Wall clock time and date at job start Wed Apr 1 2020 04:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 S 1.81395 * 109.47606 * 2 1 4 4 O 1.42109 * 110.54126 * 68.37149 * 3 2 1 5 5 O 1.42100 * 110.54077 * 291.62605 * 3 2 1 6 6 C 1.76193 * 104.45389 * 179.97438 * 3 2 1 7 7 C 1.38259 * 120.00162 * 270.02891 * 6 3 2 8 8 C 1.38204 * 120.00461 * 179.97438 * 7 6 3 9 9 C 1.38265 * 119.99943 * 359.80079 * 8 7 6 10 10 C 1.38213 * 119.99487 * 0.42720 * 9 8 7 11 11 S 1.76197 * 119.99884 * 179.81125 * 10 9 8 12 12 O 1.42100 * 106.40432 * 156.18616 * 11 10 9 13 13 O 1.42100 * 106.40250 * 23.26089 * 11 10 9 14 14 N 1.65606 * 107.21394 * 269.72437 * 11 10 9 15 15 C 1.46497 * 120.00213 * 64.99953 * 14 11 10 16 16 H 1.09003 * 109.46733 * 335.00276 * 15 14 11 17 17 C 1.53000 * 109.47145 * 94.99840 * 15 14 11 18 18 C 1.50694 * 109.47115 * 214.99914 * 15 14 11 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 15 14 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 14 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.38213 * 120.00162 * 89.99895 * 6 3 2 27 27 H 1.08996 * 109.47517 * 300.00262 * 1 2 3 28 28 H 1.09007 * 109.47266 * 60.00028 * 1 2 3 29 29 H 1.09005 * 109.47612 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47117 * 239.99564 * 2 1 3 31 31 H 1.09004 * 109.47027 * 120.00440 * 2 1 3 32 32 H 1.08006 * 119.99754 * 359.97438 * 7 6 3 33 33 H 1.08002 * 120.00532 * 180.02562 * 8 7 6 34 34 H 1.07991 * 120.00109 * 180.23440 * 9 8 7 35 35 H 0.97006 * 119.99827 * 244.99362 * 14 11 10 36 36 H 1.09007 * 109.47356 * 300.00099 * 17 15 14 37 37 H 1.09000 * 109.47156 * 59.99824 * 17 15 14 38 38 H 1.08997 * 109.47359 * 180.02562 * 17 15 14 39 39 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 40 40 H 1.07999 * 119.99661 * 359.97438 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3438 1.2370 5 8 1.8386 2.3437 -1.2370 6 6 3.8899 1.5559 0.0008 7 6 4.5780 1.4950 1.1984 8 6 5.9547 1.3735 1.1991 9 6 6.6436 1.3087 0.0020 10 6 5.9561 1.3743 -1.1952 11 16 6.8343 1.2968 -2.7208 12 8 5.9089 0.8312 -3.6934 13 8 8.0647 0.6425 -2.4427 14 7 7.2168 2.8511 -3.1456 15 6 8.1363 3.6324 -2.3149 16 1 8.1180 3.2500 -1.2943 17 6 9.5546 3.5174 -2.8771 18 6 7.7106 5.0780 -2.3175 19 1 6.8423 5.3843 -2.8819 20 6 8.4304 6.0099 -1.6001 21 7 9.4882 5.6371 -0.9132 22 14 7.9031 7.8019 -1.6039 23 1 8.5726 8.5125 -2.7229 24 1 6.4304 7.8842 -1.7758 25 1 8.2873 8.4336 -0.3160 26 6 4.5789 1.4952 -1.1959 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.0397 1.5423 2.1335 33 1 6.4922 1.3254 2.1346 34 1 7.7190 1.2099 0.0025 35 1 6.8321 3.2441 -3.9447 36 1 9.8626 2.4717 -2.8753 37 1 9.5730 3.8997 -3.8977 38 1 10.2389 4.0983 -2.2588 39 1 9.9947 6.2928 -0.4089 40 1 4.0413 1.5419 -2.1314 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157149000.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:51 Heat of formation + Delta-G solvation = -120.220020 kcal Electronic energy + Delta-G solvation = -26776.747486 eV Core-core repulsion = 22811.092363 eV Total energy + Delta-G solvation = -3965.655124 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.24921 -37.26627 -36.86250 -36.09735 -35.52049 -35.43563 -33.52985 -32.25961 -31.61076 -31.35511 -28.34890 -25.26543 -24.61988 -23.48695 -23.24561 -21.02149 -19.76699 -18.85007 -18.24585 -17.44722 -16.72886 -16.45937 -16.22086 -16.05495 -15.84153 -15.58625 -15.11430 -14.63326 -14.39117 -14.11592 -13.72370 -13.61672 -13.18221 -12.86818 -12.73110 -12.52214 -12.40538 -12.24267 -12.23239 -12.04396 -11.94247 -11.78990 -11.74483 -11.61103 -11.21456 -11.13823 -11.02087 -10.84183 -10.60609 -10.54269 -10.35278 -10.16371 -9.70234 -9.38060 -9.23269 -8.69392 -8.37618 -6.18853 -4.27049 -0.18479 0.53944 0.83363 0.98794 2.65098 3.06801 3.23073 3.30206 3.33924 3.58780 3.70335 3.87389 4.15242 4.24293 4.31895 4.37785 4.60264 4.74449 4.80590 4.81210 4.97624 5.13428 5.14781 5.28854 5.30704 5.45410 5.52798 5.64645 5.74297 5.94197 6.05641 6.22595 6.60007 6.75206 6.97549 7.01975 7.51377 7.64093 7.73430 7.97062 8.20456 8.76473 9.40100 10.86695 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.011825 B = 0.004093 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.314266 B = 6840.118510 C = 7974.613465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.611 4.611 3 S 2.496 3.504 4 O -0.935 6.935 5 O -0.929 6.929 6 C -0.687 4.687 7 C 0.021 3.979 8 C -0.157 4.157 9 C 0.042 3.958 10 C -0.686 4.686 11 S 2.687 3.313 12 O -0.977 6.977 13 O -0.958 6.958 14 N -1.097 6.097 15 C 0.274 3.726 16 H 0.039 0.961 17 C -0.158 4.158 18 C -0.528 4.528 19 H 0.066 0.934 20 C 0.066 3.934 21 N -0.887 5.887 22 Si 0.899 3.101 23 H -0.278 1.278 24 H -0.272 1.272 25 H -0.285 1.285 26 C 0.075 3.925 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.151 0.849 35 H 0.412 0.588 36 H 0.026 0.974 37 H 0.034 0.966 38 H 0.093 0.907 39 H 0.265 0.735 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.426 -12.399 4.709 18.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.741 4.741 3 S 2.676 3.324 4 O -0.932 6.932 5 O -0.926 6.926 6 C -0.774 4.774 7 C 0.002 3.998 8 C -0.176 4.176 9 C 0.023 3.977 10 C -0.771 4.771 11 S 2.774 3.226 12 O -0.967 6.967 13 O -0.948 6.948 14 N -0.859 5.859 15 C 0.170 3.830 16 H 0.057 0.943 17 C -0.218 4.218 18 C -0.567 4.567 19 H 0.084 0.916 20 C -0.137 4.137 21 N -0.525 5.525 22 Si 0.726 3.274 23 H -0.204 1.204 24 H -0.197 1.197 25 H -0.211 1.211 26 C 0.055 3.945 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.157 0.843 31 H 0.154 0.846 32 H 0.164 0.836 33 H 0.160 0.840 34 H 0.169 0.831 35 H 0.247 0.753 36 H 0.045 0.955 37 H 0.053 0.947 38 H 0.111 0.889 39 H 0.075 0.925 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -12.459 -12.402 4.574 18.165 hybrid contribution 0.058 0.934 0.448 1.038 sum -12.401 -11.467 5.022 17.622 Atomic orbital electron populations 1.21565 0.90178 1.05255 1.03815 1.30233 1.07189 1.24324 1.12322 1.05545 0.74206 0.77712 0.74978 1.93572 1.83272 1.71875 1.44503 1.93602 1.83111 1.71714 1.44213 1.30613 1.25889 1.21248 0.99622 1.21172 0.95108 0.87034 0.96513 1.21425 0.94352 1.02966 0.98874 1.21378 1.00902 0.84281 0.91121 1.31450 1.06272 1.17545 1.21831 1.02038 0.73642 0.73744 0.73131 1.93535 1.64930 1.80237 1.58041 1.93577 1.42462 1.73475 1.85309 1.55561 1.59861 1.33131 1.37304 1.18567 0.85218 0.90968 0.88279 0.94301 1.22245 0.99913 0.98926 1.00718 1.21308 1.12820 0.91708 1.30914 0.91605 1.24907 0.94713 0.99236 0.94875 1.69869 1.17345 1.34571 1.30705 0.86476 0.79136 0.84220 0.77534 1.20444 1.19717 1.21082 1.20673 0.92721 0.83543 0.97551 0.90761 0.90600 0.89703 0.84339 0.84593 0.83618 0.83983 0.83133 0.75339 0.95535 0.94730 0.88885 0.92527 0.82689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.92 37.16 0.37 -0.55 16 2 C -0.61 -4.14 6.70 37.16 0.25 -3.89 16 3 S 2.50 28.78 5.16 -107.50 -0.55 28.23 16 4 O -0.93 -12.80 17.13 -57.54 -0.99 -13.79 16 5 O -0.93 -13.85 17.13 -57.54 -0.99 -14.83 16 6 C -0.69 -9.24 5.66 -39.58 -0.22 -9.46 16 7 C 0.02 0.26 9.47 -39.59 -0.37 -0.12 16 8 C -0.16 -2.03 10.05 -39.58 -0.40 -2.43 16 9 C 0.04 0.65 8.92 -39.58 -0.35 0.30 16 10 C -0.69 -11.49 5.81 -39.58 -0.23 -11.72 16 11 S 2.69 49.17 5.65 -107.50 -0.61 48.56 16 12 O -0.98 -18.50 17.28 -57.17 -0.99 -19.49 16 13 O -0.96 -19.27 16.54 -57.17 -0.95 -20.21 16 14 N -1.10 -21.74 5.46 -5.88 -0.03 -21.77 16 15 C 0.27 6.40 2.76 -69.09 -0.19 6.21 16 16 H 0.04 0.94 7.25 -51.93 -0.38 0.56 16 17 C -0.16 -3.70 9.29 37.16 0.35 -3.36 16 18 C -0.53 -13.54 8.76 -34.44 -0.30 -13.84 16 19 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 20 C 0.07 1.72 5.30 -17.82 -0.09 1.62 16 21 N -0.89 -23.72 11.32 55.43 0.63 -23.09 16 22 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 26 C 0.08 1.16 8.95 -39.58 -0.35 0.81 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.14 0.75 8.14 -51.92 -0.42 0.33 16 31 H 0.14 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.15 1.36 7.57 -52.48 -0.40 0.96 16 33 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.15 2.23 7.61 -52.49 -0.40 1.83 16 35 H 0.41 7.44 8.83 -34.48 -0.30 7.13 16 36 H 0.03 0.58 7.64 -51.93 -0.40 0.18 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 39 H 0.26 6.76 8.31 -40.82 -0.34 6.43 16 40 H 0.16 2.22 7.13 -52.49 -0.37 1.84 16 LS Contribution 363.24 15.07 5.47 5.47 Total: -1.00 -35.02 363.24 -10.64 -45.66 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.07 Total: 6.19 kcal Atomic # 6 Polarization: -34.86 SS G_CDS: -1.56 Total: -36.42 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.60 Total: -44.87 kcal Atomic # 8 Polarization: -64.41 SS G_CDS: -3.90 Total: -68.32 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 77.95 SS G_CDS: -1.16 Total: 76.79 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.02 -10.64 -45.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157149000.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.559 kcal (2) G-P(sol) polarization free energy of solvation -35.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds