Wall clock time and date at job start Wed Apr 1 2020 04:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47360 * 256.93989 * 3 2 1 5 5 C 1.37103 * 119.99387 * 276.09186 * 4 3 2 6 6 H 1.07997 * 119.99628 * 141.44204 * 5 4 3 7 7 C 1.38949 * 120.00055 * 321.44135 * 5 4 3 8 8 N 1.31410 * 119.99826 * 155.95024 * 7 5 4 9 9 Si 1.86804 * 120.00095 * 335.94501 * 7 5 4 10 10 H 1.48500 * 109.46532 * 95.64764 * 9 7 5 11 11 H 1.48491 * 109.47089 * 215.64774 * 9 7 5 12 12 H 1.48501 * 109.46987 * 335.65320 * 9 7 5 13 13 C 1.34770 * 120.00173 * 96.08683 * 4 3 2 14 14 O 1.21292 * 119.99558 * 180.02562 * 13 4 3 15 15 C 1.50699 * 120.00345 * 0.02562 * 13 4 3 16 16 H 1.08995 * 110.85752 * 62.33097 * 15 13 4 17 17 C 1.54630 * 110.96819 * 298.54516 * 15 13 4 18 18 C 1.51279 * 104.19407 * 217.04651 * 17 15 13 19 19 O 1.21287 * 124.94026 * 196.22711 * 18 17 15 20 20 N 1.34416 * 110.11700 * 16.24957 * 18 17 15 21 21 C 1.39978 * 124.35084 * 180.40843 * 20 18 17 22 22 C 1.38845 * 120.07473 * 90.00033 * 21 20 18 23 23 C 1.38121 * 119.94252 * 180.02562 * 22 21 20 24 24 C 1.38296 * 120.09266 * 0.02562 * 23 22 21 25 25 C 1.38268 * 120.14684 * 359.74179 * 24 23 22 26 26 C 1.38229 * 120.05677 * 0.51203 * 25 24 23 27 27 Cl 1.73593 * 120.04389 * 179.76546 * 26 25 24 28 28 C 1.46760 * 111.30162 * 0.67399 * 20 18 17 29 29 H 1.08998 * 109.47157 * 136.93468 * 3 2 1 30 30 H 1.09002 * 109.47467 * 16.93859 * 3 2 1 31 31 H 0.96998 * 119.99911 * 179.97438 * 8 7 5 32 32 H 1.08999 * 110.48886 * 98.36542 * 17 15 13 33 33 H 1.09002 * 110.59795 * 335.77818 * 17 15 13 34 34 H 1.07994 * 120.02836 * 0.04640 * 22 21 20 35 35 H 1.08001 * 119.95644 * 179.97438 * 23 22 21 36 36 H 1.08001 * 119.92419 * 180.02562 * 24 23 22 37 37 H 1.07997 * 119.96518 * 180.27829 * 25 24 23 38 38 H 1.09003 * 110.24921 * 101.71752 * 28 20 18 39 39 H 1.08996 * 110.25001 * 223.71356 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0962 0.3130 1.3455 5 6 3.2053 1.6187 1.7491 6 1 2.9496 1.8941 2.7616 7 6 3.6448 2.5877 0.8554 8 7 3.3204 3.8476 1.0404 9 14 4.6971 2.0994 -0.6088 10 1 3.8315 1.9179 -1.8017 11 1 5.6948 3.1655 -0.8788 12 1 5.4012 0.8266 -0.3098 13 6 3.4380 -0.6831 2.1864 14 8 3.8418 -0.4244 3.3005 15 6 3.3185 -2.1183 1.7427 16 1 3.9733 -2.3181 0.8945 17 6 1.8518 -2.4728 1.4048 18 6 1.6930 -3.8967 1.8902 19 8 0.7914 -4.6428 1.5715 20 7 2.6962 -4.2147 2.7265 21 6 2.8450 -5.4625 3.3430 22 6 3.5746 -6.4649 2.7179 23 6 3.7193 -7.6953 3.3285 24 6 3.1381 -7.9303 4.5612 25 6 2.4149 -6.9333 5.1893 26 6 2.2617 -5.7013 4.5814 27 17 1.3485 -4.4517 5.3676 28 6 3.6119 -3.0834 2.9150 29 1 2.9709 0.7516 -0.7017 30 1 2.9718 -0.9823 -0.2994 31 1 3.6276 4.5241 0.4168 32 1 1.6833 -2.4152 0.3294 33 1 1.1658 -1.8108 1.9334 34 1 4.0287 -6.2825 1.7552 35 1 4.2863 -8.4753 2.8422 36 1 3.2533 -8.8933 5.0364 37 1 1.9661 -7.1185 6.1540 38 1 3.4150 -2.5936 3.8687 39 1 4.6463 -3.4242 2.8717 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126630349.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:21 Heat of formation + Delta-G solvation = -6.476359 kcal Electronic energy + Delta-G solvation = -27915.220855 eV Core-core repulsion = 23849.303120 eV Total energy + Delta-G solvation = -4065.917735 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.30525 -40.75787 -39.71390 -38.03631 -37.51387 -37.41799 -36.42573 -34.58177 -33.84797 -31.81042 -30.39639 -29.37555 -28.84598 -27.27097 -24.47634 -23.77573 -23.53065 -21.14421 -20.58339 -20.22829 -18.88783 -18.53831 -18.24087 -17.58574 -17.42237 -16.95082 -16.74093 -16.04796 -15.92290 -15.69710 -15.38827 -15.09311 -14.90666 -14.85382 -14.66722 -14.41886 -14.28955 -14.11614 -14.09587 -13.85730 -13.54715 -13.13725 -12.98601 -12.67104 -12.60986 -12.58167 -12.52525 -12.37373 -12.16120 -11.99664 -11.74685 -11.30687 -11.04689 -10.50396 -10.10671 -9.98218 -9.96799 -9.74035 -8.48610 -6.18020 0.00328 0.18726 1.05768 1.27894 1.29244 1.42289 1.44526 1.56355 1.71704 1.76758 1.85132 2.25127 2.49731 2.64740 2.84398 3.12687 3.13858 3.39672 3.68259 3.75473 3.80488 3.94885 4.05345 4.15635 4.22764 4.29254 4.30451 4.31766 4.45811 4.49667 4.69448 4.79498 4.89288 5.15550 5.24076 5.37452 5.45721 5.48031 5.74869 5.86794 6.06022 6.40386 6.52121 6.88462 6.94872 7.17498 7.68930 8.67833 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.018342 B = 0.003228 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.172152 B = 8672.622816 C = 8734.925682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.217 3.783 3 C 0.174 3.826 4 N -0.465 5.465 5 C -0.344 4.344 6 H 0.044 0.956 7 C 0.014 3.986 8 N -0.906 5.906 9 Si 0.927 3.073 10 H -0.231 1.231 11 H -0.290 1.290 12 H -0.220 1.220 13 C 0.487 3.513 14 O -0.583 6.583 15 C -0.109 4.109 16 H 0.175 0.825 17 C -0.145 4.145 18 C 0.531 3.469 19 O -0.556 6.556 20 N -0.570 5.570 21 C 0.123 3.877 22 C -0.101 4.101 23 C -0.101 4.101 24 C -0.094 4.094 25 C -0.113 4.113 26 C -0.057 4.057 27 Cl -0.083 7.083 28 C 0.126 3.874 29 H 0.112 0.888 30 H 0.176 0.824 31 H 0.281 0.719 32 H 0.134 0.866 33 H 0.084 0.916 34 H 0.152 0.848 35 H 0.170 0.830 36 H 0.171 0.829 37 H 0.150 0.850 38 H 0.067 0.933 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.419 -24.930 -1.690 26.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.102 4.102 3 C 0.049 3.951 4 N -0.188 5.188 5 C -0.471 4.471 6 H 0.062 0.938 7 C -0.189 4.189 8 N -0.541 5.541 9 Si 0.747 3.253 10 H -0.156 1.156 11 H -0.217 1.217 12 H -0.142 1.142 13 C 0.276 3.724 14 O -0.464 6.464 15 C -0.130 4.130 16 H 0.192 0.808 17 C -0.185 4.185 18 C 0.320 3.680 19 O -0.434 6.434 20 N -0.300 5.300 21 C 0.033 3.967 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.112 4.112 25 C -0.132 4.132 26 C -0.085 4.085 27 Cl -0.054 7.054 28 C 0.005 3.995 29 H 0.129 0.871 30 H 0.193 0.807 31 H 0.091 0.909 32 H 0.152 0.848 33 H 0.102 0.898 34 H 0.170 0.830 35 H 0.188 0.812 36 H 0.188 0.812 37 H 0.168 0.832 38 H 0.086 0.914 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.395 -24.892 -1.215 25.499 hybrid contribution 0.080 1.488 0.272 1.515 sum 5.475 -23.404 -0.943 24.054 Atomic orbital electron populations 1.81126 1.14303 1.10479 1.08659 1.30131 0.96008 0.91639 0.92409 1.20028 0.80204 1.07182 0.87726 1.43524 1.57163 1.05376 1.12695 1.18517 1.47523 0.82077 0.99014 0.93846 1.26290 0.96316 0.94194 1.02122 1.69913 1.41341 1.03165 1.39728 0.86143 0.79715 0.80948 0.78499 1.15561 1.21685 1.14240 1.20604 0.79156 0.86956 0.85688 1.90606 1.49129 1.84712 1.21930 1.22405 0.97742 0.91032 1.01835 0.80786 1.22517 0.97193 0.93367 1.05424 1.20997 0.80168 0.89108 0.77695 1.90705 1.34904 1.57090 1.60679 1.45596 1.27626 1.11392 1.45418 1.17535 1.01014 0.86368 0.91775 1.21610 0.97274 0.92423 1.00743 1.21623 0.98656 0.96467 0.95140 1.21659 0.94871 0.99630 0.95050 1.21321 1.00052 0.90504 1.01365 1.21725 0.99591 0.92192 0.94957 1.98393 1.73302 1.53703 1.80018 1.22115 0.94981 0.84128 0.98272 0.87054 0.80715 0.90905 0.84817 0.89812 0.83022 0.81209 0.81169 0.83250 0.91425 0.86210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -18.49 18.54 20.00 0.37 -18.12 16 2 C 0.22 7.58 13.00 89.44 1.16 8.74 16 3 C 0.17 5.20 4.43 84.57 0.37 5.57 16 4 N -0.47 -18.70 2.12 -645.42 -1.37 -20.07 16 5 C -0.34 -18.03 9.26 84.04 0.78 -17.25 16 6 H 0.04 2.78 7.93 -2.91 -0.02 2.75 16 7 C 0.01 0.72 5.30 84.93 0.45 1.17 16 8 N -0.91 -50.50 13.96 21.66 0.30 -50.20 16 9 Si 0.93 33.67 25.21 68.60 1.73 35.39 16 10 H -0.23 -7.02 6.67 99.48 0.66 -6.36 16 11 H -0.29 -11.10 7.11 99.48 0.71 -10.39 16 12 H -0.22 -6.80 7.11 99.48 0.71 -6.10 16 13 C 0.49 18.27 6.95 87.66 0.61 18.87 16 14 O -0.58 -27.46 15.45 -3.07 -0.05 -27.51 16 15 C -0.11 -2.67 2.57 -10.42 -0.03 -2.69 16 16 H 0.17 2.38 7.58 -2.39 -0.02 2.36 16 17 C -0.14 -3.90 4.34 30.59 0.13 -3.77 16 18 C 0.53 15.97 7.98 87.90 0.70 16.67 16 19 O -0.56 -20.64 17.71 -3.05 -0.05 -20.70 16 20 N -0.57 -14.76 2.34 -627.27 -1.47 -16.22 16 21 C 0.12 2.92 5.38 38.16 0.21 3.13 16 22 C -0.10 -1.68 9.97 22.39 0.22 -1.46 16 23 C -0.10 -1.12 10.04 22.26 0.22 -0.89 16 24 C -0.09 -1.06 10.04 22.29 0.22 -0.84 16 25 C -0.11 -1.95 9.82 22.27 0.22 -1.73 16 26 C -0.06 -1.38 6.34 22.44 0.14 -1.24 16 27 Cl -0.08 -2.40 28.44 -2.72 -0.08 -2.48 16 28 C 0.13 3.13 6.59 86.89 0.57 3.70 16 29 H 0.11 3.33 3.30 -2.39 -0.01 3.32 16 30 H 0.18 2.92 5.46 -2.39 -0.01 2.91 16 31 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 32 H 0.13 2.89 6.28 -2.39 -0.02 2.87 16 33 H 0.08 2.81 7.38 -2.39 -0.02 2.79 16 34 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 35 H 0.17 0.68 8.06 -2.91 -0.02 0.65 16 36 H 0.17 0.70 8.06 -2.91 -0.02 0.67 16 37 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 38 H 0.07 2.14 7.07 -2.39 -0.02 2.12 16 39 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -81.02 350.34 6.46 -74.56 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 1.08 Total: 17.36 kcal Atomic # 6 Polarization: 21.99 SS G_CDS: 5.99 Total: 27.98 kcal Atomic # 7 Polarization: -102.45 SS G_CDS: -2.16 Total: -104.61 kcal Atomic # 8 Polarization: -48.11 SS G_CDS: -0.10 Total: -48.21 kcal Atomic # 14 Polarization: 33.67 SS G_CDS: 1.73 Total: 35.39 kcal Atomic # 17 Polarization: -2.40 SS G_CDS: -0.08 Total: -2.48 kcal Total: -81.02 6.46 -74.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126630349.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.085 kcal (2) G-P(sol) polarization free energy of solvation -81.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds