Wall clock time and date at job start Wed Apr 1 2020 04:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47105 * 155.09412 * 3 2 1 5 5 C 1.37093 * 119.99770 * 263.09031 * 4 3 2 6 6 H 1.08007 * 119.99732 * 142.21750 * 5 4 3 7 7 C 1.38949 * 120.00301 * 322.21393 * 5 4 3 8 8 N 1.31410 * 119.99915 * 158.51798 * 7 5 4 9 9 Si 1.86794 * 119.99924 * 338.52083 * 7 5 4 10 10 H 1.48500 * 109.47079 * 95.96012 * 9 7 5 11 11 H 1.48503 * 109.46939 * 215.95618 * 9 7 5 12 12 H 1.48499 * 109.47135 * 335.95564 * 9 7 5 13 13 C 1.34775 * 119.99685 * 83.08923 * 4 3 2 14 14 O 1.21294 * 119.99452 * 180.02562 * 13 4 3 15 15 C 1.50699 * 120.00268 * 0.02562 * 13 4 3 16 16 H 1.08996 * 110.88302 * 303.80997 * 15 13 4 17 17 C 1.54855 * 110.99438 * 67.73313 * 15 13 4 18 18 C 1.51287 * 104.21083 * 93.26719 * 17 15 13 19 19 O 1.21282 * 124.94333 * 196.28321 * 18 17 15 20 20 N 1.34415 * 110.11433 * 16.26260 * 18 17 15 21 21 C 1.39980 * 124.34889 * 180.43067 * 20 18 17 22 22 C 1.38846 * 120.07385 * 269.70265 * 21 20 18 23 23 C 1.38119 * 119.94052 * 179.67856 * 22 21 20 24 24 C 1.38292 * 120.09157 * 0.61758 * 23 22 21 25 25 C 1.38259 * 120.15176 * 359.67639 * 24 23 22 26 26 C 1.38227 * 120.05540 * 0.02562 * 25 24 23 27 27 Cl 1.73604 * 120.04932 * 179.97438 * 26 25 24 28 28 C 1.46763 * 111.30219 * 0.40991 * 20 18 17 29 29 H 1.09001 * 109.47739 * 35.09550 * 3 2 1 30 30 H 1.09001 * 109.47227 * 275.09204 * 3 2 1 31 31 H 0.97000 * 120.00017 * 180.02562 * 8 7 5 32 32 H 1.08997 * 110.47299 * 334.58587 * 17 15 13 33 33 H 1.09004 * 110.60049 * 212.00860 * 17 15 13 34 34 H 1.08000 * 120.03346 * 359.97183 * 22 21 20 35 35 H 1.08002 * 119.95445 * 180.29412 * 23 22 21 36 36 H 1.07999 * 119.92540 * 179.69868 * 24 23 22 37 37 H 1.07994 * 119.97721 * 180.02562 * 25 24 23 38 38 H 1.08993 * 110.24796 * 101.98309 * 28 20 18 39 39 H 1.09003 * 110.24640 * 223.89524 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0957 1.2537 -0.5817 5 6 3.4588 1.3004 -1.9028 6 1 3.2366 2.1771 -2.4933 7 6 4.1128 0.2200 -2.4823 8 7 4.0907 0.0612 -3.7866 9 14 5.0234 -1.0065 -1.4073 10 1 4.1429 -2.1694 -1.1283 11 1 6.2463 -1.4693 -2.1111 12 1 5.4047 -0.3560 -0.1280 13 6 3.1874 2.3604 0.1820 14 8 3.5908 3.3979 -0.2997 15 6 2.7888 2.3088 1.6344 16 1 1.7627 1.9575 1.7435 17 6 3.7679 1.4266 2.4475 18 6 4.7916 2.4038 2.9822 19 8 5.8760 2.0977 3.4310 20 7 4.3247 3.6607 2.8872 21 6 5.0336 4.7990 3.2884 22 6 4.9076 5.2757 4.5864 23 6 5.6135 6.3953 4.9812 24 6 6.4356 7.0494 4.0819 25 6 6.5592 6.5817 2.7868 26 6 5.8604 5.4582 2.3868 27 17 6.0152 4.8714 0.7603 28 6 2.9762 3.6861 2.3084 29 1 2.9718 -0.8400 -0.5908 30 1 2.9713 -0.0904 1.0236 31 1 4.5470 -0.6932 -4.1911 32 1 4.2448 0.6904 1.8005 33 1 3.2477 0.9321 3.2679 34 1 4.2618 4.7687 5.2881 35 1 5.5193 6.7634 5.9922 36 1 6.9825 7.9275 4.3922 37 1 7.2023 7.0945 2.0869 38 1 2.2319 3.8269 3.0921 39 1 2.8986 4.4822 1.5679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126630578.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:24 Heat of formation + Delta-G solvation = 17.985388 kcal Electronic energy + Delta-G solvation = -28487.695505 eV Core-core repulsion = 24422.838511 eV Total energy + Delta-G solvation = -4064.856994 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.09232 -39.36124 -38.48068 -36.53761 -36.13701 -35.98456 -34.78135 -33.28299 -32.14346 -30.89396 -29.28267 -27.89542 -27.62893 -25.64008 -23.29829 -22.80345 -22.33266 -19.97439 -19.15598 -18.68180 -17.72243 -17.16165 -16.66515 -16.54932 -16.01746 -15.68243 -15.10648 -14.93047 -14.84154 -14.09208 -14.03486 -13.90691 -13.63476 -13.61859 -13.30828 -13.17099 -12.99636 -12.64674 -12.61745 -12.16414 -12.13164 -11.95561 -11.81785 -11.63407 -11.36905 -11.33261 -11.30813 -10.92166 -10.57125 -10.53690 -10.08534 -9.89137 -9.32205 -9.07155 -8.92510 -8.79478 -8.68109 -8.13146 -6.56033 -4.18703 0.94976 1.06768 2.35884 2.58903 2.83909 2.89625 2.96325 3.03023 3.11278 3.16256 3.35938 3.41891 3.96165 4.08526 4.33788 4.34954 4.51271 4.65544 4.74825 4.80455 4.85826 5.02209 5.08862 5.17772 5.21075 5.33419 5.40993 5.42892 5.57721 5.59815 5.67462 5.83435 5.86455 5.96698 6.14409 6.18503 6.39666 6.79505 7.04579 7.28501 7.85272 8.03051 8.21396 8.23822 8.72092 9.06469 9.43114 10.55254 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.015115 B = 0.004206 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.046734 B = 6655.422871 C = 7286.046520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.205 3.795 3 C 0.170 3.830 4 N -0.459 5.459 5 C -0.322 4.322 6 H 0.111 0.889 7 C 0.065 3.935 8 N -0.852 5.852 9 Si 0.854 3.146 10 H -0.269 1.269 11 H -0.278 1.278 12 H -0.254 1.254 13 C 0.479 3.521 14 O -0.522 6.522 15 C -0.127 4.127 16 H 0.114 0.886 17 C -0.153 4.153 18 C 0.532 3.468 19 O -0.521 6.521 20 N -0.573 5.573 21 C 0.156 3.844 22 C -0.100 4.100 23 C -0.116 4.116 24 C -0.105 4.105 25 C -0.111 4.111 26 C -0.034 4.034 27 Cl -0.020 7.020 28 C 0.124 3.876 29 H 0.116 0.884 30 H 0.110 0.890 31 H 0.277 0.723 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.078 0.922 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.510 7.686 17.193 18.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.114 4.114 3 C 0.043 3.957 4 N -0.182 5.182 5 C -0.449 4.449 6 H 0.128 0.872 7 C -0.143 4.143 8 N -0.487 5.487 9 Si 0.680 3.320 10 H -0.195 1.195 11 H -0.204 1.204 12 H -0.178 1.178 13 C 0.267 3.733 14 O -0.399 6.399 15 C -0.150 4.150 16 H 0.132 0.868 17 C -0.193 4.193 18 C 0.321 3.679 19 O -0.395 6.395 20 N -0.304 5.304 21 C 0.065 3.935 22 C -0.120 4.120 23 C -0.135 4.135 24 C -0.124 4.124 25 C -0.130 4.130 26 C -0.062 4.062 27 Cl 0.010 6.990 28 C 0.003 3.997 29 H 0.133 0.867 30 H 0.128 0.872 31 H 0.088 0.912 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.154 0.846 38 H 0.096 0.904 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.731 7.949 16.818 18.617 hybrid contribution 0.873 -0.946 0.085 1.290 sum 1.605 7.003 16.903 18.367 Atomic orbital electron populations 1.81081 1.13087 1.08212 1.09347 1.30004 0.95704 0.93160 0.92514 1.19792 0.81249 0.92923 1.01762 1.43539 1.57255 1.06621 1.10793 1.19025 1.37672 1.05885 0.82279 0.87156 1.25359 0.95925 0.97498 0.95487 1.69728 1.39218 1.29719 1.10031 0.87286 0.81089 0.81177 0.82431 1.19541 1.20422 1.17784 1.19816 0.82036 0.85353 0.86132 1.90633 1.46708 1.29255 1.73329 1.22422 1.01222 0.96153 0.95178 0.86840 1.22578 0.96926 0.98262 1.01522 1.20813 0.87057 0.83006 0.77044 1.90721 1.21866 1.80883 1.46063 1.45457 1.17571 1.04397 1.63017 1.17141 0.95293 0.88851 0.92180 1.21284 0.99752 0.96575 0.94374 1.21078 0.96950 0.95492 0.99980 1.21164 0.98513 0.99934 0.92756 1.21061 0.99644 0.95251 0.97061 1.21664 0.98895 0.96491 0.89190 1.98506 1.96525 1.87453 1.16531 1.22051 0.81610 0.98572 0.97498 0.86664 0.87242 0.91215 0.86780 0.86496 0.85062 0.85138 0.85019 0.84616 0.90404 0.88029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.15 18.54 42.15 0.78 -7.37 16 2 C 0.21 3.55 14.87 -20.76 -0.31 3.24 16 3 C 0.17 2.87 4.02 -6.83 -0.03 2.85 16 4 N -0.46 -9.59 2.15 -117.93 -0.25 -9.84 16 5 C -0.32 -8.19 9.36 -14.94 -0.14 -8.33 16 6 H 0.11 3.22 7.92 -52.48 -0.42 2.81 16 7 C 0.06 1.64 5.27 -17.47 -0.09 1.55 16 8 N -0.85 -23.07 13.96 55.50 0.77 -22.29 16 9 Si 0.85 18.04 24.98 -169.99 -4.25 13.80 16 10 H -0.27 -5.09 6.71 56.52 0.38 -4.71 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 H -0.25 -5.16 7.11 56.52 0.40 -4.76 16 13 C 0.48 9.39 6.88 -10.99 -0.08 9.32 16 14 O -0.52 -11.82 14.16 5.55 0.08 -11.74 16 15 C -0.13 -1.79 2.67 -90.02 -0.24 -2.03 16 16 H 0.11 1.32 7.33 -51.93 -0.38 0.94 16 17 C -0.15 -2.02 5.21 -26.62 -0.14 -2.16 16 18 C 0.53 8.69 7.99 -10.86 -0.09 8.61 16 19 O -0.52 -10.24 17.71 5.56 0.10 -10.15 16 20 N -0.57 -8.48 2.34 -112.23 -0.26 -8.75 16 21 C 0.16 2.23 5.38 -83.64 -0.45 1.78 16 22 C -0.10 -1.13 9.97 -39.40 -0.39 -1.52 16 23 C -0.12 -1.07 10.04 -39.61 -0.40 -1.47 16 24 C -0.11 -0.98 10.04 -39.55 -0.40 -1.38 16 25 C -0.11 -1.30 9.82 -39.58 -0.39 -1.69 16 26 C -0.03 -0.50 6.34 -39.32 -0.25 -0.75 16 27 Cl -0.02 -0.35 27.21 -51.86 -1.41 -1.76 16 28 C 0.12 1.63 6.60 -3.12 -0.02 1.61 16 29 H 0.12 2.06 3.63 -51.93 -0.19 1.87 16 30 H 0.11 1.42 4.57 -51.93 -0.24 1.18 16 31 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.11 1.63 6.15 -51.93 -0.32 1.31 16 33 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 37 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.10 1.52 7.02 -51.93 -0.36 1.16 16 LS Contribution 349.87 15.07 5.27 5.27 Total: -1.00 -32.82 349.87 -6.17 -38.99 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -3.60 Total: 4.22 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: -3.40 Total: 9.62 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 1.04 Total: -48.25 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: 0.18 Total: -21.89 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -4.25 Total: 13.80 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.41 Total: -1.76 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.82 -6.17 -38.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126630578.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.974 kcal (2) G-P(sol) polarization free energy of solvation -32.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds