Wall clock time and date at job start Wed Apr 1 2020 04:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 S 1.81395 * 109.47606 * 2 1 4 4 O 1.42109 * 110.54126 * 68.37149 * 3 2 1 5 5 O 1.42100 * 110.54077 * 291.62605 * 3 2 1 6 6 C 1.76193 * 104.45389 * 179.97438 * 3 2 1 7 7 C 1.38259 * 120.00162 * 270.02891 * 6 3 2 8 8 C 1.38204 * 120.00461 * 179.97438 * 7 6 3 9 9 C 1.38265 * 119.99943 * 359.80079 * 8 7 6 10 10 C 1.38213 * 119.99487 * 0.42720 * 9 8 7 11 11 S 1.76197 * 119.99884 * 179.81125 * 10 9 8 12 12 O 1.42100 * 106.40432 * 156.18616 * 11 10 9 13 13 O 1.42100 * 106.40250 * 23.26089 * 11 10 9 14 14 N 1.65606 * 107.21394 * 269.72437 * 11 10 9 15 15 C 1.46497 * 120.00213 * 64.99953 * 14 11 10 16 16 H 1.09003 * 109.46733 * 335.00276 * 15 14 11 17 17 C 1.53000 * 109.47145 * 94.99840 * 15 14 11 18 18 C 1.50694 * 109.47115 * 214.99914 * 15 14 11 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 15 14 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 14 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.38213 * 120.00162 * 89.99895 * 6 3 2 27 27 H 1.08996 * 109.47517 * 300.00262 * 1 2 3 28 28 H 1.09007 * 109.47266 * 60.00028 * 1 2 3 29 29 H 1.09005 * 109.47612 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47117 * 239.99564 * 2 1 3 31 31 H 1.09004 * 109.47027 * 120.00440 * 2 1 3 32 32 H 1.08006 * 119.99754 * 359.97438 * 7 6 3 33 33 H 1.08002 * 120.00532 * 180.02562 * 8 7 6 34 34 H 1.07991 * 120.00109 * 180.23440 * 9 8 7 35 35 H 0.97006 * 119.99827 * 244.99362 * 14 11 10 36 36 H 1.09007 * 109.47356 * 300.00099 * 17 15 14 37 37 H 1.09000 * 109.47156 * 59.99824 * 17 15 14 38 38 H 1.08997 * 109.47359 * 180.02562 * 17 15 14 39 39 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 40 40 H 1.07999 * 119.99661 * 359.97438 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3438 1.2370 5 8 1.8386 2.3437 -1.2370 6 6 3.8899 1.5559 0.0008 7 6 4.5780 1.4950 1.1984 8 6 5.9547 1.3735 1.1991 9 6 6.6436 1.3087 0.0020 10 6 5.9561 1.3743 -1.1952 11 16 6.8343 1.2968 -2.7208 12 8 5.9089 0.8312 -3.6934 13 8 8.0647 0.6425 -2.4427 14 7 7.2168 2.8511 -3.1456 15 6 8.1363 3.6324 -2.3149 16 1 8.1180 3.2500 -1.2943 17 6 9.5546 3.5174 -2.8771 18 6 7.7106 5.0780 -2.3175 19 1 6.8423 5.3843 -2.8819 20 6 8.4304 6.0099 -1.6001 21 7 9.4882 5.6371 -0.9132 22 14 7.9031 7.8019 -1.6039 23 1 8.5726 8.5125 -2.7229 24 1 6.4304 7.8842 -1.7758 25 1 8.2873 8.4336 -0.3160 26 6 4.5789 1.4952 -1.1959 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.0397 1.5423 2.1335 33 1 6.4922 1.3254 2.1346 34 1 7.7190 1.2099 0.0025 35 1 6.8321 3.2441 -3.9447 36 1 9.8626 2.4717 -2.8753 37 1 9.5730 3.8997 -3.8977 38 1 10.2389 4.0983 -2.2588 39 1 9.9947 6.2928 -0.4089 40 1 4.0413 1.5419 -2.1314 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157149000.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:50 Heat of formation + Delta-G solvation = -147.632013 kcal Electronic energy + Delta-G solvation = -26777.936160 eV Core-core repulsion = 22811.092363 eV Total energy + Delta-G solvation = -3966.843797 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.33648 -38.41033 -38.23975 -37.29663 -37.07823 -36.98685 -34.16006 -34.05262 -32.71174 -32.44337 -30.16917 -27.25216 -25.29963 -24.59517 -24.21408 -22.86560 -20.97281 -20.03892 -19.44505 -19.06800 -17.98552 -17.61412 -17.46897 -17.18414 -17.07312 -16.94388 -16.54778 -15.98018 -15.37220 -15.16138 -15.11087 -14.58482 -14.46733 -14.11257 -14.06347 -13.61764 -13.54184 -13.51015 -13.39901 -13.32448 -13.24709 -13.14148 -13.08126 -13.03859 -12.85043 -12.41660 -12.38534 -12.27008 -12.20168 -12.04277 -11.89491 -11.47329 -11.13059 -10.83269 -10.60737 -10.43862 -10.15688 -8.17073 -6.30769 -1.02379 -0.67217 -0.46466 -0.19370 1.42151 1.44561 1.53225 1.74245 1.91285 2.18176 2.42969 2.68555 2.86850 3.03534 3.12777 3.30580 3.61756 3.70438 3.77901 3.84389 3.89045 4.22250 4.31483 4.40841 4.45464 4.59461 4.66543 4.75351 4.83149 4.84859 4.89712 4.99542 5.08038 5.14077 5.15062 5.55019 5.56872 5.72301 5.99870 6.05142 6.36525 6.79137 7.38923 8.87931 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.011825 B = 0.004093 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.314266 B = 6840.118510 C = 7974.613465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.578 4.578 3 S 2.492 3.508 4 O -0.962 6.962 5 O -0.973 6.973 6 C -0.688 4.688 7 C 0.024 3.976 8 C -0.153 4.153 9 C 0.018 3.982 10 C -0.701 4.701 11 S 2.703 3.297 12 O -0.985 6.985 13 O -0.980 6.980 14 N -1.101 6.101 15 C 0.277 3.723 16 H 0.030 0.970 17 C -0.152 4.152 18 C -0.544 4.544 19 H 0.064 0.936 20 C 0.024 3.976 21 N -0.909 5.909 22 Si 0.954 3.046 23 H -0.274 1.274 24 H -0.273 1.273 25 H -0.282 1.282 26 C 0.055 3.945 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.159 0.841 31 H 0.170 0.830 32 H 0.181 0.819 33 H 0.176 0.824 34 H 0.148 0.852 35 H 0.418 0.582 36 H 0.032 0.968 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.266 0.734 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.159 -13.433 6.118 20.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.712 4.712 3 S 2.674 3.326 4 O -0.959 6.959 5 O -0.971 6.971 6 C -0.773 4.773 7 C 0.005 3.995 8 C -0.173 4.173 9 C -0.001 4.001 10 C -0.789 4.789 11 S 2.793 3.207 12 O -0.976 6.976 13 O -0.971 6.971 14 N -0.862 5.862 15 C 0.172 3.828 16 H 0.047 0.953 17 C -0.212 4.212 18 C -0.583 4.583 19 H 0.083 0.917 20 C -0.177 4.177 21 N -0.548 5.548 22 Si 0.780 3.220 23 H -0.199 1.199 24 H -0.198 1.198 25 H -0.208 1.208 26 C 0.035 3.965 27 H 0.098 0.902 28 H 0.091 0.909 29 H 0.131 0.869 30 H 0.177 0.823 31 H 0.188 0.812 32 H 0.198 0.802 33 H 0.194 0.806 34 H 0.166 0.834 35 H 0.253 0.747 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -14.136 -13.391 5.932 20.355 hybrid contribution 0.465 1.136 0.081 1.230 sum -13.671 -12.255 6.013 19.319 Atomic orbital electron populations 1.21799 0.89300 1.07052 1.04151 1.30024 1.07624 1.18409 1.15138 1.05739 0.73154 0.80137 0.73550 1.93530 1.82996 1.74458 1.44898 1.93545 1.83150 1.74748 1.45639 1.30968 1.27240 1.19903 0.99237 1.21688 0.95093 0.85189 0.97521 1.21849 0.94890 1.01345 0.99172 1.21557 1.01133 0.85603 0.91854 1.31051 1.06809 1.20040 1.20995 1.01326 0.73151 0.72779 0.73406 1.93515 1.64890 1.80075 1.59106 1.93538 1.43945 1.73764 1.85815 1.55428 1.59906 1.33329 1.37549 1.18321 0.85712 0.90474 0.88336 0.95268 1.22148 0.99698 0.98951 1.00416 1.21608 1.12820 0.93001 1.30864 0.91748 1.25581 0.94819 1.02605 0.94717 1.69967 1.18022 1.35593 1.31190 0.85610 0.78553 0.80208 0.77604 1.19913 1.19818 1.20770 1.20824 0.92367 0.84549 0.98787 0.90208 0.90879 0.86941 0.82346 0.81172 0.80160 0.80649 0.83411 0.74676 0.94862 0.94384 0.90800 0.92431 0.82519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.92 71.98 0.71 -0.70 16 2 C -0.58 -5.62 6.70 71.98 0.48 -5.14 16 3 S 2.49 53.61 5.16 -56.49 -0.29 53.32 16 4 O -0.96 -24.78 17.13 -127.65 -2.19 -26.96 16 5 O -0.97 -28.97 17.13 -127.65 -2.19 -31.16 16 6 C -0.69 -17.55 5.66 22.27 0.13 -17.42 16 7 C 0.02 0.53 9.47 22.27 0.21 0.74 16 8 C -0.15 -3.67 10.05 22.27 0.22 -3.45 16 9 C 0.02 0.55 8.92 22.27 0.20 0.74 16 10 C -0.70 -23.61 5.81 22.27 0.13 -23.48 16 11 S 2.70 100.78 5.65 -56.49 -0.32 100.46 16 12 O -0.99 -37.72 17.28 -128.00 -2.21 -39.94 16 13 O -0.98 -40.24 16.54 -128.00 -2.12 -42.36 16 14 N -1.10 -44.59 5.46 -172.53 -0.94 -45.53 16 15 C 0.28 13.19 2.76 44.24 0.12 13.32 16 16 H 0.03 1.46 7.25 -2.39 -0.02 1.44 16 17 C -0.15 -7.26 9.29 71.98 0.67 -6.59 16 18 C -0.54 -28.16 8.76 25.60 0.22 -27.93 16 19 H 0.06 3.27 7.81 -2.91 -0.02 3.25 16 20 C 0.02 1.23 5.30 84.66 0.45 1.68 16 21 N -0.91 -49.00 11.32 21.45 0.24 -48.76 16 22 Si 0.95 42.01 29.54 68.60 2.03 44.03 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 25 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 26 C 0.05 1.69 8.95 22.27 0.20 1.88 16 27 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.16 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.17 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.18 2.69 7.57 -2.91 -0.02 2.67 16 33 H 0.18 2.90 8.06 -2.91 -0.02 2.87 16 34 H 0.15 4.48 7.61 -2.92 -0.02 4.45 16 35 H 0.42 15.45 8.83 -96.74 -0.85 14.59 16 36 H 0.03 1.48 7.64 -2.38 -0.02 1.46 16 37 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.07 3.80 6.07 -2.39 -0.01 3.79 16 39 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 40 H 0.16 4.58 7.13 -2.91 -0.02 4.56 16 Total: -1.00 -76.01 363.24 -4.02 -80.03 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.22 Total: 23.21 kcal Atomic # 6 Polarization: -70.10 SS G_CDS: 3.75 Total: -66.36 kcal Atomic # 7 Polarization: -93.59 SS G_CDS: -0.70 Total: -94.29 kcal Atomic # 8 Polarization: -131.71 SS G_CDS: -8.70 Total: -140.41 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 16 Polarization: 154.39 SS G_CDS: -0.61 Total: 153.78 kcal Total: -76.01 -4.02 -80.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157149000.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.602 kcal (2) G-P(sol) polarization free energy of solvation -76.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds