Wall clock time and date at job start Wed Apr 1 2020 04:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 119.99435 * 2 1 4 4 H 1.48508 * 109.46753 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.46908 * 299.99756 * 3 2 1 6 6 H 1.48496 * 109.47382 * 60.00100 * 3 2 1 7 7 C 1.38792 * 120.00466 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00270 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.81003 * 100.00266 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47073 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00182 * 359.97438 * 11 10 9 13 13 N 1.34769 * 119.99810 * 180.02562 * 11 10 9 14 14 C 1.46506 * 120.00128 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47128 * 179.97438 * 14 13 11 16 16 H 1.09000 * 109.46957 * 304.99442 * 15 14 13 17 17 O 1.42901 * 109.47574 * 64.99436 * 15 14 13 18 18 C 1.52997 * 109.47012 * 184.99626 * 15 14 13 19 19 O 1.42899 * 109.47126 * 174.99485 * 18 15 14 20 20 C 1.35951 * 117.00028 * 179.97438 * 19 18 15 21 21 C 1.38721 * 120.01885 * 180.02562 * 20 19 18 22 22 C 1.38166 * 120.01137 * 179.72358 * 21 20 19 23 23 C 1.38413 * 120.05399 * 0.27952 * 22 21 20 24 24 F 1.35103 * 119.97861 * 179.97438 * 23 22 21 25 25 C 1.38640 * 120.03961 * 359.97438 * 23 22 21 26 26 F 1.35101 * 120.00610 * 180.02562 * 25 23 22 27 27 C 1.38362 * 119.98850 * 0.02562 * 25 23 22 28 28 H 0.96999 * 120.00431 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.46709 * 59.99713 * 10 9 7 30 30 H 1.08994 * 109.47051 * 300.00002 * 10 9 7 31 31 H 0.97000 * 120.00341 * 359.97438 * 13 11 10 32 32 H 1.08991 * 109.46990 * 59.99599 * 14 13 11 33 33 H 1.09003 * 109.46437 * 299.99620 * 14 13 11 34 34 H 0.96701 * 113.99453 * 60.00116 * 17 15 14 35 35 H 1.09006 * 109.46952 * 55.00117 * 18 15 14 36 36 H 1.09004 * 109.47213 * 295.00141 * 18 15 14 37 37 H 1.08002 * 119.99778 * 0.02562 * 21 20 19 38 38 H 1.08002 * 119.97174 * 180.25620 * 22 21 20 39 39 H 1.07996 * 120.02755 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7102 1.3466 0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3966 1.2125 7 6 2.0103 -1.2019 0.0005 8 1 3.0903 -1.2019 0.0001 9 16 1.1295 -2.7279 0.0005 10 6 2.5161 -3.8913 0.0005 11 6 1.9877 -5.3027 0.0012 12 8 0.7914 -5.5023 0.0021 13 7 2.8445 -6.3430 0.0018 14 6 2.3308 -7.7150 0.0019 15 6 3.5029 -8.6984 0.0020 16 1 4.1601 -8.4804 -0.8399 17 8 4.2339 -8.5682 1.2230 18 6 2.9701 -10.1270 -0.1236 19 8 4.0666 -11.0358 -0.2407 20 6 3.7641 -12.3558 -0.3611 21 6 4.7803 -13.2928 -0.4783 22 6 4.4728 -14.6347 -0.5950 23 6 3.1509 -15.0451 -0.6008 24 9 2.8520 -16.3576 -0.7154 25 6 2.1335 -14.1100 -0.4890 26 9 0.8434 -14.5113 -0.4943 27 6 2.4394 -12.7657 -0.3722 28 1 -0.4851 0.8400 0.0004 29 1 3.1247 -3.7311 0.8906 30 1 3.1247 -3.7312 -0.8894 31 1 3.8012 -6.1833 0.0015 32 1 1.7226 -7.8753 -0.8883 33 1 1.7219 -7.8749 0.8917 34 1 3.7103 -8.7482 2.0158 35 1 2.3391 -10.2029 -1.0093 36 1 2.3849 -10.3757 0.7618 37 1 5.8121 -12.9738 -0.4736 38 1 5.2646 -15.3641 -0.6820 39 1 1.6473 -12.0368 -0.2847 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152851554.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:01 Heat of formation + Delta-G solvation = -189.930363 kcal Electronic energy + Delta-G solvation = -25919.787141 eV Core-core repulsion = 21397.268764 eV Total energy + Delta-G solvation = -4522.518378 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.93278 -48.99576 -40.84127 -39.47985 -38.30231 -37.13223 -34.27648 -32.45788 -31.70159 -31.38108 -30.09464 -29.04933 -26.17566 -25.45416 -23.84700 -23.04015 -22.25030 -20.45330 -19.30786 -18.20275 -18.05742 -17.91513 -17.29003 -17.04329 -16.77025 -16.62952 -16.38854 -15.68809 -15.45044 -15.40136 -15.02455 -14.82914 -14.77044 -14.70622 -14.66460 -13.95890 -13.90825 -13.64344 -13.16796 -13.08949 -12.70020 -12.67906 -12.58674 -11.98732 -11.84133 -11.42640 -11.40160 -11.09051 -11.04972 -10.81649 -10.68680 -9.83838 -9.74250 -9.52820 -9.11845 -9.04585 -8.78990 -8.27587 -6.53837 -6.24697 -3.95635 0.31415 0.41597 2.23871 2.74615 2.98379 2.99598 3.19919 3.24414 3.26923 3.30952 3.61237 3.70211 3.84405 3.94273 4.17529 4.18252 4.20424 4.30138 4.32980 4.38135 4.65564 4.84103 4.88388 5.08209 5.09830 5.10862 5.21998 5.35573 5.37384 5.44894 5.50036 5.66005 5.84448 5.97652 6.10099 6.42442 6.60710 7.11688 7.56951 7.58963 8.32751 8.49563 9.21004 10.82803 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.036018 B = 0.001453 C = 0.001407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.211125 B =19268.933467 C =19895.674794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.074 0.926 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.533 3.467 12 O -0.518 6.518 13 N -0.733 5.733 14 C 0.093 3.907 15 C 0.101 3.899 16 H 0.119 0.881 17 O -0.547 6.547 18 C 0.024 3.976 19 O -0.292 6.292 20 C 0.155 3.845 21 C -0.132 4.132 22 C -0.083 4.083 23 C 0.026 3.974 24 F -0.130 7.130 25 C 0.112 3.888 26 F -0.124 7.124 27 C -0.223 4.223 28 H 0.268 0.732 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.404 0.596 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.379 0.621 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.004 -29.738 -0.432 31.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.320 3.680 12 O -0.392 6.392 13 N -0.389 5.389 14 C -0.032 4.032 15 C 0.042 3.958 16 H 0.137 0.863 17 O -0.352 6.352 18 C -0.052 4.052 19 O -0.204 6.204 20 C 0.109 3.891 21 C -0.151 4.151 22 C -0.102 4.102 23 C 0.005 3.995 24 F -0.109 7.109 25 C 0.091 3.909 26 F -0.102 7.102 27 C -0.243 4.243 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.239 0.761 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.227 0.773 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.169 0.831 38 H 0.172 0.828 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 9.430 -29.771 -0.837 31.240 hybrid contribution 1.253 0.824 0.303 1.530 sum 10.683 -28.947 -0.533 30.860 Atomic orbital electron populations 1.70021 1.05968 1.27394 1.46914 1.24993 0.95029 0.99064 0.94484 0.86107 0.79597 0.81824 0.77915 1.19590 1.20554 1.20552 1.22909 0.94974 0.91578 1.58918 0.90808 1.85389 1.04889 0.96431 1.96739 1.23527 1.06644 0.95083 1.05117 1.20350 0.86422 0.86304 0.74961 1.90707 1.15388 1.85595 1.47538 1.45828 1.10424 1.04535 1.78077 1.21771 0.95432 0.82338 1.03635 1.22132 0.94159 0.89889 0.89670 0.86301 1.86664 1.40727 1.92636 1.15175 1.23646 0.88901 0.89535 1.03110 1.86195 1.34451 1.12839 1.86937 1.18750 0.91870 0.84266 0.94251 1.20400 0.99763 0.90284 1.04615 1.20914 0.94252 0.96454 0.98607 1.17566 0.93151 0.78227 1.10532 1.91534 1.93926 1.31476 1.93937 1.17364 0.78346 0.92117 1.03051 1.91562 1.33923 1.91110 1.93624 1.21165 0.97356 0.94974 1.10778 0.92209 0.89047 0.89092 0.76119 0.90304 0.90826 0.77309 0.90039 0.90648 0.83137 0.82804 0.83040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.90 13.22 55.49 0.73 -25.16 16 2 C 0.07 2.08 5.49 -17.44 -0.10 1.98 16 3 Si 0.92 21.18 29.55 -169.99 -5.02 16.15 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 7 C -0.54 -15.07 9.50 30.94 0.29 -14.77 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 11 C 0.53 9.35 7.85 -10.99 -0.09 9.27 16 12 O -0.52 -11.15 15.86 5.56 0.09 -11.06 16 13 N -0.73 -8.72 5.50 -60.29 -0.33 -9.05 16 14 C 0.09 0.83 5.31 -4.04 -0.02 0.81 16 15 C 0.10 0.65 3.28 -26.73 -0.09 0.57 16 16 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 17 O -0.55 -4.07 13.25 -40.09 -0.53 -4.60 16 18 C 0.02 0.13 4.37 37.16 0.16 0.29 16 19 O -0.29 -2.04 10.10 -24.44 -0.25 -2.28 16 20 C 0.16 1.02 6.68 -39.24 -0.26 0.76 16 21 C -0.13 -0.72 9.98 -39.43 -0.39 -1.11 16 22 C -0.08 -0.44 10.02 -39.54 -0.40 -0.84 16 23 C 0.03 0.20 7.30 -39.37 -0.29 -0.09 16 24 F -0.13 -1.16 17.18 2.25 0.04 -1.12 16 25 C 0.11 0.90 7.30 -39.39 -0.29 0.62 16 26 F -0.12 -1.17 17.18 2.25 0.04 -1.14 16 27 C -0.22 -1.49 9.01 -39.38 -0.35 -1.84 16 28 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 30 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 31 H 0.40 3.96 8.47 -40.82 -0.35 3.61 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.38 1.73 9.05 45.56 0.41 2.15 16 35 H 0.08 0.34 7.65 -51.93 -0.40 -0.05 16 36 H 0.08 0.30 7.67 -51.93 -0.40 -0.10 16 37 H 0.15 0.57 8.06 -52.49 -0.42 0.14 16 38 H 0.15 0.43 8.06 -52.49 -0.42 0.01 16 39 H 0.15 0.78 6.30 -52.49 -0.33 0.45 16 LS Contribution 368.09 15.07 5.55 5.55 Total: -1.00 -36.00 368.09 -7.06 -43.05 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -3.56 Total: 0.63 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -1.60 Total: -7.12 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.40 Total: -34.21 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.69 Total: -17.95 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.08 Total: -2.26 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.00 -7.06 -43.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152851554.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.878 kcal (2) G-P(sol) polarization free energy of solvation -35.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds