Wall clock time and date at job start Wed Apr 1 2020 04:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47103 * 215.04631 * 3 2 1 5 5 C 1.37095 * 120.00571 * 263.16357 * 4 3 2 6 6 H 1.07997 * 120.00122 * 188.89655 * 5 4 3 7 7 C 1.38947 * 119.99652 * 8.89445 * 5 4 3 8 8 N 1.31409 * 120.00280 * 13.96180 * 7 5 4 9 9 Si 1.86799 * 119.99838 * 193.96193 * 7 5 4 10 10 H 1.48505 * 109.47085 * 59.99827 * 9 7 5 11 11 H 1.48500 * 109.47449 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47397 * 300.00031 * 9 7 5 13 13 C 1.34783 * 119.99354 * 83.16333 * 4 3 2 14 14 O 1.21296 * 119.99693 * 184.14775 * 13 4 3 15 15 C 1.50699 * 119.99948 * 4.14245 * 13 4 3 16 16 H 1.08991 * 110.43934 * 335.29417 * 15 13 4 17 17 C 1.54633 * 110.48418 * 212.74943 * 15 13 4 18 18 C 1.54482 * 101.76500 * 216.52483 * 17 15 13 19 19 N 1.46755 * 105.47203 * 25.41998 * 18 17 15 20 20 C 1.39979 * 124.34749 * 162.98270 * 19 18 17 21 21 C 1.38864 * 120.05720 * 354.32260 * 20 19 18 22 22 C 1.38108 * 119.94112 * 180.25522 * 21 20 19 23 23 C 1.38390 * 120.05536 * 359.45144 * 22 21 20 24 24 Cl 1.73600 * 119.94210 * 180.27760 * 23 22 21 25 25 C 1.38385 * 120.11410 * 0.55309 * 23 22 21 26 26 C 1.38106 * 120.05801 * 359.72096 * 25 23 22 27 27 C 1.34415 * 111.30491 * 343.24779 * 19 18 17 28 28 O 1.21287 * 124.94600 * 180.12585 * 27 19 18 29 29 H 1.09005 * 109.47194 * 95.05241 * 3 2 1 30 30 H 1.08992 * 109.47670 * 335.04917 * 3 2 1 31 31 H 0.97009 * 120.00161 * 180.02562 * 8 7 5 32 32 H 1.09002 * 110.96477 * 98.40739 * 17 15 13 33 33 H 1.08999 * 111.00294 * 334.66476 * 17 15 13 34 34 H 1.09001 * 110.24726 * 266.41853 * 18 17 15 35 35 H 1.08997 * 110.24277 * 144.41832 * 18 17 15 36 36 H 1.07999 * 120.02549 * 359.97438 * 21 20 19 37 37 H 1.07992 * 119.97087 * 179.72872 * 22 21 20 38 38 H 1.08003 * 119.96657 * 179.74735 * 25 23 22 39 39 H 1.07995 * 120.02566 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.1317 0.7932 5 6 3.4571 2.2994 0.1723 6 1 3.9495 3.0796 0.7337 7 6 3.1897 2.4790 -1.1794 8 7 2.3604 1.6691 -1.7984 9 14 4.0090 3.8717 -2.1165 10 1 5.4837 3.7051 -2.0615 11 1 3.5610 3.8468 -3.5321 12 1 3.6344 5.1703 -1.5011 13 6 3.1895 1.0242 2.1334 14 8 3.5213 1.9837 2.7971 15 6 2.8818 -0.2881 2.8074 16 1 2.2111 -0.8852 2.1897 17 6 2.2614 -0.0473 4.2032 18 6 2.8745 -1.2034 5.0241 19 7 4.1293 -1.5443 4.3436 20 6 5.1632 -2.2908 4.9208 21 6 5.0915 -2.6609 6.2573 22 6 6.1154 -3.3929 6.8257 23 6 7.2069 -3.7672 6.0616 24 17 8.4889 -4.6935 6.7773 25 6 7.2808 -3.3995 4.7296 26 6 6.2622 -2.6627 4.1578 27 6 4.1606 -1.0428 3.0969 28 8 5.0792 -1.1780 2.3166 29 1 2.9713 0.0913 -1.0237 30 1 2.9718 -0.9308 0.4335 31 1 2.1740 1.7943 -2.7422 32 1 1.1750 -0.1283 4.1664 33 1 2.5650 0.9198 4.6041 34 1 2.2022 -2.0613 5.0279 35 1 3.0755 -0.8763 6.0443 36 1 4.2379 -2.3727 6.8528 37 1 6.0622 -3.6773 7.8662 38 1 8.1356 -3.6895 4.1365 39 1 6.3206 -2.3757 3.1183 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126540282.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:30 Heat of formation + Delta-G solvation = 10.273447 kcal Electronic energy + Delta-G solvation = -27603.824025 eV Core-core repulsion = 23538.632616 eV Total energy + Delta-G solvation = -4065.191409 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.34746 -39.30869 -38.29463 -36.76483 -36.43716 -35.89216 -34.56432 -33.03136 -31.86815 -31.28286 -29.09910 -28.19960 -27.48649 -25.01572 -23.48062 -23.31913 -21.70460 -20.43282 -18.96021 -18.06161 -17.80350 -17.42625 -16.89350 -16.29203 -16.16694 -15.49480 -15.18268 -14.65003 -14.50798 -14.21467 -14.00319 -13.80434 -13.71661 -13.55737 -13.27045 -13.16889 -12.85537 -12.78781 -12.23600 -12.05591 -11.95476 -11.82047 -11.73197 -11.69780 -11.37119 -11.26412 -11.07982 -10.98305 -10.60424 -10.50445 -10.31831 -10.09744 -9.63283 -9.36553 -9.26014 -8.85157 -8.20993 -8.01291 -6.53572 -4.09459 0.91102 1.10400 1.99648 2.43599 2.64313 3.04257 3.17632 3.20232 3.34340 3.52389 3.58995 3.81793 3.99730 4.31202 4.34124 4.53228 4.64574 4.70958 4.83998 4.88581 4.96115 5.01389 5.14271 5.19596 5.24656 5.33398 5.37779 5.58465 5.74374 5.81479 5.83905 5.97843 6.08460 6.10982 6.13850 6.27212 6.79412 6.80614 6.89239 7.37401 7.70895 7.99523 8.17413 8.53803 8.86108 9.06963 9.56034 10.44227 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.017286 B = 0.002716 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.445351 B =10307.998562 C =11029.068573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.242 3.758 3 C 0.195 3.805 4 N -0.427 5.427 5 C -0.297 4.297 6 H 0.112 0.888 7 C 0.027 3.973 8 N -0.886 5.886 9 Si 0.938 3.062 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.272 1.272 13 C 0.466 3.534 14 O -0.569 6.569 15 C -0.142 4.142 16 H 0.122 0.878 17 C -0.117 4.117 18 C 0.098 3.902 19 N -0.561 5.561 20 C 0.183 3.817 21 C -0.151 4.151 22 C -0.081 4.081 23 C -0.068 4.068 24 Cl -0.079 7.079 25 C -0.078 4.078 26 C -0.147 4.147 27 C 0.538 3.462 28 O -0.488 6.488 29 H 0.169 0.831 30 H 0.078 0.922 31 H 0.276 0.724 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.940 -12.156 13.325 18.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.155 5.155 2 C -0.076 4.076 3 C 0.068 3.932 4 N -0.144 5.144 5 C -0.424 4.424 6 H 0.130 0.870 7 C -0.174 4.174 8 N -0.527 5.527 9 Si 0.764 3.236 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.197 1.197 13 C 0.253 3.747 14 O -0.452 6.452 15 C -0.167 4.167 16 H 0.139 0.861 17 C -0.155 4.155 18 C -0.024 4.024 19 N -0.284 5.284 20 C 0.088 3.912 21 C -0.172 4.172 22 C -0.101 4.101 23 C -0.095 4.095 24 Cl -0.051 7.051 25 C -0.097 4.097 26 C -0.168 4.168 27 C 0.327 3.673 28 O -0.361 6.361 29 H 0.185 0.815 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.124 0.876 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.945 -11.789 13.033 18.011 hybrid contribution 0.646 0.473 -0.497 0.943 sum 4.592 -11.315 12.536 17.501 Atomic orbital electron populations 1.80939 1.13542 1.09959 1.11045 1.29670 0.95549 0.91362 0.90987 1.19556 0.80948 0.88877 1.03782 1.43562 1.54554 1.12690 1.03634 1.19860 1.35204 0.94863 0.92508 0.87015 1.25310 0.95823 0.99269 0.97013 1.69761 1.32309 1.38269 1.12377 0.85789 0.79565 0.80287 0.77955 1.19526 1.20748 1.19747 1.19046 0.85234 0.87982 0.82441 1.90552 1.52582 1.39078 1.63009 1.22104 0.96356 0.98566 0.99679 0.86074 1.22632 1.01222 0.99778 0.91876 1.22343 0.83732 0.98729 0.97641 1.45865 1.16958 1.50351 1.15211 1.17902 0.88278 0.92667 0.92315 1.20712 1.00704 1.02750 0.93079 1.20766 0.91963 0.97475 0.99859 1.20855 0.92231 1.02113 0.94307 1.98354 1.50407 1.72504 1.83802 1.20964 0.99006 0.96866 0.92865 1.21687 0.92602 0.99588 1.02880 1.20648 0.88357 0.77791 0.80549 1.90639 1.37683 1.57739 1.50035 0.81488 0.90394 0.91346 0.88502 0.87603 0.89865 0.89298 0.84697 0.84704 0.84567 0.81696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -10.65 18.54 42.15 0.78 -9.87 16 2 C 0.24 5.15 13.65 -20.76 -0.28 4.87 16 3 C 0.20 3.96 4.79 -6.83 -0.03 3.93 16 4 N -0.43 -9.91 2.61 -117.93 -0.31 -10.21 16 5 C -0.30 -7.55 9.50 -14.94 -0.14 -7.70 16 6 H 0.11 2.98 7.26 -52.49 -0.38 2.60 16 7 C 0.03 0.66 5.19 -17.47 -0.09 0.57 16 8 N -0.89 -21.28 9.00 55.50 0.50 -20.78 16 9 Si 0.94 19.43 29.57 -169.99 -5.03 14.41 16 10 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 11 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 12 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 13 C 0.47 10.28 6.52 -10.98 -0.07 10.21 16 14 O -0.57 -14.29 15.46 5.54 0.09 -14.21 16 15 C -0.14 -2.35 2.53 -91.78 -0.23 -2.58 16 16 H 0.12 1.83 5.80 -51.93 -0.30 1.53 16 17 C -0.12 -1.49 6.65 -25.10 -0.17 -1.66 16 18 C 0.10 0.96 6.51 -3.13 -0.02 0.94 16 19 N -0.56 -7.49 3.14 -112.26 -0.35 -7.84 16 20 C 0.18 2.33 6.60 -83.67 -0.55 1.78 16 21 C -0.15 -1.51 9.42 -39.40 -0.37 -1.88 16 22 C -0.08 -0.77 9.82 -39.57 -0.39 -1.16 16 23 C -0.07 -0.71 6.32 -39.47 -0.25 -0.96 16 24 Cl -0.08 -0.77 28.95 -51.86 -1.50 -2.27 16 25 C -0.08 -0.88 9.82 -39.58 -0.39 -1.27 16 26 C -0.15 -1.96 9.29 -39.40 -0.37 -2.33 16 27 C 0.54 8.97 7.33 -10.86 -0.08 8.89 16 28 O -0.49 -9.37 14.64 5.55 0.08 -9.28 16 29 H 0.17 3.60 5.40 -51.93 -0.28 3.32 16 30 H 0.08 1.33 6.65 -51.93 -0.35 0.98 16 31 H 0.28 6.38 8.31 -40.82 -0.34 6.04 16 32 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.11 1.55 7.03 -51.93 -0.36 1.18 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.69 7.24 -51.93 -0.38 0.31 16 36 H 0.14 1.00 6.75 -52.49 -0.35 0.65 16 37 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 39 H 0.17 2.51 5.26 -52.49 -0.28 2.23 16 LS Contribution 349.23 15.07 5.26 5.26 Total: -1.00 -30.48 349.23 -7.42 -37.90 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -3.50 Total: 5.25 kcal Atomic # 6 Polarization: 15.08 SS G_CDS: -3.43 Total: 11.64 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.62 Total: -48.70 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: 0.17 Total: -23.49 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.41 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.48 -7.42 -37.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126540282.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.172 kcal (2) G-P(sol) polarization free energy of solvation -30.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds