Wall clock time and date at job start Wed Apr 1 2020 04:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 S 1.81403 * 109.47088 * 2 1 4 4 O 1.42099 * 110.54217 * 68.37656 * 3 2 1 5 5 O 1.42097 * 110.54258 * 291.62735 * 3 2 1 6 6 C 1.76199 * 104.44785 * 180.02562 * 3 2 1 7 7 C 1.38260 * 119.99860 * 90.00218 * 6 3 2 8 8 C 1.38214 * 119.99662 * 179.97438 * 7 6 3 9 9 C 1.38256 * 120.00160 * 359.97438 * 8 7 6 10 10 C 1.38211 * 120.00062 * 0.26318 * 9 8 7 11 11 S 1.76195 * 120.00141 * 179.72267 * 10 9 8 12 12 O 1.42101 * 106.40262 * 203.53854 * 11 10 9 13 13 O 1.42095 * 106.40258 * 336.45281 * 11 10 9 14 14 N 1.65595 * 107.22212 * 89.99412 * 11 10 9 15 15 C 1.46500 * 120.00061 * 65.00033 * 14 11 10 16 16 H 1.09005 * 109.47336 * 25.00158 * 15 14 11 17 17 C 1.53004 * 109.47339 * 265.00182 * 15 14 11 18 18 C 1.50698 * 109.47410 * 145.00218 * 15 14 11 19 19 H 1.08001 * 119.99580 * 359.97438 * 18 15 14 20 20 C 1.37872 * 120.00362 * 180.02562 * 18 15 14 21 21 N 1.31515 * 119.99863 * 359.97438 * 20 18 15 22 22 Si 1.86795 * 120.00354 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.47404 * 89.99503 * 22 20 18 24 24 H 1.48496 * 109.47520 * 209.99644 * 22 20 18 25 25 H 1.48503 * 109.47139 * 329.99928 * 22 20 18 26 26 C 1.38212 * 120.00083 * 269.97720 * 6 3 2 27 27 H 1.08996 * 109.46979 * 59.99688 * 1 2 3 28 28 H 1.08995 * 109.47143 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46780 * 300.00261 * 1 2 3 30 30 H 1.09000 * 109.46910 * 240.00217 * 2 1 3 31 31 H 1.08992 * 109.47106 * 119.99829 * 2 1 3 32 32 H 1.07997 * 119.99889 * 359.97438 * 7 6 3 33 33 H 1.07999 * 119.99762 * 179.97438 * 8 7 6 34 34 H 1.08002 * 119.99676 * 179.97438 * 9 8 7 35 35 H 0.96997 * 120.00336 * 245.00414 * 14 11 10 36 36 H 1.09004 * 109.46961 * 59.99499 * 17 15 14 37 37 H 1.08992 * 109.47079 * 179.97438 * 17 15 14 38 38 H 1.09005 * 109.46887 * 300.00251 * 17 15 14 39 39 H 0.97008 * 120.00080 * 180.02562 * 21 20 18 40 40 H 1.07999 * 119.99957 * 359.97438 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8386 2.3438 1.2370 5 8 1.8386 2.3439 -1.2369 6 6 3.8899 1.5560 -0.0008 7 6 4.5781 1.4957 -1.1984 8 6 5.9549 1.3752 -1.1990 9 6 6.6442 1.3156 -0.0020 10 6 5.9558 1.3709 1.1953 11 16 6.8335 1.2875 2.7208 12 8 5.9077 0.8181 3.6913 13 8 8.0638 0.6341 2.4407 14 7 7.2161 2.8399 3.1518 15 6 6.1522 3.7937 3.4751 16 1 5.2680 3.2518 3.8109 17 6 5.8059 4.6129 2.2301 18 6 6.6210 4.7173 4.5697 19 1 7.6122 4.6048 4.9835 20 6 5.7842 5.7053 5.0436 21 7 4.5770 5.8420 4.5401 22 14 6.3651 6.8497 6.4008 23 1 7.0205 8.0388 5.7991 24 1 5.2010 7.2846 7.2138 25 1 7.3358 6.1357 7.2687 26 6 4.5789 1.4958 1.1959 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 4.0397 1.5428 -2.1335 33 1 6.4924 1.3277 -2.1345 34 1 7.7200 1.2210 -0.0025 35 1 8.1446 3.1178 3.1903 36 1 5.4668 3.9448 1.4383 37 1 5.0141 5.3222 2.4705 38 1 6.6901 5.1548 1.8943 39 1 3.9883 6.5374 4.8732 40 1 4.0415 1.5437 2.1314 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157149149.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:53 Heat of formation + Delta-G solvation = -117.248807 kcal Electronic energy + Delta-G solvation = -27071.638198 eV Core-core repulsion = 23106.111916 eV Total energy + Delta-G solvation = -3965.526282 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.31693 -37.16966 -36.84573 -35.99034 -35.49352 -35.43279 -33.44771 -32.20390 -31.65520 -31.40200 -28.34189 -25.24414 -24.56196 -23.50944 -23.25116 -20.98476 -19.77086 -18.74985 -18.22452 -17.48127 -16.68401 -16.38203 -16.30436 -15.98315 -15.78315 -15.55670 -15.05890 -14.57270 -14.33126 -14.14584 -13.68010 -13.61903 -13.23697 -12.78852 -12.70959 -12.51680 -12.42376 -12.22801 -12.11965 -11.96394 -11.85880 -11.79983 -11.68886 -11.58600 -11.20930 -11.10573 -10.98109 -10.78581 -10.66477 -10.48155 -10.35466 -10.10109 -9.75132 -9.40999 -9.20218 -8.65691 -8.31911 -6.09589 -4.18416 -0.11362 0.48427 0.81791 0.96202 2.71512 3.02737 3.28137 3.35295 3.38190 3.61947 3.77127 3.94567 4.15143 4.32083 4.36947 4.39181 4.61506 4.71474 4.83756 4.85131 4.88667 5.19498 5.22156 5.30734 5.36597 5.40016 5.60238 5.61553 5.73740 5.89127 5.94588 6.28045 6.53546 6.73985 6.79560 6.98478 7.54113 7.65766 7.82031 8.00843 8.25021 8.83613 9.47571 10.96218 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.011367 B = 0.004347 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.590569 B = 6439.679618 C = 7828.079027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.612 4.612 3 S 2.492 3.508 4 O -0.916 6.916 5 O -0.936 6.936 6 C -0.683 4.683 7 C 0.021 3.979 8 C -0.162 4.162 9 C 0.033 3.967 10 C -0.687 4.687 11 S 2.686 3.314 12 O -0.955 6.955 13 O -0.979 6.979 14 N -1.095 6.095 15 C 0.265 3.735 16 H 0.054 0.946 17 C -0.161 4.161 18 C -0.524 4.524 19 H 0.065 0.935 20 C 0.065 3.935 21 N -0.883 5.883 22 Si 0.902 3.098 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.273 1.273 26 C 0.083 3.917 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.134 0.866 31 H 0.139 0.861 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.146 0.854 35 H 0.411 0.589 36 H 0.010 0.990 37 H 0.097 0.903 38 H 0.035 0.965 39 H 0.266 0.734 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.568 -11.976 -13.400 18.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.742 4.742 3 S 2.671 3.329 4 O -0.913 6.913 5 O -0.934 6.934 6 C -0.770 4.770 7 C 0.002 3.998 8 C -0.182 4.182 9 C 0.014 3.986 10 C -0.772 4.772 11 S 2.773 3.227 12 O -0.945 6.945 13 O -0.969 6.969 14 N -0.857 5.857 15 C 0.161 3.839 16 H 0.072 0.928 17 C -0.221 4.221 18 C -0.564 4.564 19 H 0.083 0.917 20 C -0.139 4.139 21 N -0.521 5.521 22 Si 0.730 3.270 23 H -0.207 1.207 24 H -0.210 1.210 25 H -0.198 1.198 26 C 0.063 3.937 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.152 0.848 31 H 0.157 0.843 32 H 0.163 0.837 33 H 0.158 0.842 34 H 0.164 0.836 35 H 0.245 0.755 36 H 0.030 0.970 37 H 0.115 0.885 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.215 -11.924 -12.948 18.100 hybrid contribution 1.040 0.521 -0.042 1.164 sum -3.175 -11.403 -12.990 17.574 Atomic orbital electron populations 1.21564 0.90144 1.05209 1.03893 1.30244 1.07271 1.24444 1.12192 1.05745 0.74238 0.77749 0.75184 1.93670 1.82724 1.71241 1.43711 1.93560 1.83230 1.71841 1.44731 1.30726 1.26316 1.20463 0.99477 1.21175 0.95043 0.87009 0.96561 1.21370 0.94443 1.03775 0.98610 1.21239 1.00507 0.85752 0.91143 1.31530 1.06460 1.17410 1.21776 1.02065 0.73321 0.73631 0.73664 1.93589 1.65048 1.79457 1.56420 1.93526 1.43409 1.74066 1.85862 1.55528 1.16982 1.30171 1.83028 1.18707 0.84836 0.86913 0.93415 0.92838 1.22339 1.02236 1.01168 0.96323 1.21156 1.01292 1.14892 1.19042 0.91670 1.24927 0.94790 0.97293 0.96870 1.69873 1.07010 1.33285 1.41931 0.86437 0.78300 0.80670 0.81622 1.20651 1.21048 1.19796 1.20809 0.92792 0.82172 0.97908 0.90815 0.89747 0.90451 0.84771 0.84306 0.83651 0.84234 0.83585 0.75488 0.97050 0.88452 0.94624 0.92415 0.82261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.92 37.16 0.37 -0.69 16 2 C -0.61 -4.68 6.70 37.16 0.25 -4.43 16 3 S 2.49 31.17 5.16 -107.50 -0.55 30.61 16 4 O -0.92 -15.52 17.13 -57.54 -0.99 -16.51 16 5 O -0.94 -13.28 17.12 -57.54 -0.99 -14.26 16 6 C -0.68 -9.30 5.66 -39.58 -0.22 -9.53 16 7 C 0.02 0.24 9.47 -39.58 -0.37 -0.13 16 8 C -0.16 -1.80 10.05 -39.58 -0.40 -2.19 16 9 C 0.03 0.43 9.52 -39.58 -0.38 0.05 16 10 C -0.69 -11.03 5.07 -39.58 -0.20 -11.23 16 11 S 2.69 49.33 5.72 -107.50 -0.61 48.71 16 12 O -0.96 -20.31 16.63 -57.18 -0.95 -21.26 16 13 O -0.98 -18.17 17.28 -57.18 -0.99 -19.16 16 14 N -1.10 -21.72 5.46 -5.88 -0.03 -21.76 16 15 C 0.27 6.39 2.89 -69.08 -0.20 6.19 16 16 H 0.05 1.41 7.50 -51.93 -0.39 1.02 16 17 C -0.16 -3.73 9.29 37.16 0.35 -3.39 16 18 C -0.52 -13.81 8.76 -34.44 -0.30 -14.11 16 19 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 20 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 21 N -0.88 -24.66 11.32 55.43 0.63 -24.04 16 22 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 C 0.08 1.34 7.99 -39.58 -0.32 1.03 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.13 0.67 8.14 -51.92 -0.42 0.25 16 31 H 0.14 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.15 1.25 7.57 -52.49 -0.40 0.85 16 33 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 34 H 0.15 1.63 7.62 -52.49 -0.40 1.23 16 35 H 0.41 7.28 8.83 -34.47 -0.30 6.97 16 36 H 0.01 0.22 6.15 -51.93 -0.32 -0.10 16 37 H 0.10 2.52 6.07 -51.93 -0.32 2.20 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.16 2.67 7.14 -52.49 -0.37 2.29 16 LS Contribution 361.21 15.07 5.44 5.44 Total: -1.00 -36.26 361.21 -10.59 -46.85 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.00 Total: 6.37 kcal Atomic # 6 Polarization: -35.27 SS G_CDS: -1.52 Total: -36.79 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.60 Total: -45.79 kcal Atomic # 8 Polarization: -67.28 SS G_CDS: -3.91 Total: -71.19 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 80.49 SS G_CDS: -1.17 Total: 79.33 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.26 -10.59 -46.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157149149.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.396 kcal (2) G-P(sol) polarization free energy of solvation -36.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds