Wall clock time and date at job start Wed Apr 1 2020 04:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47105 * 155.09412 * 3 2 1 5 5 C 1.37093 * 119.99770 * 263.09031 * 4 3 2 6 6 H 1.08007 * 119.99732 * 142.21750 * 5 4 3 7 7 C 1.38949 * 120.00301 * 322.21393 * 5 4 3 8 8 N 1.31410 * 119.99915 * 158.51798 * 7 5 4 9 9 Si 1.86794 * 119.99924 * 338.52083 * 7 5 4 10 10 H 1.48500 * 109.47079 * 95.96012 * 9 7 5 11 11 H 1.48503 * 109.46939 * 215.95618 * 9 7 5 12 12 H 1.48499 * 109.47135 * 335.95564 * 9 7 5 13 13 C 1.34775 * 119.99685 * 83.08923 * 4 3 2 14 14 O 1.21294 * 119.99452 * 180.02562 * 13 4 3 15 15 C 1.50699 * 120.00268 * 0.02562 * 13 4 3 16 16 H 1.08996 * 110.88302 * 303.80997 * 15 13 4 17 17 C 1.54855 * 110.99438 * 67.73313 * 15 13 4 18 18 C 1.51287 * 104.21083 * 93.26719 * 17 15 13 19 19 O 1.21282 * 124.94333 * 196.28321 * 18 17 15 20 20 N 1.34415 * 110.11433 * 16.26260 * 18 17 15 21 21 C 1.39980 * 124.34889 * 180.43067 * 20 18 17 22 22 C 1.38846 * 120.07385 * 269.70265 * 21 20 18 23 23 C 1.38119 * 119.94052 * 179.67856 * 22 21 20 24 24 C 1.38292 * 120.09157 * 0.61758 * 23 22 21 25 25 C 1.38259 * 120.15176 * 359.67639 * 24 23 22 26 26 C 1.38227 * 120.05540 * 0.02562 * 25 24 23 27 27 Cl 1.73604 * 120.04932 * 179.97438 * 26 25 24 28 28 C 1.46763 * 111.30219 * 0.40991 * 20 18 17 29 29 H 1.09001 * 109.47739 * 35.09550 * 3 2 1 30 30 H 1.09001 * 109.47227 * 275.09204 * 3 2 1 31 31 H 0.97000 * 120.00017 * 180.02562 * 8 7 5 32 32 H 1.08997 * 110.47299 * 334.58587 * 17 15 13 33 33 H 1.09004 * 110.60049 * 212.00860 * 17 15 13 34 34 H 1.08000 * 120.03346 * 359.97183 * 22 21 20 35 35 H 1.08002 * 119.95445 * 180.29412 * 23 22 21 36 36 H 1.07999 * 119.92540 * 179.69868 * 24 23 22 37 37 H 1.07994 * 119.97721 * 180.02562 * 25 24 23 38 38 H 1.08993 * 110.24796 * 101.98309 * 28 20 18 39 39 H 1.09003 * 110.24640 * 223.89524 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0957 1.2537 -0.5817 5 6 3.4588 1.3004 -1.9028 6 1 3.2366 2.1771 -2.4933 7 6 4.1128 0.2200 -2.4823 8 7 4.0907 0.0612 -3.7866 9 14 5.0234 -1.0065 -1.4073 10 1 4.1429 -2.1694 -1.1283 11 1 6.2463 -1.4693 -2.1111 12 1 5.4047 -0.3560 -0.1280 13 6 3.1874 2.3604 0.1820 14 8 3.5908 3.3979 -0.2997 15 6 2.7888 2.3088 1.6344 16 1 1.7627 1.9575 1.7435 17 6 3.7679 1.4266 2.4475 18 6 4.7916 2.4038 2.9822 19 8 5.8760 2.0977 3.4310 20 7 4.3247 3.6607 2.8872 21 6 5.0336 4.7990 3.2884 22 6 4.9076 5.2757 4.5864 23 6 5.6135 6.3953 4.9812 24 6 6.4356 7.0494 4.0819 25 6 6.5592 6.5817 2.7868 26 6 5.8604 5.4582 2.3868 27 17 6.0152 4.8714 0.7603 28 6 2.9762 3.6861 2.3084 29 1 2.9718 -0.8400 -0.5908 30 1 2.9713 -0.0904 1.0236 31 1 4.5470 -0.6932 -4.1911 32 1 4.2448 0.6904 1.8005 33 1 3.2477 0.9321 3.2679 34 1 4.2618 4.7687 5.2881 35 1 5.5193 6.7634 5.9922 36 1 6.9825 7.9275 4.3922 37 1 7.2023 7.0945 2.0869 38 1 2.2319 3.8269 3.0921 39 1 2.8986 4.4822 1.5679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126630578.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:23 Heat of formation + Delta-G solvation = -3.197791 kcal Electronic energy + Delta-G solvation = -28488.614077 eV Core-core repulsion = 24422.838511 eV Total energy + Delta-G solvation = -4065.775566 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.25871 -40.63345 -39.62227 -37.97315 -37.31643 -37.28617 -36.38724 -34.54557 -33.80350 -31.75661 -30.31494 -29.36260 -28.76042 -27.28134 -24.42374 -23.68475 -23.52235 -21.06778 -20.58772 -20.28657 -18.78767 -18.66901 -18.02272 -17.55148 -17.32908 -17.02530 -16.34562 -16.14899 -15.86461 -15.53767 -15.43443 -15.08974 -14.84140 -14.72712 -14.65714 -14.47005 -14.23133 -14.12788 -13.88538 -13.59723 -13.33676 -13.31918 -12.89455 -12.80677 -12.55805 -12.49541 -12.44109 -12.38704 -12.15679 -11.83041 -11.75416 -11.10315 -11.07893 -10.40258 -9.99857 -9.94804 -9.92571 -9.66166 -8.49140 -6.16699 0.05856 0.21005 1.19774 1.25712 1.37387 1.40767 1.47536 1.48859 1.72983 1.85323 1.94579 2.19145 2.55975 2.67045 2.81212 3.14484 3.24059 3.41100 3.62188 3.80664 3.85726 4.05840 4.07746 4.22399 4.27199 4.32703 4.34448 4.37144 4.55894 4.64642 4.76621 4.80869 4.82245 5.18340 5.28098 5.38208 5.48031 5.52778 5.85382 5.97429 6.06211 6.42753 6.50932 6.90984 7.06683 7.19802 7.75396 8.67552 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.015115 B = 0.004206 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.046734 B = 6655.422871 C = 7286.046520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.222 3.778 3 C 0.172 3.828 4 N -0.474 5.474 5 C -0.330 4.330 6 H 0.049 0.951 7 C 0.016 3.984 8 N -0.908 5.908 9 Si 0.915 3.085 10 H -0.221 1.221 11 H -0.293 1.293 12 H -0.240 1.240 13 C 0.473 3.527 14 O -0.561 6.561 15 C -0.117 4.117 16 H 0.150 0.850 17 C -0.147 4.147 18 C 0.520 3.480 19 O -0.565 6.565 20 N -0.570 5.570 21 C 0.125 3.875 22 C -0.102 4.102 23 C -0.104 4.104 24 C -0.096 4.096 25 C -0.121 4.121 26 C -0.065 4.065 27 Cl -0.067 7.067 28 C 0.124 3.876 29 H 0.112 0.888 30 H 0.161 0.839 31 H 0.280 0.720 32 H 0.107 0.893 33 H 0.174 0.826 34 H 0.153 0.847 35 H 0.171 0.829 36 H 0.169 0.831 37 H 0.143 0.857 38 H 0.127 0.873 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.832 7.116 22.195 23.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.097 4.097 3 C 0.046 3.954 4 N -0.197 5.197 5 C -0.457 4.457 6 H 0.067 0.933 7 C -0.187 4.187 8 N -0.545 5.545 9 Si 0.736 3.264 10 H -0.145 1.145 11 H -0.220 1.220 12 H -0.163 1.163 13 C 0.262 3.738 14 O -0.440 6.440 15 C -0.138 4.138 16 H 0.168 0.832 17 C -0.187 4.187 18 C 0.310 3.690 19 O -0.443 6.443 20 N -0.300 5.300 21 C 0.035 3.965 22 C -0.121 4.121 23 C -0.122 4.122 24 C -0.114 4.114 25 C -0.140 4.140 26 C -0.093 4.093 27 Cl -0.038 7.038 28 C 0.003 3.997 29 H 0.130 0.870 30 H 0.178 0.822 31 H 0.090 0.910 32 H 0.125 0.875 33 H 0.191 0.809 34 H 0.170 0.830 35 H 0.189 0.811 36 H 0.187 0.813 37 H 0.161 0.839 38 H 0.145 0.855 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.002 7.399 21.841 23.060 hybrid contribution 1.078 -0.494 -1.439 1.864 sum 1.076 6.905 20.402 21.566 Atomic orbital electron populations 1.81112 1.13692 1.08736 1.10189 1.29925 0.95514 0.92511 0.91782 1.20002 0.80872 0.90522 1.04021 1.43562 1.58180 1.08606 1.09391 1.18539 1.38750 1.04173 0.84271 0.93349 1.26118 0.96111 0.99766 0.96665 1.69860 1.40921 1.31337 1.12389 0.86331 0.79471 0.80011 0.80558 1.14525 1.21982 1.16252 1.20897 0.80312 0.84127 0.88430 1.90630 1.47716 1.30820 1.74817 1.22419 1.03214 0.97607 0.90610 0.83210 1.22724 0.95975 0.97261 1.02721 1.21367 0.87008 0.83981 0.76606 1.90690 1.23666 1.81643 1.48343 1.45563 1.17945 1.04358 1.62149 1.17543 0.96188 0.89325 0.93493 1.21580 1.00168 0.97197 0.93156 1.21593 0.94990 0.94028 1.01574 1.21617 0.97931 1.00535 0.91300 1.21316 0.99461 0.94522 0.98662 1.21927 1.01445 0.98493 0.87424 1.98481 1.96905 1.88216 1.20187 1.22206 0.82173 0.97022 0.98275 0.87043 0.82248 0.91039 0.87475 0.80886 0.82973 0.81140 0.81335 0.83923 0.85523 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -16.01 18.54 20.00 0.37 -15.64 16 2 C 0.22 7.09 14.87 89.44 1.33 8.42 16 3 C 0.17 5.33 4.02 84.57 0.34 5.67 16 4 N -0.47 -19.75 2.15 -645.41 -1.39 -21.14 16 5 C -0.33 -17.66 9.36 84.04 0.79 -16.88 16 6 H 0.05 3.12 7.92 -2.91 -0.02 3.10 16 7 C 0.02 0.85 5.27 84.93 0.45 1.30 16 8 N -0.91 -51.76 13.96 21.66 0.30 -51.45 16 9 Si 0.91 36.68 24.98 68.60 1.71 38.40 16 10 H -0.22 -7.22 6.71 99.48 0.67 -6.56 16 11 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.24 -8.97 7.11 99.48 0.71 -8.26 16 13 C 0.47 18.53 6.88 87.66 0.60 19.13 16 14 O -0.56 -26.71 14.16 -3.07 -0.04 -26.75 16 15 C -0.12 -2.94 2.67 -10.40 -0.03 -2.97 16 16 H 0.15 2.76 7.33 -2.39 -0.02 2.74 16 17 C -0.15 -3.30 5.21 30.67 0.16 -3.14 16 18 C 0.52 15.98 7.99 87.90 0.70 16.69 16 19 O -0.56 -21.71 17.71 -3.04 -0.05 -21.76 16 20 N -0.57 -15.97 2.34 -627.59 -1.47 -17.44 16 21 C 0.12 3.43 5.38 38.16 0.21 3.64 16 22 C -0.10 -1.97 9.97 22.39 0.22 -1.75 16 23 C -0.10 -1.46 10.04 22.25 0.22 -1.24 16 24 C -0.10 -1.47 10.04 22.29 0.22 -1.24 16 25 C -0.12 -2.72 9.82 22.27 0.22 -2.50 16 26 C -0.06 -1.95 6.34 22.44 0.14 -1.81 16 27 Cl -0.07 -2.55 27.21 -2.72 -0.07 -2.62 16 28 C 0.12 2.98 6.60 86.83 0.57 3.56 16 29 H 0.11 3.62 3.63 -2.39 -0.01 3.61 16 30 H 0.16 3.32 4.57 -2.39 -0.01 3.31 16 31 H 0.28 14.71 8.31 -92.71 -0.77 13.94 16 32 H 0.11 2.63 6.15 -2.39 -0.01 2.61 16 33 H 0.17 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 35 H 0.17 1.09 8.06 -2.91 -0.02 1.06 16 36 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 37 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 38 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.07 2.25 7.02 -2.39 -0.02 2.24 16 Total: -1.00 -81.95 349.87 6.60 -75.35 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 1.09 Total: 16.20 kcal Atomic # 6 Polarization: 20.72 SS G_CDS: 6.15 Total: 26.87 kcal Atomic # 7 Polarization: -103.49 SS G_CDS: -2.19 Total: -105.68 kcal Atomic # 8 Polarization: -48.42 SS G_CDS: -0.10 Total: -48.52 kcal Atomic # 14 Polarization: 36.68 SS G_CDS: 1.71 Total: 38.40 kcal Atomic # 17 Polarization: -2.55 SS G_CDS: -0.07 Total: -2.62 kcal Total: -81.95 6.60 -75.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126630578.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.154 kcal (2) G-P(sol) polarization free energy of solvation -81.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds