Wall clock time and date at job start Wed Apr 1 2020 04:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47103 * 215.04631 * 3 2 1 5 5 C 1.37095 * 120.00571 * 263.16357 * 4 3 2 6 6 H 1.07997 * 120.00122 * 188.89655 * 5 4 3 7 7 C 1.38947 * 119.99652 * 8.89445 * 5 4 3 8 8 N 1.31409 * 120.00280 * 13.96180 * 7 5 4 9 9 Si 1.86799 * 119.99838 * 193.96193 * 7 5 4 10 10 H 1.48505 * 109.47085 * 59.99827 * 9 7 5 11 11 H 1.48500 * 109.47449 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47397 * 300.00031 * 9 7 5 13 13 C 1.34783 * 119.99354 * 83.16333 * 4 3 2 14 14 O 1.21296 * 119.99693 * 184.14775 * 13 4 3 15 15 C 1.50699 * 119.99948 * 4.14245 * 13 4 3 16 16 H 1.08991 * 110.43934 * 335.29417 * 15 13 4 17 17 C 1.54633 * 110.48418 * 212.74943 * 15 13 4 18 18 C 1.54482 * 101.76500 * 216.52483 * 17 15 13 19 19 N 1.46755 * 105.47203 * 25.41998 * 18 17 15 20 20 C 1.39979 * 124.34749 * 162.98270 * 19 18 17 21 21 C 1.38864 * 120.05720 * 354.32260 * 20 19 18 22 22 C 1.38108 * 119.94112 * 180.25522 * 21 20 19 23 23 C 1.38390 * 120.05536 * 359.45144 * 22 21 20 24 24 Cl 1.73600 * 119.94210 * 180.27760 * 23 22 21 25 25 C 1.38385 * 120.11410 * 0.55309 * 23 22 21 26 26 C 1.38106 * 120.05801 * 359.72096 * 25 23 22 27 27 C 1.34415 * 111.30491 * 343.24779 * 19 18 17 28 28 O 1.21287 * 124.94600 * 180.12585 * 27 19 18 29 29 H 1.09005 * 109.47194 * 95.05241 * 3 2 1 30 30 H 1.08992 * 109.47670 * 335.04917 * 3 2 1 31 31 H 0.97009 * 120.00161 * 180.02562 * 8 7 5 32 32 H 1.09002 * 110.96477 * 98.40739 * 17 15 13 33 33 H 1.08999 * 111.00294 * 334.66476 * 17 15 13 34 34 H 1.09001 * 110.24726 * 266.41853 * 18 17 15 35 35 H 1.08997 * 110.24277 * 144.41832 * 18 17 15 36 36 H 1.07999 * 120.02549 * 359.97438 * 21 20 19 37 37 H 1.07992 * 119.97087 * 179.72872 * 22 21 20 38 38 H 1.08003 * 119.96657 * 179.74735 * 25 23 22 39 39 H 1.07995 * 120.02566 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.1317 0.7932 5 6 3.4571 2.2994 0.1723 6 1 3.9495 3.0796 0.7337 7 6 3.1897 2.4790 -1.1794 8 7 2.3604 1.6691 -1.7984 9 14 4.0090 3.8717 -2.1165 10 1 5.4837 3.7051 -2.0615 11 1 3.5610 3.8468 -3.5321 12 1 3.6344 5.1703 -1.5011 13 6 3.1895 1.0242 2.1334 14 8 3.5213 1.9837 2.7971 15 6 2.8818 -0.2881 2.8074 16 1 2.2111 -0.8852 2.1897 17 6 2.2614 -0.0473 4.2032 18 6 2.8745 -1.2034 5.0241 19 7 4.1293 -1.5443 4.3436 20 6 5.1632 -2.2908 4.9208 21 6 5.0915 -2.6609 6.2573 22 6 6.1154 -3.3929 6.8257 23 6 7.2069 -3.7672 6.0616 24 17 8.4889 -4.6935 6.7773 25 6 7.2808 -3.3995 4.7296 26 6 6.2622 -2.6627 4.1578 27 6 4.1606 -1.0428 3.0969 28 8 5.0792 -1.1780 2.3166 29 1 2.9713 0.0913 -1.0237 30 1 2.9718 -0.9308 0.4335 31 1 2.1740 1.7943 -2.7422 32 1 1.1750 -0.1283 4.1664 33 1 2.5650 0.9198 4.6041 34 1 2.2022 -2.0613 5.0279 35 1 3.0755 -0.8763 6.0443 36 1 4.2379 -2.3727 6.8528 37 1 6.0622 -3.6773 7.8662 38 1 8.1356 -3.6895 4.1365 39 1 6.3206 -2.3757 3.1183 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126540282.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:29 Heat of formation + Delta-G solvation = -6.714483 kcal Electronic energy + Delta-G solvation = -27604.560676 eV Core-core repulsion = 23538.632616 eV Total energy + Delta-G solvation = -4065.928061 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.49746 -40.63200 -39.54267 -37.95081 -37.66510 -37.23964 -36.33828 -34.24404 -33.58051 -32.12071 -30.16242 -29.45186 -29.01794 -26.69795 -24.49183 -24.30892 -22.80481 -21.56763 -20.39019 -19.84526 -18.90094 -18.78187 -17.92986 -17.83339 -17.42346 -16.89697 -16.31408 -16.11947 -15.70255 -15.44447 -15.33418 -14.95898 -14.89616 -14.82089 -14.55768 -14.49070 -14.14364 -13.96228 -13.73369 -13.47944 -13.31725 -13.12357 -13.01005 -12.87493 -12.67825 -12.58203 -12.38517 -12.23694 -12.12453 -11.99362 -11.82748 -11.20658 -10.97595 -10.83469 -10.62084 -10.08824 -10.04695 -8.93708 -8.38140 -6.01742 -0.00424 0.27403 1.15563 1.21873 1.36871 1.46331 1.54467 1.59524 1.72560 1.94665 2.11631 2.28541 2.66418 2.92476 2.95328 3.17435 3.33052 3.49001 3.79793 3.81869 3.85268 3.91895 4.07791 4.19876 4.29587 4.38830 4.48166 4.50327 4.60662 4.89813 4.92947 5.00702 5.09236 5.09305 5.11620 5.25875 5.38238 5.43130 5.82609 5.89440 5.92357 6.32725 6.81119 6.82507 7.01697 7.25260 7.77439 8.57087 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.017286 B = 0.002716 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.445351 B =10307.998562 C =11029.068573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.253 3.747 3 C 0.202 3.798 4 N -0.442 5.442 5 C -0.333 4.333 6 H 0.086 0.914 7 C 0.003 3.997 8 N -0.894 5.894 9 Si 0.992 3.008 10 H -0.268 1.268 11 H -0.271 1.271 12 H -0.278 1.278 13 C 0.460 3.540 14 O -0.609 6.609 15 C -0.140 4.140 16 H 0.136 0.864 17 C -0.113 4.113 18 C 0.099 3.901 19 N -0.555 5.555 20 C 0.160 3.840 21 C -0.136 4.136 22 C -0.076 4.076 23 C -0.070 4.070 24 Cl -0.071 7.071 25 C -0.085 4.085 26 C -0.169 4.169 27 C 0.530 3.470 28 O -0.528 6.528 29 H 0.158 0.842 30 H 0.111 0.889 31 H 0.279 0.721 32 H 0.123 0.877 33 H 0.083 0.917 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.170 0.830 37 H 0.165 0.835 38 H 0.143 0.857 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.310 -13.791 15.483 21.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.173 5.173 2 C -0.064 4.064 3 C 0.075 3.925 4 N -0.160 5.160 5 C -0.460 4.460 6 H 0.104 0.896 7 C -0.198 4.198 8 N -0.534 5.534 9 Si 0.816 3.184 10 H -0.193 1.193 11 H -0.196 1.196 12 H -0.204 1.204 13 C 0.249 3.751 14 O -0.495 6.495 15 C -0.165 4.165 16 H 0.153 0.847 17 C -0.151 4.151 18 C -0.021 4.021 19 N -0.277 5.277 20 C 0.066 3.934 21 C -0.156 4.156 22 C -0.095 4.095 23 C -0.098 4.098 24 Cl -0.042 7.042 25 C -0.104 4.104 26 C -0.190 4.190 27 C 0.318 3.682 28 O -0.404 6.404 29 H 0.175 0.825 30 H 0.129 0.871 31 H 0.089 0.911 32 H 0.141 0.859 33 H 0.101 0.899 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.187 0.813 37 H 0.183 0.817 38 H 0.160 0.840 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.294 -13.465 15.222 20.588 hybrid contribution 0.905 0.940 -1.080 1.694 sum 4.199 -12.525 14.142 19.352 Atomic orbital electron populations 1.80936 1.14014 1.10664 1.11716 1.29788 0.95587 0.90701 0.90363 1.19570 0.80339 0.89360 1.03199 1.43738 1.54940 1.12802 1.04505 1.19752 1.37083 0.95755 0.93378 0.89620 1.25907 0.95809 1.01098 0.96976 1.69842 1.32165 1.38845 1.12571 0.84990 0.78730 0.77559 0.77106 1.19344 1.19554 1.20381 1.19956 0.83474 0.89608 0.82066 1.90511 1.53911 1.41207 1.63883 1.22090 0.97237 0.95574 1.01597 0.84663 1.22693 1.02782 1.00089 0.89581 1.22680 0.82576 0.98881 0.97994 1.45864 1.18146 1.49564 1.14126 1.18115 0.88087 0.93674 0.93549 1.21048 1.01610 1.01232 0.91743 1.21151 0.90963 0.96309 1.01067 1.21016 0.92872 1.01838 0.94061 1.98360 1.50140 1.72219 1.83476 1.21020 0.98851 0.96834 0.93670 1.21560 0.94148 1.01122 1.02163 1.20672 0.87812 0.78097 0.81630 1.90627 1.38832 1.59380 1.51554 0.82536 0.87103 0.91055 0.85881 0.89850 0.86106 0.86224 0.81255 0.81708 0.83964 0.84374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -21.81 18.54 20.01 0.37 -21.44 16 2 C 0.25 10.70 13.65 89.44 1.22 11.92 16 3 C 0.20 8.25 4.79 84.57 0.40 8.66 16 4 N -0.44 -21.14 2.61 -645.40 -1.68 -22.83 16 5 C -0.33 -17.56 9.50 84.04 0.80 -16.77 16 6 H 0.09 4.87 7.26 -2.91 -0.02 4.84 16 7 C 0.00 0.13 5.19 84.93 0.44 0.57 16 8 N -0.89 -43.16 9.00 21.66 0.19 -42.96 16 9 Si 0.99 40.36 29.57 68.60 2.03 42.39 16 10 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 11 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 12 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 13 C 0.46 20.88 6.52 87.66 0.57 21.45 16 14 O -0.61 -31.95 15.46 -3.08 -0.05 -32.00 16 15 C -0.14 -4.58 2.53 -11.54 -0.03 -4.61 16 16 H 0.14 3.93 5.80 -2.39 -0.01 3.91 16 17 C -0.11 -2.67 6.65 31.65 0.21 -2.46 16 18 C 0.10 1.58 6.51 86.83 0.57 2.14 16 19 N -0.55 -13.83 3.14 -627.67 -1.97 -15.80 16 20 C 0.16 3.79 6.60 38.14 0.25 4.04 16 21 C -0.14 -2.18 9.42 22.39 0.21 -1.97 16 22 C -0.08 -1.16 9.82 22.27 0.22 -0.94 16 23 C -0.07 -1.34 6.32 22.34 0.14 -1.20 16 24 Cl -0.07 -1.22 28.95 -2.72 -0.08 -1.30 16 25 C -0.08 -1.88 9.82 22.27 0.22 -1.67 16 26 C -0.17 -4.55 9.29 22.39 0.21 -4.35 16 27 C 0.53 17.67 7.33 87.90 0.64 18.32 16 28 O -0.53 -21.12 14.64 -3.05 -0.04 -21.16 16 29 H 0.16 6.85 5.40 -2.38 -0.01 6.84 16 30 H 0.11 3.76 6.65 -2.39 -0.02 3.75 16 31 H 0.28 12.83 8.31 -92.70 -0.77 12.06 16 32 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.08 2.38 7.03 -2.39 -0.02 2.37 16 34 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.12 1.24 7.24 -2.39 -0.02 1.22 16 36 H 0.17 1.51 6.75 -2.91 -0.02 1.49 16 37 H 0.17 1.56 8.06 -2.91 -0.02 1.53 16 38 H 0.14 2.82 8.06 -2.91 -0.02 2.79 16 39 H 0.14 4.49 5.26 -2.91 -0.02 4.48 16 Total: -1.00 -70.00 349.23 5.98 -64.02 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 1.13 Total: 17.95 kcal Atomic # 6 Polarization: 27.06 SS G_CDS: 6.07 Total: 33.14 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -3.09 Total: -103.03 kcal Atomic # 8 Polarization: -53.07 SS G_CDS: -0.09 Total: -53.16 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.30 kcal Total: -70.00 5.98 -64.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126540282.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.308 kcal (2) G-P(sol) polarization free energy of solvation -69.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds