Wall clock time and date at job start Wed Apr 1 2020 04:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46495 * 109.47064 * 2 1 4 4 C 1.36938 * 119.99982 * 273.61831 * 3 2 1 5 5 H 1.07998 * 120.00266 * 137.79171 * 4 3 2 6 6 C 1.38815 * 119.99690 * 317.78686 * 4 3 2 7 7 N 1.31619 * 119.99737 * 157.81240 * 6 4 3 8 8 Si 1.86802 * 120.00215 * 337.81528 * 6 4 3 9 9 H 1.48504 * 109.47071 * 95.57587 * 8 6 4 10 10 H 1.48498 * 109.46869 * 215.57413 * 8 6 4 11 11 H 1.48493 * 109.47196 * 335.57614 * 8 6 4 12 12 S 1.65596 * 120.00240 * 93.62157 * 3 2 1 13 13 O 1.42103 * 106.40502 * 156.46207 * 12 3 2 14 14 O 1.42097 * 106.40664 * 23.53696 * 12 3 2 15 15 C 1.76210 * 107.21610 * 269.99748 * 12 3 2 16 16 C 1.38252 * 119.99998 * 89.99939 * 15 12 3 17 17 C 1.38210 * 120.00246 * 180.25626 * 16 15 12 18 18 C 1.38263 * 119.99575 * 359.53070 * 17 16 15 19 19 C 1.38212 * 120.00196 * 0.40551 * 18 17 16 20 20 S 1.76193 * 119.99894 * 179.82980 * 19 18 17 21 21 O 1.42098 * 104.28128 * 26.09211 * 20 19 18 22 22 O 1.42105 * 104.27427 * 153.94763 * 20 19 18 23 23 C 1.81400 * 104.44917 * 270.01839 * 20 19 18 24 24 C 1.53004 * 109.46808 * 180.02562 * 23 20 19 25 25 C 1.38213 * 120.00075 * 269.97705 * 15 12 3 26 26 H 1.09000 * 109.47012 * 303.93181 * 1 2 3 27 27 H 1.08990 * 109.46911 * 63.93299 * 1 2 3 28 28 H 1.09001 * 109.47083 * 183.93529 * 1 2 3 29 29 H 1.08994 * 109.47293 * 239.99622 * 2 1 3 30 30 H 1.09006 * 109.47363 * 120.00050 * 2 1 3 31 31 H 0.97001 * 119.99982 * 180.02562 * 7 6 4 32 32 H 1.08008 * 119.99633 * 359.97438 * 16 15 12 33 33 H 1.07996 * 120.00455 * 179.72582 * 17 16 15 34 34 H 1.08005 * 119.99676 * 180.23029 * 18 17 16 35 35 H 1.08996 * 109.47011 * 299.99823 * 23 20 19 36 36 H 1.08993 * 109.47062 * 60.00525 * 23 20 19 37 37 H 1.08995 * 109.47718 * 60.00208 * 24 23 20 38 38 H 1.09007 * 109.46724 * 180.02562 * 24 23 20 39 39 H 1.09000 * 109.47346 * 299.99473 * 24 23 20 40 40 H 1.08001 * 119.99905 * 359.97438 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1759 2.0517 -1.1836 5 1 1.8675 3.0834 -1.2650 6 6 2.7324 1.4051 -2.2787 7 7 2.5001 1.8520 -3.4947 8 14 3.8106 -0.0993 -2.0266 9 1 2.9905 -1.3277 -2.1812 10 1 4.9006 -0.1017 -3.0352 11 1 4.3979 -0.0646 -0.6632 12 16 2.3797 2.1317 1.4312 13 8 3.3031 3.1660 1.1200 14 8 2.6560 1.0990 2.3674 15 6 0.9098 2.9280 1.9882 16 6 0.0232 2.2502 2.8043 17 6 -1.1323 2.8730 3.2369 18 6 -1.3968 4.1771 2.8615 19 6 -0.5098 4.8552 2.0468 20 16 -0.8491 6.5156 1.5648 21 8 -1.6759 7.0204 2.6043 22 8 0.4321 7.0754 1.3106 23 6 -1.7912 6.3558 0.0229 24 6 -2.1493 7.7475 -0.5025 25 6 0.6435 4.2304 1.6098 26 1 -0.3633 0.5737 0.8527 27 1 -0.3633 0.4515 -0.9231 28 1 -0.3633 -1.0252 0.0705 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 2.8886 1.4000 -4.2600 32 1 0.2313 1.2325 3.0999 33 1 -1.8271 2.3421 3.8707 34 1 -2.2980 4.6651 3.2026 35 1 -1.1882 5.8320 -0.7187 36 1 -2.7048 5.7923 0.2121 37 1 -1.2356 8.3107 -0.6918 38 1 -2.7159 7.6514 -1.4288 39 1 -2.7523 8.2717 0.2390 40 1 1.3365 4.7601 0.9729 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155854440.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:21 Heat of formation + Delta-G solvation = -128.958585 kcal Electronic energy + Delta-G solvation = -27391.999337 eV Core-core repulsion = 23425.965280 eV Total energy + Delta-G solvation = -3966.034056 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.33053 -38.29087 -38.23463 -37.93393 -37.10512 -36.79284 -34.07313 -34.05941 -32.71080 -32.40916 -31.16438 -26.34646 -25.29111 -24.62087 -24.18202 -23.90171 -20.78055 -20.13902 -19.55054 -18.80289 -18.31959 -17.70688 -17.51156 -17.23605 -17.11011 -16.90984 -16.49367 -15.80928 -15.19396 -15.14351 -15.04909 -14.94629 -14.64904 -14.42162 -14.18791 -14.05214 -13.55729 -13.51878 -13.41284 -13.27058 -13.24680 -13.09335 -13.07502 -13.00354 -12.82370 -12.66212 -12.48778 -12.40145 -12.13803 -11.96566 -11.85516 -11.61404 -11.44885 -10.94685 -10.67139 -10.41101 -9.97714 -8.46392 -6.10925 -1.03116 -0.61597 -0.40979 -0.17790 1.21960 1.36421 1.44373 1.74047 1.96614 2.22911 2.36512 2.70917 2.81828 2.97596 3.03957 3.36599 3.65591 3.69611 3.78906 3.86143 3.90721 4.12096 4.24745 4.33247 4.39144 4.47261 4.55425 4.59740 4.70450 4.74974 4.80046 4.85584 4.89061 4.97622 5.05299 5.13095 5.32056 5.51596 5.58157 5.68190 6.19731 7.08155 7.09739 8.67196 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.014038 B = 0.004486 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.115212 B = 6240.406094 C = 7084.345494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.090 3.910 3 N -0.872 5.872 4 C -0.303 4.303 5 H 0.078 0.922 6 C 0.035 3.965 7 N -0.895 5.895 8 Si 0.909 3.091 9 H -0.242 1.242 10 H -0.286 1.286 11 H -0.273 1.273 12 S 2.643 3.357 13 O -1.000 7.000 14 O -0.999 6.999 15 C -0.686 4.686 16 C 0.017 3.983 17 C -0.145 4.145 18 C 0.023 3.977 19 C -0.686 4.686 20 S 2.495 3.505 21 O -0.954 6.954 22 O -0.979 6.979 23 C -0.584 4.584 24 C -0.163 4.163 25 C 0.051 3.949 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.278 0.722 32 H 0.163 0.837 33 H 0.190 0.810 34 H 0.185 0.815 35 H 0.145 0.855 36 H 0.172 0.828 37 H 0.069 0.931 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.107 1.672 8.338 18.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.035 4.035 3 N -0.705 5.705 4 C -0.437 4.437 5 H 0.096 0.904 6 C -0.171 4.171 7 N -0.534 5.534 8 Si 0.734 3.266 9 H -0.166 1.166 10 H -0.213 1.213 11 H -0.198 1.198 12 S 2.744 3.256 13 O -0.990 6.990 14 O -0.989 6.989 15 C -0.775 4.775 16 C -0.002 4.002 17 C -0.164 4.164 18 C 0.004 3.996 19 C -0.772 4.772 20 S 2.678 3.322 21 O -0.951 6.951 22 O -0.976 6.976 23 C -0.718 4.718 24 C -0.221 4.221 25 C 0.031 3.969 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.107 0.893 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.181 0.819 33 H 0.207 0.793 34 H 0.202 0.798 35 H 0.163 0.837 36 H 0.190 0.810 37 H 0.088 0.912 38 H 0.127 0.873 39 H 0.105 0.895 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.976 2.380 9.153 17.712 hybrid contribution 0.597 -1.014 -0.735 1.388 sum -14.379 1.366 8.417 16.717 Atomic orbital electron populations 1.22120 0.94012 1.03077 1.02453 1.21771 0.96693 0.82547 1.02462 1.52931 1.78124 1.21391 1.18040 1.18421 1.40211 0.98409 0.86664 0.90446 1.25914 0.96077 1.00548 0.94594 1.69883 1.42132 1.42775 0.98598 0.86379 0.80251 0.81617 0.78351 1.16639 1.21297 1.19773 1.03732 0.74654 0.73564 0.73699 1.93450 1.61184 1.59993 1.84367 1.93414 1.84323 1.57039 1.64130 1.30930 1.24299 1.07038 1.15277 1.21613 0.90985 0.99933 0.87628 1.21921 0.97593 0.95316 1.01546 1.21754 0.96600 0.93784 0.87415 1.30857 1.04630 1.26343 1.15412 1.05546 0.75127 0.73294 0.78260 1.93519 1.69687 1.77366 1.54518 1.93556 1.40946 1.76309 1.86815 1.30044 1.15779 1.08733 1.17226 1.21783 1.03980 0.91460 1.04905 1.20691 0.93529 0.91977 0.90729 0.91990 0.92839 0.89286 0.92004 0.89382 0.91169 0.81942 0.79325 0.79787 0.83678 0.80970 0.91233 0.87295 0.89505 0.84794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.70 10.22 71.98 0.74 -3.96 16 2 C 0.09 3.45 5.30 86.38 0.46 3.90 16 3 N -0.87 -39.67 2.37 -343.46 -0.81 -40.48 16 4 C -0.30 -15.92 9.27 84.03 0.78 -15.14 16 5 H 0.08 4.36 8.06 -2.91 -0.02 4.34 16 6 C 0.04 1.89 5.30 84.86 0.45 2.34 16 7 N -0.90 -49.74 13.97 21.65 0.30 -49.44 16 8 Si 0.91 41.80 25.26 68.60 1.73 43.53 16 9 H -0.24 -9.81 6.71 99.48 0.67 -9.14 16 10 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 12 S 2.64 117.78 5.65 -56.49 -0.32 117.46 16 13 O -1.00 -52.80 16.50 -128.00 -2.11 -54.91 16 14 O -1.00 -43.92 15.85 -128.00 -2.03 -45.94 16 15 C -0.69 -24.56 5.97 22.27 0.13 -24.43 16 16 C 0.02 0.47 8.24 22.27 0.18 0.65 16 17 C -0.14 -2.76 10.05 22.27 0.22 -2.53 16 18 C 0.02 0.46 9.47 22.27 0.21 0.68 16 19 C -0.69 -18.68 5.66 22.27 0.13 -18.56 16 20 S 2.49 61.23 5.16 -56.49 -0.29 60.94 16 21 O -0.95 -24.71 17.13 -127.65 -2.19 -26.90 16 22 O -0.98 -33.67 17.13 -127.65 -2.19 -35.85 16 23 C -0.58 -9.11 6.70 71.98 0.48 -8.63 16 24 C -0.16 -2.23 9.92 71.98 0.71 -1.51 16 25 C 0.05 1.81 8.95 22.27 0.20 2.01 16 26 H 0.06 1.62 6.80 -2.39 -0.02 1.60 16 27 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.06 2.47 3.73 -2.39 -0.01 2.46 16 30 H 0.09 3.06 6.94 -2.38 -0.02 3.04 16 31 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 32 H 0.16 3.67 7.62 -2.91 -0.02 3.65 16 33 H 0.19 1.75 8.06 -2.91 -0.02 1.72 16 34 H 0.18 2.27 7.57 -2.91 -0.02 2.25 16 35 H 0.15 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.17 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.09 0.94 8.14 -2.39 -0.02 0.93 16 40 H 0.13 5.29 7.13 -2.91 -0.02 5.27 16 Total: -1.00 -79.82 356.19 -2.19 -82.01 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 1.02 Total: 14.77 kcal Atomic # 6 Polarization: -69.88 SS G_CDS: 4.70 Total: -65.19 kcal Atomic # 7 Polarization: -89.41 SS G_CDS: -0.51 Total: -89.93 kcal Atomic # 8 Polarization: -155.09 SS G_CDS: -8.51 Total: -163.60 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 1.73 Total: 43.53 kcal Atomic # 16 Polarization: 179.02 SS G_CDS: -0.61 Total: 178.41 kcal Total: -79.82 -2.19 -82.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155854440.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.953 kcal (2) G-P(sol) polarization free energy of solvation -79.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds