Wall clock time and date at job start Wed Apr 1 2020 03:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46856 * 2 1 4 4 N 1.46500 * 109.47173 * 183.41529 * 3 2 1 5 5 C 1.36936 * 119.99910 * 273.61127 * 4 3 2 6 6 H 1.08000 * 120.00240 * 137.76892 * 5 4 3 7 7 C 1.38813 * 119.99846 * 317.77611 * 5 4 3 8 8 N 1.31625 * 120.00057 * 157.81747 * 7 5 4 9 9 Si 1.86803 * 120.00037 * 337.81469 * 7 5 4 10 10 H 1.48497 * 109.47080 * 95.58178 * 9 7 5 11 11 H 1.48504 * 109.46889 * 215.58433 * 9 7 5 12 12 H 1.48498 * 109.46907 * 335.58123 * 9 7 5 13 13 S 1.65593 * 120.00309 * 93.61110 * 4 3 2 14 14 O 1.42104 * 106.40511 * 156.45793 * 13 4 3 15 15 O 1.42098 * 106.40439 * 23.53897 * 13 4 3 16 16 C 1.76202 * 107.22042 * 269.99851 * 13 4 3 17 17 C 1.38255 * 120.00278 * 269.98022 * 16 13 4 18 18 C 1.38213 * 119.99825 * 179.97438 * 17 16 13 19 19 C 1.38255 * 120.00248 * 359.97438 * 18 17 16 20 20 C 1.38205 * 120.00015 * 0.09523 * 19 18 17 21 21 S 1.76208 * 120.00000 * 179.97438 * 20 19 18 22 22 C 1.81395 * 104.44854 * 269.90909 * 21 20 19 23 23 O 1.42096 * 104.27499 * 25.98302 * 21 20 19 24 24 O 1.42101 * 104.27681 * 153.83778 * 21 20 19 25 25 C 1.38220 * 119.99517 * 89.99640 * 16 13 4 26 26 H 1.08993 * 109.47588 * 300.00051 * 1 2 3 27 27 H 1.09001 * 109.46992 * 60.00537 * 1 2 3 28 28 H 1.09003 * 109.46537 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47854 * 240.00372 * 2 1 3 30 30 H 1.08996 * 109.47431 * 119.99358 * 2 1 3 31 31 H 1.09002 * 109.46998 * 63.41279 * 3 2 1 32 32 H 1.09002 * 109.47306 * 303.41274 * 3 2 1 33 33 H 0.97000 * 120.00279 * 179.97438 * 8 7 5 34 34 H 1.08000 * 119.99583 * 359.97438 * 17 16 13 35 35 H 1.08003 * 119.99576 * 180.02562 * 18 17 16 36 36 H 1.07998 * 119.99821 * 180.02562 * 19 18 17 37 37 H 1.09003 * 109.47227 * 59.99938 * 22 21 20 38 38 H 1.08999 * 109.47282 * 180.02562 * 22 21 20 39 39 H 1.09000 * 109.47227 * 299.99855 * 22 21 20 40 40 H 1.07997 * 120.00103 * 359.70444 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5026 1.4435 -0.0823 5 6 4.2526 1.3457 1.0592 6 1 5.1253 0.7097 1.0792 7 6 3.8912 2.0640 2.1908 8 7 4.3028 1.6725 3.3781 9 14 2.8207 3.5862 2.0284 10 1 1.4000 3.2189 2.2561 11 1 3.2387 4.5949 3.0350 12 1 2.9726 4.1550 0.6651 13 16 4.2490 1.5627 -1.5556 14 8 5.5477 2.0832 -1.3067 15 8 3.3165 2.1852 -2.4287 16 6 4.4774 -0.0770 -2.1589 17 6 5.6359 -0.7691 -1.8585 18 6 5.8147 -2.0554 -2.3313 19 6 4.8348 -2.6503 -3.1043 20 6 3.6773 -1.9580 -3.4058 21 16 2.4288 -2.7159 -4.3915 22 6 2.8653 -2.2716 -6.0951 23 8 2.6107 -4.1088 -4.1771 24 8 1.2285 -2.0648 -3.9982 25 6 3.4983 -0.6712 -2.9328 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 1.8934 -0.5137 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.7274 1.9384 0.9190 32 1 1.6275 1.9738 -0.8578 33 1 4.0506 2.1745 4.1688 34 1 6.4011 -0.3045 -1.2544 35 1 6.7196 -2.5962 -2.0963 36 1 4.9744 -3.6557 -3.4733 37 1 3.8578 -2.6573 -6.3283 38 1 2.1368 -2.7036 -6.7813 39 1 2.8633 -1.1866 -6.1995 40 1 2.5914 -0.1322 -3.1637 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128057412.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:01 Heat of formation + Delta-G solvation = -101.913157 kcal Electronic energy + Delta-G solvation = -27602.350613 eV Core-core repulsion = 23637.489335 eV Total energy + Delta-G solvation = -3964.861279 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -39.19135 -37.27336 -36.59857 -36.27781 -36.10300 -34.95132 -32.81108 -31.54729 -31.37878 -31.26701 -29.77241 -25.93787 -23.90963 -23.48875 -23.21535 -21.14438 -19.64019 -18.60175 -18.17834 -17.16815 -16.61427 -16.44251 -16.23822 -16.09610 -15.86854 -15.42586 -15.06725 -14.20944 -14.09555 -14.03250 -13.65908 -13.48816 -13.35150 -13.19207 -13.03367 -12.53525 -12.39747 -12.32067 -12.24310 -12.06597 -12.00497 -11.70917 -11.33733 -11.30993 -11.20868 -10.96225 -10.93075 -10.91121 -10.76042 -10.50416 -10.29496 -10.05950 -9.82693 -9.65259 -9.31042 -8.90438 -8.10628 -6.47413 -4.09374 -0.15905 0.61698 0.93832 1.24945 2.64414 3.11016 3.13932 3.26769 3.34042 3.71714 3.89421 3.97895 4.19544 4.45790 4.47516 4.55358 4.74298 4.77310 4.86494 5.01666 5.07648 5.32389 5.34471 5.53972 5.56569 5.64162 5.71679 5.79745 5.85337 6.01746 6.07488 6.10264 6.29431 6.35626 6.48242 6.65110 6.70375 6.83813 7.12014 7.61407 8.19414 9.03120 9.08188 10.61709 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.015797 B = 0.004488 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.026499 B = 6237.782552 C = 6814.718461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.140 4.140 3 C 0.111 3.889 4 N -0.863 5.863 5 C -0.291 4.291 6 H 0.103 0.897 7 C 0.075 3.925 8 N -0.853 5.853 9 Si 0.870 3.130 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.262 1.262 13 S 2.626 3.374 14 O -0.959 6.959 15 O -0.994 6.994 16 C -0.670 4.670 17 C 0.039 3.961 18 C -0.160 4.160 19 C 0.015 3.985 20 C -0.686 4.686 21 S 2.500 3.500 22 C -0.652 4.652 23 O -0.939 6.939 24 O -0.930 6.930 25 C 0.068 3.932 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.276 0.724 34 H 0.150 0.850 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.881 -8.510 -14.552 16.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.180 4.180 3 C -0.015 4.015 4 N -0.695 5.695 5 C -0.428 4.428 6 H 0.120 0.880 7 C -0.136 4.136 8 N -0.490 5.490 9 Si 0.697 3.303 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.186 1.186 13 S 2.724 3.276 14 O -0.949 6.949 15 O -0.983 6.983 16 C -0.754 4.754 17 C 0.020 3.980 18 C -0.179 4.179 19 C -0.004 4.004 20 C -0.773 4.773 21 S 2.679 3.321 22 C -0.802 4.802 23 O -0.936 6.936 24 O -0.927 6.927 25 C 0.048 3.952 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.168 0.832 35 H 0.157 0.843 36 H 0.162 0.838 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.153 0.847 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.266 -8.232 -14.672 16.975 hybrid contribution 0.312 0.523 -0.012 0.609 sum -1.954 -7.708 -14.684 16.699 Atomic orbital electron populations 1.21726 0.96109 1.01409 1.01560 1.21946 0.95164 0.98090 1.02755 1.21603 0.80836 0.96625 1.02440 1.52882 1.10602 1.86653 1.19339 1.18616 1.12217 1.25182 0.86762 0.87953 1.25457 0.96574 0.96630 0.94907 1.69828 1.43613 1.37732 0.97868 0.87003 0.80236 0.83880 0.79202 1.19714 1.21194 1.18570 1.05319 0.74221 0.73526 0.74487 1.93471 1.40832 1.75784 1.84778 1.93430 1.63704 1.73149 1.68035 1.31657 1.02323 1.28330 1.13094 1.21360 0.94052 0.92927 0.89672 1.21415 1.00330 0.95883 1.00317 1.21114 0.90145 0.98005 0.91162 1.30586 1.17188 1.07191 1.22381 1.05193 0.74769 0.74816 0.77324 1.30250 1.12853 1.13393 1.23719 1.93577 1.86070 1.29369 1.84569 1.93617 1.42233 1.76341 1.80523 1.20714 0.95984 0.91280 0.87191 0.92865 0.92732 0.92844 0.92709 0.90460 0.91014 0.90656 0.91403 0.83239 0.84261 0.83810 0.85000 0.84958 0.84691 0.82825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.91 37.16 0.37 -1.98 16 2 C -0.14 -2.59 6.25 -26.73 -0.17 -2.76 16 3 C 0.11 2.33 4.58 -4.04 -0.02 2.31 16 4 N -0.86 -19.83 2.37 -59.90 -0.14 -19.97 16 5 C -0.29 -7.44 9.27 -15.06 -0.14 -7.58 16 6 H 0.10 2.71 8.06 -52.49 -0.42 2.29 16 7 C 0.08 1.98 5.30 -17.43 -0.09 1.88 16 8 N -0.85 -23.26 13.97 55.49 0.78 -22.48 16 9 Si 0.87 20.51 25.26 -169.99 -4.29 16.21 16 10 H -0.27 -5.98 6.71 56.52 0.38 -5.60 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.26 -6.25 7.11 56.52 0.40 -5.85 16 13 S 2.63 56.82 5.65 -107.50 -0.61 56.21 16 14 O -0.96 -23.00 16.50 -57.17 -0.94 -23.95 16 15 O -0.99 -22.05 15.85 -57.17 -0.91 -22.96 16 16 C -0.67 -11.92 5.97 -39.58 -0.24 -12.16 16 17 C 0.04 0.61 9.52 -39.58 -0.38 0.24 16 18 C -0.16 -2.01 10.05 -39.58 -0.40 -2.41 16 19 C 0.01 0.17 9.47 -39.59 -0.37 -0.20 16 20 C -0.69 -8.92 5.66 -39.58 -0.22 -9.15 16 21 S 2.50 26.55 5.80 -107.50 -0.62 25.93 16 22 C -0.65 -3.88 10.79 101.05 1.09 -2.78 16 23 O -0.94 -12.02 17.12 -57.54 -0.99 -13.01 16 24 O -0.93 -13.09 17.13 -57.54 -0.99 -14.07 16 25 C 0.07 1.08 7.67 -39.58 -0.30 0.78 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.97 6.81 -51.93 -0.35 0.62 16 30 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.07 1.55 3.73 -51.93 -0.19 1.35 16 32 H 0.08 1.48 6.94 -51.93 -0.36 1.12 16 33 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.15 2.31 7.62 -52.49 -0.40 1.91 16 35 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 36 H 0.14 1.26 7.57 -52.49 -0.40 0.86 16 37 H 0.13 0.54 8.14 -51.92 -0.42 0.11 16 38 H 0.13 0.53 8.14 -51.92 -0.42 0.11 16 39 H 0.13 0.70 8.14 -51.92 -0.42 0.28 16 40 H 0.15 2.33 7.13 -52.49 -0.37 1.95 16 LS Contribution 356.23 15.07 5.37 5.37 Total: -1.00 -34.67 356.23 -9.26 -43.93 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -5.04 Total: 2.59 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: -0.87 Total: -33.81 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: 0.63 Total: -42.46 kcal Atomic # 8 Polarization: -70.16 SS G_CDS: -3.82 Total: -73.98 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.29 Total: 16.21 kcal Atomic # 16 Polarization: 83.38 SS G_CDS: -1.23 Total: 82.15 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.67 -9.26 -43.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128057412.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.985 kcal (2) G-P(sol) polarization free energy of solvation -34.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds