Wall clock time and date at job start Wed Apr 1 2020 04:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 119.99435 * 2 1 4 4 H 1.48508 * 109.46753 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.46908 * 299.99756 * 3 2 1 6 6 H 1.48496 * 109.47382 * 60.00100 * 3 2 1 7 7 C 1.38792 * 120.00466 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00270 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.81003 * 100.00266 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47073 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00182 * 359.97438 * 11 10 9 13 13 N 1.34769 * 119.99810 * 180.02562 * 11 10 9 14 14 C 1.46506 * 120.00128 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47128 * 179.97438 * 14 13 11 16 16 H 1.09000 * 109.46957 * 304.99442 * 15 14 13 17 17 O 1.42901 * 109.47574 * 64.99436 * 15 14 13 18 18 C 1.52997 * 109.47012 * 184.99626 * 15 14 13 19 19 O 1.42899 * 109.47126 * 174.99485 * 18 15 14 20 20 C 1.35951 * 117.00028 * 179.97438 * 19 18 15 21 21 C 1.38721 * 120.01885 * 180.02562 * 20 19 18 22 22 C 1.38166 * 120.01137 * 179.72358 * 21 20 19 23 23 C 1.38413 * 120.05399 * 0.27952 * 22 21 20 24 24 F 1.35103 * 119.97861 * 179.97438 * 23 22 21 25 25 C 1.38640 * 120.03961 * 359.97438 * 23 22 21 26 26 F 1.35101 * 120.00610 * 180.02562 * 25 23 22 27 27 C 1.38362 * 119.98850 * 0.02562 * 25 23 22 28 28 H 0.96999 * 120.00431 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.46709 * 59.99713 * 10 9 7 30 30 H 1.08994 * 109.47051 * 300.00002 * 10 9 7 31 31 H 0.97000 * 120.00341 * 359.97438 * 13 11 10 32 32 H 1.08991 * 109.46990 * 59.99599 * 14 13 11 33 33 H 1.09003 * 109.46437 * 299.99620 * 14 13 11 34 34 H 0.96701 * 113.99453 * 60.00116 * 17 15 14 35 35 H 1.09006 * 109.46952 * 55.00117 * 18 15 14 36 36 H 1.09004 * 109.47213 * 295.00141 * 18 15 14 37 37 H 1.08002 * 119.99778 * 0.02562 * 21 20 19 38 38 H 1.08002 * 119.97174 * 180.25620 * 22 21 20 39 39 H 1.07996 * 120.02755 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7102 1.3466 0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3966 1.2125 7 6 2.0103 -1.2019 0.0005 8 1 3.0903 -1.2019 0.0001 9 16 1.1295 -2.7279 0.0005 10 6 2.5161 -3.8913 0.0005 11 6 1.9877 -5.3027 0.0012 12 8 0.7914 -5.5023 0.0021 13 7 2.8445 -6.3430 0.0018 14 6 2.3308 -7.7150 0.0019 15 6 3.5029 -8.6984 0.0020 16 1 4.1601 -8.4804 -0.8399 17 8 4.2339 -8.5682 1.2230 18 6 2.9701 -10.1270 -0.1236 19 8 4.0666 -11.0358 -0.2407 20 6 3.7641 -12.3558 -0.3611 21 6 4.7803 -13.2928 -0.4783 22 6 4.4728 -14.6347 -0.5950 23 6 3.1509 -15.0451 -0.6008 24 9 2.8520 -16.3576 -0.7154 25 6 2.1335 -14.1100 -0.4890 26 9 0.8434 -14.5113 -0.4943 27 6 2.4394 -12.7657 -0.3722 28 1 -0.4851 0.8400 0.0004 29 1 3.1247 -3.7311 0.8906 30 1 3.1247 -3.7312 -0.8894 31 1 3.8012 -6.1833 0.0015 32 1 1.7226 -7.8753 -0.8883 33 1 1.7219 -7.8749 0.8917 34 1 3.7103 -8.7482 2.0158 35 1 2.3391 -10.2029 -1.0093 36 1 2.3849 -10.3757 0.7618 37 1 5.8121 -12.9738 -0.4736 38 1 5.2646 -15.3641 -0.6820 39 1 1.6473 -12.0368 -0.2847 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152851554.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:00 Heat of formation + Delta-G solvation = -217.123112 kcal Electronic energy + Delta-G solvation = -25920.966307 eV Core-core repulsion = 21397.268764 eV Total energy + Delta-G solvation = -4523.697544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.55165 -49.62009 -41.33879 -40.65953 -38.97784 -37.71731 -35.33950 -34.58215 -32.36179 -31.96405 -30.99790 -29.97594 -27.71976 -26.80271 -24.38784 -23.56808 -22.82076 -21.73409 -19.92859 -19.75299 -18.75036 -18.59569 -17.97545 -17.76937 -17.63442 -17.36696 -17.20882 -16.87971 -16.62126 -16.55781 -16.05443 -15.75926 -15.61159 -15.60226 -15.29083 -15.14896 -14.72449 -14.41606 -14.34612 -14.15582 -14.01407 -13.30343 -13.21946 -13.15617 -13.09068 -12.90507 -12.59923 -12.47004 -11.94975 -11.86256 -11.71949 -11.31811 -11.15668 -10.94509 -10.27270 -10.21632 -10.16652 -9.30158 -8.66210 -8.34793 -6.12555 -0.17124 -0.07182 1.26045 1.41878 1.45884 1.57089 1.59940 1.78789 2.27134 2.27824 2.38383 2.75804 2.99728 3.17239 3.30732 3.37076 3.49148 3.63699 3.70294 3.77823 3.87768 3.91011 4.04038 4.23858 4.29814 4.33420 4.48295 4.53064 4.61244 4.65771 4.78456 4.91075 4.98018 4.99116 5.36386 5.42781 5.49356 6.14104 6.20335 6.46199 6.71977 7.07074 7.21823 8.74602 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.036018 B = 0.001453 C = 0.001407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.211125 B =19268.933467 C =19895.674794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.131 4.131 11 C 0.536 3.464 12 O -0.565 6.565 13 N -0.708 5.708 14 C 0.091 3.909 15 C 0.117 3.883 16 H 0.122 0.878 17 O -0.561 6.561 18 C 0.022 3.978 19 O -0.300 6.300 20 C 0.150 3.850 21 C -0.127 4.127 22 C -0.073 4.073 23 C 0.007 3.993 24 F -0.142 7.142 25 C 0.089 3.911 26 F -0.139 7.139 27 C -0.223 4.223 28 H 0.271 0.729 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.418 0.582 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.391 0.609 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.172 0.828 38 H 0.181 0.819 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.835 -30.052 -0.405 33.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.282 4.282 11 C 0.322 3.678 12 O -0.443 6.443 13 N -0.362 5.362 14 C -0.034 4.034 15 C 0.057 3.943 16 H 0.140 0.860 17 O -0.368 6.368 18 C -0.054 4.054 19 O -0.213 6.213 20 C 0.103 3.897 21 C -0.145 4.145 22 C -0.092 4.092 23 C -0.013 4.013 24 F -0.121 7.121 25 C 0.069 3.931 26 F -0.117 7.117 27 C -0.242 4.242 28 H 0.080 0.920 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.255 0.745 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.241 0.759 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.189 0.811 38 H 0.198 0.802 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 12.311 -30.129 -0.801 32.557 hybrid contribution 0.457 0.795 0.308 0.967 sum 12.768 -29.334 -0.493 31.996 Atomic orbital electron populations 1.70180 1.07956 1.28551 1.48088 1.26109 0.95948 1.03286 0.93735 0.84911 0.78629 0.76385 0.78055 1.18043 1.19960 1.19974 1.23249 0.95383 0.92057 1.58758 0.89904 1.85538 1.10542 0.99234 1.97054 1.23380 1.03562 0.94454 1.06847 1.19995 0.86143 0.86607 0.75084 1.90698 1.17317 1.86067 1.50232 1.45561 1.10468 1.04670 1.75517 1.21973 0.96651 0.80860 1.03869 1.21926 0.92889 0.89869 0.89616 0.85982 1.86639 1.41480 1.92721 1.15959 1.23682 0.88700 0.88519 1.04495 1.86163 1.35083 1.13007 1.87045 1.18897 0.92030 0.84360 0.94367 1.20701 1.00559 0.89988 1.03293 1.21193 0.93794 0.97058 0.97116 1.17888 0.94140 0.77704 1.11565 1.91497 1.94128 1.32340 1.94165 1.17636 0.77939 0.92982 1.04557 1.91517 1.34939 1.91328 1.93952 1.21262 0.97984 0.94561 1.10406 0.91995 0.87268 0.87191 0.74499 0.90176 0.90631 0.75905 0.88858 0.89189 0.81093 0.80172 0.81922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.42 13.22 21.65 0.29 -55.13 16 2 C 0.01 0.79 5.49 84.86 0.47 1.25 16 3 Si 1.00 43.10 29.55 68.60 2.03 45.13 16 4 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 5 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.55 -30.82 9.50 67.95 0.65 -30.17 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 9 S -0.15 -8.20 20.57 -56.49 -1.16 -9.37 16 10 C -0.13 -4.98 6.16 71.24 0.44 -4.54 16 11 C 0.54 18.29 7.85 87.66 0.69 18.98 16 12 O -0.56 -24.50 15.86 -3.02 -0.05 -24.55 16 13 N -0.71 -15.31 5.50 -463.07 -2.55 -17.86 16 14 C 0.09 1.43 5.31 86.38 0.46 1.89 16 15 C 0.12 1.19 3.28 30.59 0.10 1.29 16 16 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 17 O -0.56 -6.78 13.25 -144.34 -1.91 -8.69 16 18 C 0.02 0.17 4.37 71.98 0.31 0.49 16 19 O -0.30 -3.41 10.10 -88.36 -0.89 -4.30 16 20 C 0.15 1.67 6.68 22.49 0.15 1.82 16 21 C -0.13 -1.06 9.98 22.37 0.22 -0.83 16 22 C -0.07 -0.63 10.02 22.29 0.22 -0.41 16 23 C 0.01 0.11 7.30 22.41 0.16 0.27 16 24 F -0.14 -2.55 17.18 44.97 0.77 -1.77 16 25 C 0.09 1.42 7.30 22.40 0.16 1.58 16 26 F -0.14 -2.71 17.18 44.97 0.77 -1.94 16 27 C -0.22 -2.70 9.01 22.40 0.20 -2.50 16 28 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 29 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 30 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 31 H 0.42 6.95 8.47 -92.71 -0.79 6.16 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.39 2.56 9.05 -74.06 -0.67 1.89 16 35 H 0.09 0.55 7.65 -2.38 -0.02 0.53 16 36 H 0.09 0.48 7.67 -2.39 -0.02 0.46 16 37 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 38 H 0.18 0.51 8.06 -2.91 -0.02 0.48 16 39 H 0.16 1.46 6.30 -2.91 -0.02 1.44 16 Total: -1.00 -80.19 368.09 1.21 -78.99 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -0.33 Total: 10.38 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 4.24 Total: -10.89 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: -2.26 Total: -72.99 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -2.85 Total: -37.54 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 1.55 Total: -3.71 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.16 Total: -9.37 kcal Total: -80.19 1.21 -78.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152851554.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.137 kcal (2) G-P(sol) polarization free energy of solvation -80.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds