Wall clock time and date at job start Wed Apr 1 2020 04:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31290 * 1 3 3 Si 1.86802 * 120.00088 * 2 1 4 4 H 1.48507 * 109.47134 * 274.98209 * 3 2 1 5 5 H 1.48499 * 109.47007 * 34.97988 * 3 2 1 6 6 H 1.48499 * 109.47029 * 154.98495 * 3 2 1 7 7 C 1.38983 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00037 * 185.95013 * 7 2 1 9 9 N 1.37325 * 120.00186 * 5.94262 * 7 2 1 10 10 C 1.36494 * 126.06976 * 174.43237 * 9 7 2 11 11 C 1.35683 * 107.50608 * 180.18353 * 10 9 7 12 12 N 1.40589 * 126.07895 * 179.84082 * 11 10 9 13 13 C 1.34785 * 119.99637 * 179.97438 * 12 11 10 14 14 O 1.21301 * 119.99884 * 359.72671 * 13 12 11 15 15 C 1.50697 * 119.99508 * 179.72622 * 13 12 11 16 16 H 1.08997 * 109.69915 * 59.44988 * 15 13 12 17 17 C 1.53402 * 109.69938 * 298.85120 * 15 13 12 18 18 O 1.42824 * 108.36680 * 175.56560 * 17 15 13 19 19 C 1.35869 * 117.85064 * 49.20932 * 18 17 15 20 20 C 1.39139 * 118.48030 * 162.91501 * 19 18 17 21 21 C 1.37962 * 120.23351 * 179.76916 * 20 19 18 22 22 C 1.38385 * 119.94702 * 0.02562 * 21 20 19 23 23 Cl 1.73595 * 120.02684 * 180.02562 * 22 21 20 24 24 C 1.38208 * 119.95456 * 0.08082 * 22 21 20 25 25 C 1.38370 * 121.80174 * 342.83187 * 19 18 17 26 26 C 1.50771 * 121.40863 * 0.33846 * 25 19 18 27 27 C 1.40647 * 107.83197 * 359.58081 * 11 10 9 28 28 N 1.30899 * 108.39301 * 0.26418 * 27 11 10 29 29 H 0.97005 * 120.00457 * 359.97438 * 1 2 3 30 30 H 1.07995 * 126.24724 * 0.05122 * 10 9 7 31 31 H 0.96997 * 120.00381 * 359.72236 * 12 11 10 32 32 H 1.09007 * 109.68705 * 295.27567 * 17 15 13 33 33 H 1.08997 * 109.68637 * 55.83830 * 17 15 13 34 34 H 1.08001 * 119.88056 * 359.80330 * 20 19 18 35 35 H 1.08004 * 120.02772 * 179.97438 * 21 20 19 36 36 H 1.08002 * 119.84558 * 179.97438 * 24 22 21 37 37 H 1.09004 * 109.43318 * 222.25431 * 26 25 19 38 38 H 1.09004 * 109.43035 * 102.39815 * 26 25 19 39 39 H 1.08008 * 125.80170 * 180.28591 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.3892 2.1072 -1.3948 5 1 1.5010 2.6200 0.8026 6 1 3.5932 1.4120 0.5920 7 6 2.0078 -1.2036 -0.0005 8 1 3.0835 -1.2062 0.0964 9 7 1.3268 -2.3897 -0.1242 10 6 1.8862 -3.6287 -0.2464 11 6 0.8732 -4.5258 -0.3468 12 7 1.0111 -5.9174 -0.4914 13 6 -0.0845 -6.6975 -0.5796 14 8 -1.1894 -6.1994 -0.5293 15 6 0.0633 -8.1885 -0.7408 16 1 0.6155 -8.5966 0.1057 17 6 0.8117 -8.4961 -2.0441 18 8 1.0271 -9.9061 -2.1173 19 6 -0.0352 -10.7230 -1.8933 20 6 0.0498 -12.0497 -2.3041 21 6 -1.0057 -12.9120 -2.0903 22 6 -2.1538 -12.4572 -1.4658 23 17 -3.4829 -13.5406 -1.1953 24 6 -2.2421 -11.1394 -1.0586 25 6 -1.1851 -10.2698 -1.2713 26 6 -1.3204 -8.8389 -0.8159 27 6 -0.3391 -3.8164 -0.2745 28 7 -0.0654 -2.5433 -0.1419 29 1 -0.4851 0.8400 0.0004 30 1 2.9423 -3.8536 -0.2626 31 1 1.8946 -6.3158 -0.5314 32 1 0.2142 -8.1713 -2.8960 33 1 1.7703 -7.9774 -2.0482 34 1 0.9454 -12.4057 -2.7914 35 1 -0.9363 -13.9410 -2.4109 36 1 -3.1391 -10.7862 -0.5717 37 1 -1.7867 -8.8143 0.1690 38 1 -1.9412 -8.2901 -1.5242 39 1 -1.3278 -4.2488 -0.3203 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139606940.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:45 Heat of formation + Delta-G solvation = 5.857822 kcal Electronic energy + Delta-G solvation = -26445.101818 eV Core-core repulsion = 22379.718933 eV Total energy + Delta-G solvation = -4065.382885 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.16304 -41.53092 -40.20451 -38.76253 -37.18308 -36.00888 -35.32113 -34.95324 -32.34655 -31.88787 -31.14010 -29.57332 -27.04633 -26.72743 -25.46671 -23.75858 -22.96839 -22.37029 -21.27708 -20.76483 -19.38744 -18.93435 -18.43179 -17.54552 -17.44010 -17.15782 -16.75309 -16.42992 -16.01276 -15.69673 -15.45143 -15.24372 -15.03223 -14.87643 -14.72248 -14.57103 -14.27906 -14.08354 -13.51227 -13.47743 -13.33306 -13.25855 -12.96101 -12.80078 -12.52561 -12.19500 -12.06931 -11.89367 -11.82894 -11.73495 -11.58309 -11.02563 -10.83411 -10.68916 -10.09886 -9.93349 -9.14509 -8.53589 -8.47234 -6.24115 0.13179 0.18412 1.16865 1.19216 1.40240 1.47739 1.58167 1.85619 1.99013 2.14085 2.27569 2.50063 2.56338 2.90428 3.08520 3.38627 3.48816 3.60147 3.74221 3.89594 4.06035 4.13827 4.32370 4.40854 4.44815 4.47768 4.53535 4.63036 4.84080 4.85540 4.93051 5.00606 5.01558 5.08793 5.21725 5.27253 5.30157 5.45277 5.52701 5.96609 6.26910 6.31887 6.70920 6.74359 7.34555 7.47497 7.69005 8.52330 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.035819 B = 0.001835 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.513187 B =15258.297276 C =15919.172940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C -0.007 4.007 3 Si 1.018 2.982 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.242 1.242 7 C -0.354 4.354 8 H 0.141 0.859 9 N -0.170 5.170 10 C -0.077 4.077 11 C -0.045 4.045 12 N -0.611 5.611 13 C 0.509 3.491 14 O -0.569 6.569 15 C -0.125 4.125 16 H 0.133 0.867 17 C 0.073 3.927 18 O -0.306 6.306 19 C 0.120 3.880 20 C -0.134 4.134 21 C -0.076 4.076 22 C -0.073 4.073 23 Cl -0.072 7.072 24 C -0.082 4.082 25 C -0.148 4.148 26 C -0.059 4.059 27 C -0.059 4.059 28 N -0.313 5.313 29 H 0.276 0.724 30 H 0.190 0.810 31 H 0.421 0.579 32 H 0.070 0.930 33 H 0.141 0.859 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.140 0.860 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.136 -24.375 -4.203 25.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.218 4.218 3 Si 0.837 3.163 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.165 1.165 7 C -0.485 4.485 8 H 0.159 0.841 9 N 0.061 4.939 10 C -0.227 4.227 11 C -0.151 4.151 12 N -0.256 5.256 13 C 0.297 3.703 14 O -0.448 6.448 15 C -0.147 4.147 16 H 0.150 0.850 17 C -0.002 4.002 18 O -0.220 6.220 19 C 0.075 3.925 20 C -0.152 4.152 21 C -0.095 4.095 22 C -0.100 4.100 23 Cl -0.043 7.043 24 C -0.100 4.100 25 C -0.149 4.149 26 C -0.096 4.096 27 C -0.234 4.234 28 N -0.145 5.145 29 H 0.085 0.915 30 H 0.207 0.793 31 H 0.259 0.741 32 H 0.088 0.912 33 H 0.159 0.841 34 H 0.179 0.821 35 H 0.180 0.820 36 H 0.158 0.842 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 2.771 -22.872 -4.058 23.394 hybrid contribution 0.101 0.026 0.173 0.202 sum 2.872 -22.845 -3.885 23.351 Atomic orbital electron populations 1.70399 1.08442 1.29050 1.37441 1.26870 0.96440 1.04351 0.94187 0.84593 0.78577 0.74261 0.78884 1.19230 1.20296 1.16477 1.20608 0.93408 0.81037 1.53438 0.84124 1.44843 1.03558 1.05261 1.40194 1.22038 0.98901 0.84523 1.17244 1.17304 0.92665 0.84152 1.21011 1.42445 1.09824 1.03047 1.70323 1.20647 0.83770 0.89016 0.76915 1.90617 1.27301 1.75614 1.51294 1.21865 0.99973 0.90401 1.02464 0.84954 1.23096 1.03283 0.78723 0.95116 1.86051 1.32397 1.17469 1.86060 1.19014 0.86835 0.91471 0.95184 1.20802 1.00979 0.90430 1.02993 1.21097 0.90424 1.01256 0.96688 1.20852 0.91504 0.91607 1.06055 1.98367 1.46667 1.63874 1.95399 1.20901 0.98829 0.91304 0.99001 1.19757 0.94881 0.96622 1.03653 1.20255 0.95721 0.90214 1.03425 1.24173 0.99066 0.91123 1.09039 1.78150 0.92307 1.16748 1.27278 0.91456 0.79329 0.74114 0.91153 0.84121 0.82133 0.82045 0.84196 0.89215 0.90237 0.81581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.41 11.84 21.66 0.26 -47.16 16 2 C -0.01 -0.36 5.50 84.95 0.47 0.11 16 3 Si 1.02 38.16 29.56 68.60 2.03 40.18 16 4 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 5 H -0.28 -10.36 7.11 99.48 0.71 -9.65 16 6 H -0.24 -8.12 7.11 99.48 0.71 -7.41 16 7 C -0.35 -18.41 10.24 84.01 0.86 -17.55 16 8 H 0.14 6.30 7.84 -2.91 -0.02 6.28 16 9 N -0.17 -9.20 3.74 -190.01 -0.71 -9.91 16 10 C -0.08 -3.38 11.49 83.38 0.96 -2.42 16 11 C -0.05 -1.96 6.90 37.73 0.26 -1.70 16 12 N -0.61 -18.56 5.35 -303.92 -1.63 -20.18 16 13 C 0.51 15.43 7.12 87.65 0.62 16.06 16 14 O -0.57 -22.89 12.94 -3.10 -0.04 -22.93 16 15 C -0.13 -2.54 2.76 -11.38 -0.03 -2.57 16 16 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 17 C 0.07 1.23 6.26 72.12 0.45 1.68 16 18 O -0.31 -5.46 10.27 -92.08 -0.95 -6.40 16 19 C 0.12 2.21 6.47 22.52 0.15 2.36 16 20 C -0.13 -1.96 9.93 22.42 0.22 -1.73 16 21 C -0.08 -1.06 9.83 22.24 0.22 -0.84 16 22 C -0.07 -1.24 6.32 22.30 0.14 -1.10 16 23 Cl -0.07 -1.17 28.96 -2.72 -0.08 -1.25 16 24 C -0.08 -1.51 9.45 22.33 0.21 -1.30 16 25 C -0.15 -2.90 5.75 -19.75 -0.11 -3.01 16 26 C -0.06 -1.28 4.67 29.89 0.14 -1.14 16 27 C -0.06 -3.10 10.85 85.42 0.93 -2.17 16 28 N -0.31 -18.59 10.42 -56.47 -0.59 -19.18 16 29 H 0.28 14.58 8.31 -92.70 -0.77 13.81 16 30 H 0.19 6.39 8.06 -2.91 -0.02 6.36 16 31 H 0.42 8.63 8.30 -92.71 -0.77 7.86 16 32 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.14 1.65 7.57 -2.39 -0.02 1.63 16 34 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 35 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 36 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 37 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 38 H 0.08 1.99 7.69 -2.38 -0.02 1.97 16 39 H 0.17 8.90 5.92 -2.91 -0.02 8.88 16 Total: -1.00 -74.82 350.19 4.13 -70.69 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: 0.35 Total: 31.47 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 5.48 Total: -15.33 kcal Atomic # 7 Polarization: -93.77 SS G_CDS: -2.67 Total: -96.44 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.99 Total: -29.33 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.18 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.08 Total: -1.25 kcal Total: -74.82 4.13 -70.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139606940.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.549 kcal (2) G-P(sol) polarization free energy of solvation -74.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds