Wall clock time and date at job start Wed Apr 1 2020 04:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31290 * 1 3 3 Si 1.86802 * 120.00088 * 2 1 4 4 H 1.48507 * 109.47134 * 274.98209 * 3 2 1 5 5 H 1.48499 * 109.47007 * 34.97988 * 3 2 1 6 6 H 1.48499 * 109.47029 * 154.98495 * 3 2 1 7 7 C 1.38983 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00037 * 185.95013 * 7 2 1 9 9 N 1.37325 * 120.00186 * 5.94262 * 7 2 1 10 10 C 1.36494 * 126.06976 * 174.43237 * 9 7 2 11 11 C 1.35683 * 107.50608 * 180.18353 * 10 9 7 12 12 N 1.40589 * 126.07895 * 179.84082 * 11 10 9 13 13 C 1.34785 * 119.99637 * 179.97438 * 12 11 10 14 14 O 1.21301 * 119.99884 * 359.72671 * 13 12 11 15 15 C 1.50697 * 119.99508 * 179.72622 * 13 12 11 16 16 H 1.08997 * 109.69915 * 59.44988 * 15 13 12 17 17 C 1.53402 * 109.69938 * 298.85120 * 15 13 12 18 18 O 1.42824 * 108.36680 * 175.56560 * 17 15 13 19 19 C 1.35869 * 117.85064 * 49.20932 * 18 17 15 20 20 C 1.39139 * 118.48030 * 162.91501 * 19 18 17 21 21 C 1.37962 * 120.23351 * 179.76916 * 20 19 18 22 22 C 1.38385 * 119.94702 * 0.02562 * 21 20 19 23 23 Cl 1.73595 * 120.02684 * 180.02562 * 22 21 20 24 24 C 1.38208 * 119.95456 * 0.08082 * 22 21 20 25 25 C 1.38370 * 121.80174 * 342.83187 * 19 18 17 26 26 C 1.50771 * 121.40863 * 0.33846 * 25 19 18 27 27 C 1.40647 * 107.83197 * 359.58081 * 11 10 9 28 28 N 1.30899 * 108.39301 * 0.26418 * 27 11 10 29 29 H 0.97005 * 120.00457 * 359.97438 * 1 2 3 30 30 H 1.07995 * 126.24724 * 0.05122 * 10 9 7 31 31 H 0.96997 * 120.00381 * 359.72236 * 12 11 10 32 32 H 1.09007 * 109.68705 * 295.27567 * 17 15 13 33 33 H 1.08997 * 109.68637 * 55.83830 * 17 15 13 34 34 H 1.08001 * 119.88056 * 359.80330 * 20 19 18 35 35 H 1.08004 * 120.02772 * 179.97438 * 21 20 19 36 36 H 1.08002 * 119.84558 * 179.97438 * 24 22 21 37 37 H 1.09004 * 109.43318 * 222.25431 * 26 25 19 38 38 H 1.09004 * 109.43035 * 102.39815 * 26 25 19 39 39 H 1.08008 * 125.80170 * 180.28591 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.3892 2.1072 -1.3948 5 1 1.5010 2.6200 0.8026 6 1 3.5932 1.4120 0.5920 7 6 2.0078 -1.2036 -0.0005 8 1 3.0835 -1.2062 0.0964 9 7 1.3268 -2.3897 -0.1242 10 6 1.8862 -3.6287 -0.2464 11 6 0.8732 -4.5258 -0.3468 12 7 1.0111 -5.9174 -0.4914 13 6 -0.0845 -6.6975 -0.5796 14 8 -1.1894 -6.1994 -0.5293 15 6 0.0633 -8.1885 -0.7408 16 1 0.6155 -8.5966 0.1057 17 6 0.8117 -8.4961 -2.0441 18 8 1.0271 -9.9061 -2.1173 19 6 -0.0352 -10.7230 -1.8933 20 6 0.0498 -12.0497 -2.3041 21 6 -1.0057 -12.9120 -2.0903 22 6 -2.1538 -12.4572 -1.4658 23 17 -3.4829 -13.5406 -1.1953 24 6 -2.2421 -11.1394 -1.0586 25 6 -1.1851 -10.2698 -1.2713 26 6 -1.3204 -8.8389 -0.8159 27 6 -0.3391 -3.8164 -0.2745 28 7 -0.0654 -2.5433 -0.1419 29 1 -0.4851 0.8400 0.0004 30 1 2.9423 -3.8536 -0.2626 31 1 1.8946 -6.3158 -0.5314 32 1 0.2142 -8.1713 -2.8960 33 1 1.7703 -7.9774 -2.0482 34 1 0.9454 -12.4057 -2.7914 35 1 -0.9363 -13.9410 -2.4109 36 1 -3.1391 -10.7862 -0.5717 37 1 -1.7867 -8.8143 0.1690 38 1 -1.9412 -8.2901 -1.5242 39 1 -1.3278 -4.2488 -0.3203 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139606940.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:46 Heat of formation + Delta-G solvation = 26.131158 kcal Electronic energy + Delta-G solvation = -26444.222700 eV Core-core repulsion = 22379.718933 eV Total energy + Delta-G solvation = -4064.503767 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.23613 -39.93420 -38.78787 -37.96958 -36.47793 -34.53718 -34.23779 -33.22938 -31.19707 -30.41727 -30.24148 -27.85962 -26.02781 -25.26972 -24.28857 -23.02981 -21.53757 -20.84549 -19.76252 -19.46627 -18.20808 -17.76146 -17.27104 -16.66337 -16.24108 -15.53517 -15.40982 -15.24859 -15.04273 -14.48788 -14.30382 -14.01075 -13.90372 -13.73158 -13.57688 -13.29147 -13.03962 -12.91604 -12.72474 -12.48039 -11.81348 -11.69471 -11.50714 -11.37900 -11.29636 -11.12222 -11.00245 -10.96149 -10.80320 -10.55968 -10.24733 -9.33506 -9.22405 -9.19824 -8.86247 -8.40467 -8.11773 -6.78006 -6.60833 -4.28127 0.85448 0.89307 1.87089 2.65132 2.89271 2.97412 3.02107 3.07703 3.25374 3.42871 3.60462 3.82226 4.24496 4.28713 4.35819 4.40411 4.55547 4.65662 4.76327 4.86513 4.96673 4.97252 5.05461 5.18426 5.27546 5.34837 5.54731 5.64032 5.69986 5.86037 5.90434 6.03719 6.18285 6.21405 6.38707 6.82373 6.89629 7.01384 7.03960 7.17838 7.80706 8.06574 8.20925 8.54644 8.73980 9.32419 9.61192 10.35378 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.035819 B = 0.001835 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.513187 B =15258.297276 C =15919.172940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.324 4.324 8 H 0.117 0.883 9 N -0.142 5.142 10 C -0.082 4.082 11 C -0.064 4.064 12 N -0.621 5.621 13 C 0.506 3.494 14 O -0.528 6.528 15 C -0.142 4.142 16 H 0.110 0.890 17 C 0.071 3.929 18 O -0.307 6.307 19 C 0.135 3.865 20 C -0.136 4.136 21 C -0.081 4.081 22 C -0.066 4.066 23 Cl -0.074 7.074 24 C -0.073 4.073 25 C -0.140 4.140 26 C -0.061 4.061 27 C -0.032 4.032 28 N -0.261 5.261 29 H 0.275 0.725 30 H 0.146 0.854 31 H 0.397 0.603 32 H 0.076 0.924 33 H 0.116 0.884 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.338 -22.457 -3.766 22.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.134 0.866 9 N 0.091 4.909 10 C -0.233 4.233 11 C -0.169 4.169 12 N -0.263 5.263 13 C 0.291 3.709 14 O -0.405 6.405 15 C -0.164 4.164 16 H 0.128 0.872 17 C -0.004 4.004 18 O -0.221 6.221 19 C 0.089 3.911 20 C -0.154 4.154 21 C -0.100 4.100 22 C -0.093 4.093 23 Cl -0.045 7.045 24 C -0.092 4.092 25 C -0.141 4.141 26 C -0.098 4.098 27 C -0.207 4.207 28 N -0.092 5.092 29 H 0.086 0.914 30 H 0.163 0.837 31 H 0.230 0.770 32 H 0.094 0.906 33 H 0.134 0.866 34 H 0.158 0.842 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -0.067 -20.888 -3.618 21.199 hybrid contribution 1.038 -0.322 0.055 1.088 sum 0.971 -21.210 -3.563 21.529 Atomic orbital electron populations 1.70217 1.06172 1.28059 1.35056 1.25650 0.95697 1.00317 0.95427 0.85810 0.79459 0.79997 0.78884 1.19614 1.20075 1.18760 1.19889 0.92164 0.80683 1.52884 0.86561 1.44564 1.04004 1.03722 1.38606 1.21267 0.96833 0.85799 1.19421 1.17258 0.94345 0.81570 1.23767 1.42519 1.08094 1.05416 1.70243 1.19835 0.84780 0.87297 0.79021 1.90620 1.25476 1.74371 1.49991 1.21952 0.99383 0.94511 1.00520 0.87201 1.23035 1.02364 0.78509 0.96537 1.86038 1.32475 1.17570 1.86001 1.18790 0.86872 0.90725 0.94681 1.20527 1.00183 0.91129 1.03607 1.20797 0.91212 1.00184 0.97813 1.20711 0.90968 0.91719 1.05897 1.98365 1.46663 1.64097 1.95395 1.20807 0.98734 0.90901 0.98719 1.19857 0.94256 0.97251 1.02721 1.20336 0.95906 0.89553 1.03976 1.24102 0.97951 0.90954 1.07705 1.78259 0.90307 1.15105 1.25556 0.91415 0.83668 0.76996 0.90565 0.86592 0.84203 0.84397 0.84467 0.88870 0.88489 0.80756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.21 11.84 55.49 0.66 -20.55 16 2 C 0.05 1.18 5.50 -17.51 -0.10 1.09 16 3 Si 0.93 18.63 29.56 -169.99 -5.02 13.60 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 7 C -0.32 -8.41 10.24 -14.81 -0.15 -8.56 16 8 H 0.12 2.69 7.84 -52.48 -0.41 2.28 16 9 N -0.14 -3.80 3.74 -11.41 -0.04 -3.84 16 10 C -0.08 -1.86 11.49 -16.39 -0.19 -2.05 16 11 C -0.06 -1.40 6.90 -83.84 -0.58 -1.98 16 12 N -0.62 -10.00 5.35 -10.00 -0.05 -10.05 16 13 C 0.51 7.88 7.12 -10.98 -0.08 7.80 16 14 O -0.53 -10.37 12.94 5.54 0.07 -10.30 16 15 C -0.14 -1.56 2.76 -91.53 -0.25 -1.81 16 16 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 17 C 0.07 0.68 6.26 37.37 0.23 0.92 16 18 O -0.31 -3.17 10.27 -19.33 -0.20 -3.36 16 19 C 0.13 1.39 6.47 -39.20 -0.25 1.13 16 20 C -0.14 -1.18 9.93 -39.35 -0.39 -1.57 16 21 C -0.08 -0.67 9.83 -39.63 -0.39 -1.06 16 22 C -0.07 -0.61 6.32 -39.54 -0.25 -0.86 16 23 Cl -0.07 -0.65 28.96 -51.86 -1.50 -2.15 16 24 C -0.07 -0.71 9.45 -39.49 -0.37 -1.08 16 25 C -0.14 -1.44 5.75 -104.44 -0.60 -2.04 16 26 C -0.06 -0.67 4.67 -27.81 -0.13 -0.80 16 27 C -0.03 -0.81 10.85 -17.04 -0.18 -0.99 16 28 N -0.26 -7.46 10.42 30.80 0.32 -7.13 16 29 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.15 2.71 8.06 -52.49 -0.42 2.29 16 31 H 0.40 4.75 8.30 -40.82 -0.34 4.41 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.12 0.90 7.57 -51.93 -0.39 0.50 16 34 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 35 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 36 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.10 1.18 7.69 -51.93 -0.40 0.78 16 39 H 0.18 4.41 5.92 -52.48 -0.31 4.10 16 LS Contribution 350.19 15.07 5.28 5.28 Total: -1.00 -32.61 350.19 -8.12 -40.74 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -3.95 Total: 9.66 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -3.68 Total: -11.88 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.88 Total: -41.58 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.13 Total: -13.67 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.02 Total: 13.60 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.61 -8.12 -40.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139606940.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.869 kcal (2) G-P(sol) polarization free energy of solvation -32.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds