 0.075 0.925 7 C 0.008 3.992 8 N -0.886 5.886 9 Si 0.986 3.014 10 H -0.269 1.269 11 H -0.277 1.277 12 H -0.267 1.267 13 C 0.478 3.522 14 O -0.593 6.593 15 C -0.144 4.144 16 H 0.133 0.867 17 C -0.112 4.112 18 C 0.097 3.903 19 N -0.555 5.555 20 C 0.161 3.839 21 C -0.170 4.170 22 C -0.086 4.086 23 C -0.070 4.070 24 Cl -0.071 7.071 25 C -0.076 4.076 26 C -0.136 4.136 27 C 0.522 3.478 28 O -0.514 6.514 29 H 0.118 0.882 30 H 0.155 0.845 31 H 0.280 0.720 32 H 0.127 0.873 33 H 0.086 0.914 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.166 0.834 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.609 3.190 -19.553 19.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.101 4.101 3 C 0.057 3.943 4 N -0.157 5.157 5 C -0.471 4.471 6 H 0.093 0.907 7 C -0.195 4.195 8 N -0.524 5.524 9 Si 0.810 3.190 10 H -0.194 1.194 11 H -0.202 1.202 12 H -0.192 1.192 13 C 0.266 3.734 14 O -0.476 6.476 15 C -0.169 4.169 16 H 0.150 0.850 17 C -0.150 4.150 18 C -0.023 4.023 19 N -0.278 5.278 20 C 0.067 3.933 21 C -0.190 4.190 22 C -0.105 4.105 23 C -0.098 4.098 24 Cl -0.042 7.042 25 C -0.095 4.095 26 C -0.156 4.156 27 C 0.310 3.690 28 O -0.390 6.390 29 H 0.135 0.865 30 H 0.172 0.828 31 H 0.090 0.910 32 H 0.145 0.855 33 H 0.105 0.895 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.155 0.845 37 H 0.158 0.842 38 H 0.184 0.816 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.655 3.024 -19.158 19.406 hybrid contribution 0.878 -0.384 1.302 1.616 sum 1.532 2.640 -17.857 18.116 Atomic orbital electron populations 1.81023 1.13559 1.09465 1.11187 1.30697 0.96175 0.92010 0.91264 1.19666 0.78040 0.90613 1.05991 1.43299 1.55102 1.08813 1.08508 1.19480 1.34834 1.04387 0.88417 0.90695 1.26183 0.93982 0.95265 1.04027 1.69529 1.36146 1.08303 1.38385 0.85100 0.78677 0.78016 0.77236 1.19388 1.20222 1.19161 1.20325 0.80845 0.85553 0.86718 1.90509 1.51782 1.23877 1.81465 1.22125 0.99185 1.02179 0.93413 0.84983 1.22693 1.05332 0.94141 0.92810 1.22700 0.91852 0.89936 0.97810 1.45864 1.31376 1.35605 1.14991 1.18095 0.89715 0.94786 0.90712 1.21567 0.97538 0.98039 1.01864 1.21013 0.97379 0.99950 0.92147 1.21008 0.96081 0.99264 0.93414 1.98359 1.53725 1.91468 1.60680 1.21150 0.93361 0.94617 1.00360 1.21049 1.00843 1.01398 0.92313 1.20699 0.84412 0.82326 0.81547 1.90693 1.49879 1.29117 1.69279 0.86471 0.82848 0.90976 0.85519 0.89530 0.86205 0.86241 0.84480 0.84173 0.81643 0.81152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -19.32 18.54 20.01 0.37 -18.95 16 2 C 0.22 8.72 14.65 89.44 1.31 10.03 16 3 C 0.18 7.86 4.99 84.57 0.42 8.29 16 4 N -0.44 -21.42 2.53 -645.42 -1.63 -23.05 16 5 C -0.34 -18.44 8.94 84.04 0.75 -17.68 16 6 H 0.08 4.21 7.72 -2.91 -0.02 4.19 16 7 C 0.01 0.41 5.28 84.93 0.45 0.86 16 8 N -0.89 -45.03 10.75 21.66 0.23 -44.80 16 9 Si 0.99 41.10 29.55 68.60 2.03 43.13 16 10 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 11 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 13 C 0.48 21.85 6.69 87.66 0.59 22.43 16 14 O -0.59 -30.69 15.41 -3.07 -0.05 -30.74 16 15 C -0.14 -4.76 2.38 -11.55 -0.03 -4.79 16 16 H 0.13 3.94 6.57 -2.39 -0.02 3.92 16 17 C -0.11 -2.57 6.59 31.65 0.21 -2.36 16 18 C 0.10 1.55 6.52 86.83 0.57 2.12 16 19 N -0.56 -14.21 3.14 -627.67 -1.97 -16.18 16 20 C 0.16 3.96 6.59 38.14 0.25 4.22 16 21 C -0.17 -4.82 9.28 22.39 0.21 -4.61 16 22 C -0.09 -2.04 9.82 22.27 0.22 -1.82 16 23 C -0.07 -1.41 6.32 22.34 0.14 -1.27 16 24 Cl -0.07 -1.30 28.95 -2.72 -0.08 -1.38 16 25 C -0.08 -1.22 9.82 22.27 0.22 -1.00 16 26 C -0.14 -2.27 9.42 22.39 0.21 -2.06 16 27 C 0.52 17.92 7.02 87.90 0.62 18.53 16 28 O -0.51 -21.44 12.75 -3.06 -0.04 -21.48 16 29 H 0.12 4.71 4.91 -2.39 -0.01 4.69 16 30 H 0.16 7.19 5.17 -2.39 -0.01 7.18 16 31 H 0.28 13.37 8.31 -92.71 -0.77 12.60 16 32 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.09 2.42 6.88 -2.38 -0.02 2.40 16 34 H 0.12 1.23 7.21 -2.39 -0.02 1.21 16 35 H 0.12 1.12 8.14 -2.39 -0.02 1.11 16 36 H 0.14 4.75 5.26 -2.91 -0.02 4.74 16 37 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 38 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 39 H 0.17 1.58 6.74 -2.91 -0.02 1.56 16 Total: -1.00 -69.42 348.44 6.13 -63.29 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 1.13 Total: 19.28 kcal Atomic # 6 Polarization: 24.74 SS G_CDS: 6.13 Total: 30.88 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -3.00 Total: -102.97 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: -0.09 Total: -52.22 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.08 Total: -1.38 kcal Total: -69.42 6.13 -63.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126540039.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.266 kcal (2) G-P(sol) polarization free energy of solvation -69.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds