Wall clock time and date at job start Wed Apr 1 2020 04:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47360 * 256.93989 * 3 2 1 5 5 C 1.37103 * 119.99387 * 276.09186 * 4 3 2 6 6 H 1.07997 * 119.99628 * 141.44204 * 5 4 3 7 7 C 1.38949 * 120.00055 * 321.44135 * 5 4 3 8 8 N 1.31410 * 119.99826 * 155.95024 * 7 5 4 9 9 Si 1.86804 * 120.00095 * 335.94501 * 7 5 4 10 10 H 1.48500 * 109.46532 * 95.64764 * 9 7 5 11 11 H 1.48491 * 109.47089 * 215.64774 * 9 7 5 12 12 H 1.48501 * 109.46987 * 335.65320 * 9 7 5 13 13 C 1.34770 * 120.00173 * 96.08683 * 4 3 2 14 14 O 1.21292 * 119.99558 * 180.02562 * 13 4 3 15 15 C 1.50699 * 120.00345 * 0.02562 * 13 4 3 16 16 H 1.08995 * 110.85752 * 62.33097 * 15 13 4 17 17 C 1.54630 * 110.96819 * 298.54516 * 15 13 4 18 18 C 1.51279 * 104.19407 * 217.04651 * 17 15 13 19 19 O 1.21287 * 124.94026 * 196.22711 * 18 17 15 20 20 N 1.34416 * 110.11700 * 16.24957 * 18 17 15 21 21 C 1.39978 * 124.35084 * 180.40843 * 20 18 17 22 22 C 1.38845 * 120.07473 * 90.00033 * 21 20 18 23 23 C 1.38121 * 119.94252 * 180.02562 * 22 21 20 24 24 C 1.38296 * 120.09266 * 0.02562 * 23 22 21 25 25 C 1.38268 * 120.14684 * 359.74179 * 24 23 22 26 26 C 1.38229 * 120.05677 * 0.51203 * 25 24 23 27 27 Cl 1.73593 * 120.04389 * 179.76546 * 26 25 24 28 28 C 1.46760 * 111.30162 * 0.67399 * 20 18 17 29 29 H 1.08998 * 109.47157 * 136.93468 * 3 2 1 30 30 H 1.09002 * 109.47467 * 16.93859 * 3 2 1 31 31 H 0.96998 * 119.99911 * 179.97438 * 8 7 5 32 32 H 1.08999 * 110.48886 * 98.36542 * 17 15 13 33 33 H 1.09002 * 110.59795 * 335.77818 * 17 15 13 34 34 H 1.07994 * 120.02836 * 0.04640 * 22 21 20 35 35 H 1.08001 * 119.95644 * 179.97438 * 23 22 21 36 36 H 1.08001 * 119.92419 * 180.02562 * 24 23 22 37 37 H 1.07997 * 119.96518 * 180.27829 * 25 24 23 38 38 H 1.09003 * 110.24921 * 101.71752 * 28 20 18 39 39 H 1.08996 * 110.25001 * 223.71356 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0962 0.3130 1.3455 5 6 3.2053 1.6187 1.7491 6 1 2.9496 1.8941 2.7616 7 6 3.6448 2.5877 0.8554 8 7 3.3204 3.8476 1.0404 9 14 4.6971 2.0994 -0.6088 10 1 3.8315 1.9179 -1.8017 11 1 5.6948 3.1655 -0.8788 12 1 5.4012 0.8266 -0.3098 13 6 3.4380 -0.6831 2.1864 14 8 3.8418 -0.4244 3.3005 15 6 3.3185 -2.1183 1.7427 16 1 3.9733 -2.3181 0.8945 17 6 1.8518 -2.4728 1.4048 18 6 1.6930 -3.8967 1.8902 19 8 0.7914 -4.6428 1.5715 20 7 2.6962 -4.2147 2.7265 21 6 2.8450 -5.4625 3.3430 22 6 3.5746 -6.4649 2.7179 23 6 3.7193 -7.6953 3.3285 24 6 3.1381 -7.9303 4.5612 25 6 2.4149 -6.9333 5.1893 26 6 2.2617 -5.7013 4.5814 27 17 1.3485 -4.4517 5.3676 28 6 3.6119 -3.0834 2.9150 29 1 2.9709 0.7516 -0.7017 30 1 2.9718 -0.9823 -0.2994 31 1 3.6276 4.5241 0.4168 32 1 1.6833 -2.4152 0.3294 33 1 1.1658 -1.8108 1.9334 34 1 4.0287 -6.2825 1.7552 35 1 4.2863 -8.4753 2.8422 36 1 3.2533 -8.8933 5.0364 37 1 1.9661 -7.1185 6.1540 38 1 3.4150 -2.5936 3.8687 39 1 4.6463 -3.4242 2.8717 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126630349.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:22 Heat of formation + Delta-G solvation = 14.344243 kcal Electronic energy + Delta-G solvation = -27914.318006 eV Core-core repulsion = 23849.303120 eV Total energy + Delta-G solvation = -4065.014886 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.15752 -39.51042 -38.65090 -36.56921 -36.56260 -36.10700 -34.79586 -33.35913 -32.20949 -31.09784 -29.44038 -27.91330 -27.64982 -25.66331 -23.39915 -23.02552 -22.38490 -20.08091 -19.15625 -18.58109 -17.84946 -17.27902 -16.74659 -16.68930 -16.08846 -15.78670 -15.50137 -15.03906 -14.71036 -14.33749 -14.18245 -14.04799 -13.68040 -13.58162 -13.39108 -13.37138 -12.99620 -12.71290 -12.59813 -12.36850 -12.24528 -12.00390 -11.83317 -11.69370 -11.63662 -11.42263 -11.22476 -11.04871 -11.01458 -10.59213 -10.14513 -10.06874 -9.36589 -9.24940 -9.05341 -8.95604 -8.82971 -8.19217 -6.61514 -4.23498 0.76419 0.89323 1.95739 2.49336 2.73830 2.82512 2.94301 3.03396 3.06130 3.20021 3.23924 3.32606 3.92606 4.04625 4.29691 4.40101 4.46852 4.49685 4.61466 4.80709 4.87346 4.91666 4.93879 5.02048 5.05990 5.18511 5.39668 5.41958 5.50794 5.54074 5.62381 5.78929 5.81527 5.92428 6.02242 6.04814 6.24318 6.64954 6.89478 7.23082 7.91475 8.00795 8.09212 8.17426 8.66419 9.01508 9.36126 10.49572 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.018342 B = 0.003228 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.172152 B = 8672.622816 C = 8734.925682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C 0.203 3.797 3 C 0.177 3.823 4 N -0.455 5.455 5 C -0.329 4.329 6 H 0.111 0.889 7 C 0.067 3.933 8 N -0.846 5.846 9 Si 0.858 3.142 10 H -0.269 1.269 11 H -0.279 1.279 12 H -0.254 1.254 13 C 0.484 3.516 14 O -0.538 6.538 15 C -0.125 4.125 16 H 0.117 0.883 17 C -0.148 4.148 18 C 0.532 3.468 19 O -0.519 6.519 20 N -0.583 5.583 21 C 0.159 3.841 22 C -0.098 4.098 23 C -0.110 4.110 24 C -0.105 4.105 25 C -0.107 4.107 26 C -0.030 4.030 27 Cl -0.052 7.052 28 C 0.125 3.875 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.278 0.722 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.098 0.902 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.828 -20.717 1.149 21.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.108 5.108 2 C -0.117 4.117 3 C 0.050 3.950 4 N -0.177 5.177 5 C -0.456 4.456 6 H 0.128 0.872 7 C -0.141 4.141 8 N -0.480 5.480 9 Si 0.684 3.316 10 H -0.196 1.196 11 H -0.205 1.205 12 H -0.178 1.178 13 C 0.272 3.728 14 O -0.416 6.416 15 C -0.147 4.147 16 H 0.135 0.865 17 C -0.189 4.189 18 C 0.320 3.680 19 O -0.393 6.393 20 N -0.315 5.315 21 C 0.068 3.932 22 C -0.118 4.118 23 C -0.129 4.129 24 C -0.123 4.123 25 C -0.126 4.126 26 C -0.059 4.059 27 Cl -0.023 7.023 28 C 0.003 3.997 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.089 0.911 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.155 0.845 38 H 0.116 0.884 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.805 -20.645 1.609 20.897 hybrid contribution 0.909 0.260 -0.826 1.256 sum 3.714 -20.386 0.783 20.736 Atomic orbital electron populations 1.81106 1.13000 1.09075 1.07664 1.29784 0.95654 0.92780 0.93460 1.19581 0.81552 1.03670 0.90198 1.43540 1.56445 1.06900 1.10838 1.19018 1.46138 0.79268 1.01136 0.87186 1.25372 0.95829 0.94865 0.98079 1.69769 1.39540 1.01357 1.37333 0.87215 0.81903 0.80326 0.82157 1.19585 1.20451 1.17821 1.19734 0.81188 0.85045 0.86854 1.90619 1.47644 1.83497 1.19880 1.22387 0.97024 0.95409 0.99891 0.86532 1.22551 0.97530 0.94524 1.04245 1.20908 0.80347 0.89170 0.77530 1.90730 1.33510 1.56096 1.58968 1.45675 1.28436 1.10851 1.46492 1.17163 0.98836 0.86084 0.91104 1.21347 0.97886 0.92396 1.00142 1.21152 0.99650 0.96640 0.95429 1.21189 0.96858 0.98979 0.95283 1.21028 0.99785 0.91112 1.00686 1.21451 0.98442 0.91713 0.94257 1.98409 1.72319 1.52126 1.79418 1.22134 0.93393 0.84249 0.99878 0.87442 0.87087 0.91134 0.87338 0.86959 0.84676 0.84851 0.84770 0.84487 0.88380 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -8.58 18.54 42.15 0.78 -7.79 16 2 C 0.20 3.68 13.00 -20.76 -0.27 3.41 16 3 C 0.18 2.94 4.43 -6.83 -0.03 2.91 16 4 N -0.45 -9.31 2.12 -117.94 -0.25 -9.56 16 5 C -0.33 -8.26 9.26 -14.93 -0.14 -8.40 16 6 H 0.11 3.19 7.93 -52.49 -0.42 2.77 16 7 C 0.07 1.66 5.30 -17.47 -0.09 1.56 16 8 N -0.85 -22.53 13.96 55.50 0.77 -21.76 16 9 Si 0.86 17.24 25.21 -169.99 -4.28 12.96 16 10 H -0.27 -4.93 6.67 56.52 0.38 -4.56 16 11 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 12 H -0.25 -4.76 7.11 56.52 0.40 -4.36 16 13 C 0.48 9.26 6.95 -10.99 -0.08 9.18 16 14 O -0.54 -12.25 15.45 5.55 0.09 -12.16 16 15 C -0.12 -1.72 2.57 -90.04 -0.23 -1.96 16 16 H 0.12 1.20 7.58 -51.93 -0.39 0.81 16 17 C -0.15 -2.14 4.34 -26.74 -0.12 -2.25 16 18 C 0.53 8.31 7.98 -10.86 -0.09 8.22 16 19 O -0.52 -9.76 17.71 5.55 0.10 -9.66 16 20 N -0.58 -7.97 2.34 -112.13 -0.26 -8.23 16 21 C 0.16 2.01 5.38 -83.65 -0.45 1.56 16 22 C -0.10 -0.99 9.97 -39.40 -0.39 -1.38 16 23 C -0.11 -0.86 10.04 -39.60 -0.40 -1.26 16 24 C -0.10 -0.80 10.04 -39.55 -0.40 -1.20 16 25 C -0.11 -1.02 9.82 -39.57 -0.39 -1.41 16 26 C -0.03 -0.38 6.34 -39.32 -0.25 -0.63 16 27 Cl -0.05 -0.72 28.44 -51.86 -1.47 -2.19 16 28 C 0.12 1.65 6.59 -3.03 -0.02 1.63 16 29 H 0.11 1.85 3.30 -51.93 -0.17 1.67 16 30 H 0.11 1.29 5.46 -51.93 -0.28 1.01 16 31 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 32 H 0.11 1.37 6.28 -51.93 -0.33 1.05 16 33 H 0.11 1.86 7.38 -51.93 -0.38 1.48 16 34 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 36 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 37 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.10 1.52 7.07 -51.93 -0.37 1.15 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 350.34 15.07 5.28 5.28 Total: -1.00 -32.41 350.34 -6.20 -38.62 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -3.62 Total: 4.50 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: -3.34 Total: 10.00 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: 1.04 Total: -47.34 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: 0.18 Total: -21.82 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -4.28 Total: 12.96 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.47 Total: -2.19 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.41 -6.20 -38.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126630349.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.963 kcal (2) G-P(sol) polarization free energy of solvation -32.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds