Wall clock time and date at job start Wed Apr 1 2020 04:07:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 S 1.81403 * 109.47088 * 2 1
4 4 O 1.42099 * 110.54217 * 68.37656 * 3 2 1
5 5 O 1.42097 * 110.54258 * 291.62735 * 3 2 1
6 6 C 1.76199 * 104.44785 * 180.02562 * 3 2 1
7 7 C 1.38260 * 119.99860 * 90.00218 * 6 3 2
8 8 C 1.38214 * 119.99662 * 179.97438 * 7 6 3
9 9 C 1.38256 * 120.00160 * 359.97438 * 8 7 6
10 10 C 1.38211 * 120.00062 * 0.26318 * 9 8 7
11 11 S 1.76195 * 120.00141 * 179.72267 * 10 9 8
12 12 O 1.42101 * 106.40262 * 203.53854 * 11 10 9
13 13 O 1.42095 * 106.40258 * 336.45281 * 11 10 9
14 14 N 1.65595 * 107.22212 * 89.99412 * 11 10 9
15 15 C 1.46500 * 120.00061 * 65.00033 * 14 11 10
16 16 H 1.09005 * 109.47336 * 25.00158 * 15 14 11
17 17 C 1.53004 * 109.47339 * 265.00182 * 15 14 11
18 18 C 1.50698 * 109.47410 * 145.00218 * 15 14 11
19 19 H 1.08001 * 119.99580 * 359.97438 * 18 15 14
20 20 C 1.37872 * 120.00362 * 180.02562 * 18 15 14
21 21 N 1.31515 * 119.99863 * 359.97438 * 20 18 15
22 22 Si 1.86795 * 120.00354 * 179.97438 * 20 18 15
23 23 H 1.48506 * 109.47404 * 89.99503 * 22 20 18
24 24 H 1.48496 * 109.47520 * 209.99644 * 22 20 18
25 25 H 1.48503 * 109.47139 * 329.99928 * 22 20 18
26 26 C 1.38212 * 120.00083 * 269.97720 * 6 3 2
27 27 H 1.08996 * 109.46979 * 59.99688 * 1 2 3
28 28 H 1.08995 * 109.47143 * 180.02562 * 1 2 3
29 29 H 1.09004 * 109.46780 * 300.00261 * 1 2 3
30 30 H 1.09000 * 109.46910 * 240.00217 * 2 1 3
31 31 H 1.08992 * 109.47106 * 119.99829 * 2 1 3
32 32 H 1.07997 * 119.99889 * 359.97438 * 7 6 3
33 33 H 1.07999 * 119.99762 * 179.97438 * 8 7 6
34 34 H 1.08002 * 119.99676 * 179.97438 * 9 8 7
35 35 H 0.96997 * 120.00336 * 245.00414 * 14 11 10
36 36 H 1.09004 * 109.46961 * 59.99499 * 17 15 14
37 37 H 1.08992 * 109.47079 * 179.97438 * 17 15 14
38 38 H 1.09005 * 109.46887 * 300.00251 * 17 15 14
39 39 H 0.97008 * 120.00080 * 180.02562 * 21 20 18
40 40 H 1.07999 * 119.99957 * 359.97438 * 26 6 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 16 2.1347 1.7103 0.0000
4 8 1.8386 2.3438 1.2370
5 8 1.8386 2.3439 -1.2369
6 6 3.8899 1.5560 -0.0008
7 6 4.5781 1.4957 -1.1984
8 6 5.9549 1.3752 -1.1990
9 6 6.6442 1.3156 -0.0020
10 6 5.9558 1.3709 1.1953
11 16 6.8335 1.2875 2.7208
12 8 5.9077 0.8181 3.6913
13 8 8.0638 0.6341 2.4407
14 7 7.2161 2.8399 3.1518
15 6 6.1522 3.7937 3.4751
16 1 5.2680 3.2518 3.8109
17 6 5.8059 4.6129 2.2301
18 6 6.6210 4.7173 4.5697
19 1 7.6122 4.6048 4.9835
20 6 5.7842 5.7053 5.0436
21 7 4.5770 5.8420 4.5401
22 14 6.3651 6.8497 6.4008
23 1 7.0205 8.0388 5.7991
24 1 5.2010 7.2846 7.2138
25 1 7.3358 6.1357 7.2687
26 6 4.5789 1.4958 1.1959
27 1 -0.3633 0.5139 -0.8899
28 1 -0.3633 -1.0276 0.0005
29 1 -0.3633 0.5139 0.8900
30 1 1.8933 -0.5138 -0.8900
31 1 1.8934 -0.5138 0.8899
32 1 4.0397 1.5428 -2.1335
33 1 6.4924 1.3277 -2.1345
34 1 7.7200 1.2210 -0.0025
35 1 8.1446 3.1178 3.1903
36 1 5.4668 3.9448 1.4383
37 1 5.0141 5.3222 2.4705
38 1 6.6901 5.1548 1.8943
39 1 3.9883 6.5374 4.8732
40 1 4.0415 1.5437 2.1314
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000157149149.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:07:53
Heat of formation + Delta-G solvation = -146.711865 kcal
Electronic energy + Delta-G solvation = -27072.915812 eV
Core-core repulsion = 23106.111916 eV
Total energy + Delta-G solvation = -3966.803896 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 347.074 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-40.35191 -38.40949 -38.22928 -37.31827 -37.06663 -36.99901 -34.16246 -34.06752
-32.70527 -32.43570 -30.18681 -27.27786 -25.30576 -24.57578 -24.19356 -22.88172
-20.99766 -19.98365 -19.44269 -19.15403 -17.93766 -17.63163 -17.44569 -17.24188
-16.99119 -16.93719 -16.53849 -15.94801 -15.37818 -15.17631 -15.09540 -14.60289
-14.52016 -14.10299 -14.05995 -13.67706 -13.54174 -13.48459 -13.41829 -13.27432
-13.23198 -13.14891 -13.06523 -13.04444 -12.82769 -12.48270 -12.40701 -12.27988
-12.15520 -12.01937 -11.85748 -11.45645 -11.17779 -10.81715 -10.61915 -10.40895
-10.14127 -8.14299 -6.30429 -1.02060 -0.67470 -0.46615 -0.18738 1.44591
1.46077 1.56378 1.75659 1.93072 2.20857 2.44202 2.69018 2.87746
3.03159 3.14953 3.31663 3.63906 3.68841 3.79793 3.86492 3.89848
4.23716 4.31783 4.38816 4.47125 4.59553 4.69739 4.74196 4.82205
4.83016 4.88037 4.93907 4.98801 5.07623 5.12822 5.54878 5.58006
5.70476 6.00511 6.07327 6.37639 6.80161 7.39573 8.90904
Molecular weight = 347.07amu
Principal moments of inertia in cm(-1)
A = 0.011367 B = 0.004347 C = 0.003576
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2462.590569 B = 6439.679618 C = 7828.079027
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C -0.578 4.578
3 S 2.482 3.518
4 O -0.978 6.978
5 O -0.959 6.959
6 C -0.686 4.686
7 C 0.025 3.975
8 C -0.147 4.147
9 C 0.024 3.976
10 C -0.698 4.698
11 S 2.700 3.300
12 O -0.994 6.994
13 O -0.980 6.980
14 N -1.098 6.098
15 C 0.271 3.729
16 H 0.021 0.979
17 C -0.150 4.150
18 C -0.543 4.543
19 H 0.070 0.930
20 C 0.015 3.985
21 N -0.914 5.914
22 Si 0.966 3.034
23 H -0.271 1.271
24 H -0.285 1.285
25 H -0.267 1.267
26 C 0.054 3.946
27 H 0.081 0.919
28 H 0.114 0.886
29 H 0.067 0.933
30 H 0.175 0.825
31 H 0.154 0.846
32 H 0.181 0.819
33 H 0.187 0.813
34 H 0.167 0.833
35 H 0.420 0.580
36 H 0.029 0.971
37 H 0.067 0.933
38 H 0.045 0.955
39 H 0.266 0.734
40 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.802 -13.306 -16.009 21.005
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C -0.712 4.712
3 S 2.665 3.335
4 O -0.976 6.976
5 O -0.956 6.956
6 C -0.772 4.772
7 C 0.006 3.994
8 C -0.166 4.166
9 C 0.005 3.995
10 C -0.787 4.787
11 S 2.791 3.209
12 O -0.984 6.984
13 O -0.970 6.970
14 N -0.859 5.859
15 C 0.166 3.834
16 H 0.038 0.962
17 C -0.210 4.210
18 C -0.582 4.582
19 H 0.088 0.912
20 C -0.185 4.185
21 N -0.553 5.553
22 Si 0.791 3.209
23 H -0.197 1.197
24 H -0.211 1.211
25 H -0.192 1.192
26 C 0.034 3.966
27 H 0.100 0.900
28 H 0.132 0.868
29 H 0.086 0.914
30 H 0.193 0.807
31 H 0.172 0.828
32 H 0.199 0.801
33 H 0.204 0.796
34 H 0.185 0.815
35 H 0.255 0.745
36 H 0.048 0.952
37 H 0.086 0.914
38 H 0.064 0.936
39 H 0.075 0.925
40 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges -3.375 -13.210 -15.513 20.653
hybrid contribution 0.730 0.781 0.618 1.235
sum -2.645 -12.430 -14.895 19.579
Atomic orbital electron populations
1.21797 0.89395 1.07068 1.04048 1.30025 1.07642 1.18526 1.15034
1.05919 0.73783 0.80204 0.73562 1.93602 1.83348 1.74735 1.45870
1.93517 1.83170 1.74323 1.44636 1.30830 1.26871 1.20127 0.99398
1.21731 0.95689 0.85069 0.96894 1.21911 0.94301 1.00966 0.99459
1.21623 1.01685 0.85377 0.90793 1.30971 1.06231 1.20361 1.21170
1.01310 0.72896 0.72664 0.73998 1.93535 1.65903 1.79936 1.59065
1.93513 1.43676 1.73670 1.86135 1.55306 1.16640 1.29957 1.83974
1.18336 0.84737 0.86948 0.93403 0.96164 1.22153 1.01563 1.00746
0.96512 1.21566 1.01556 1.15334 1.19770 0.91222 1.25755 0.94843
0.98884 0.99060 1.70026 1.08092 1.33944 1.43223 0.85440 0.77781
0.78839 0.78851 1.19666 1.21109 1.19190 1.20710 0.93112 0.84518
0.98295 0.89984 0.86782 0.91369 0.80736 0.82796 0.80150 0.79573
0.81523 0.74471 0.95188 0.91419 0.93637 0.92513 0.84670
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.92 9.92 71.98 0.71 -1.21 16
2 C -0.58 -7.29 6.70 71.98 0.48 -6.80 16
3 S 2.48 61.68 5.16 -56.49 -0.29 61.39 16
4 O -0.98 -35.57 17.13 -127.65 -2.19 -37.76 16
5 O -0.96 -26.41 17.12 -127.65 -2.19 -28.59 16
6 C -0.69 -18.09 5.66 22.27 0.13 -17.96 16
7 C 0.02 0.48 9.47 22.27 0.21 0.70 16
8 C -0.15 -2.63 10.05 22.27 0.22 -2.40 16
9 C 0.02 0.58 9.52 22.27 0.21 0.79 16
10 C -0.70 -22.28 5.07 22.27 0.11 -22.16 16
11 S 2.70 101.46 5.72 -56.49 -0.32 101.14 16
12 O -0.99 -44.66 16.63 -128.00 -2.13 -46.79 16
13 O -0.98 -35.97 17.28 -128.00 -2.21 -38.18 16
14 N -1.10 -44.65 5.46 -172.51 -0.94 -45.60 16
15 C 0.27 13.60 2.89 44.25 0.13 13.73 16
16 H 0.02 1.16 7.50 -2.38 -0.02 1.14 16
17 C -0.15 -7.18 9.29 71.98 0.67 -6.51 16
18 C -0.54 -29.32 8.76 25.60 0.22 -29.10 16
19 H 0.07 3.59 7.81 -2.91 -0.02 3.57 16
20 C 0.01 0.82 5.30 84.65 0.45 1.27 16
21 N -0.91 -52.99 11.32 21.45 0.24 -52.75 16
22 Si 0.97 43.25 29.54 68.60 2.03 45.28 16
23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16
24 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16
25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16
26 C 0.05 1.79 7.99 22.27 0.18 1.97 16
27 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16
28 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16
29 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16
30 H 0.17 0.88 8.14 -2.39 -0.02 0.86 16
31 H 0.15 1.62 8.14 -2.39 -0.02 1.60 16
32 H 0.18 2.25 7.57 -2.91 -0.02 2.23 16
33 H 0.19 1.60 8.06 -2.91 -0.02 1.58 16
34 H 0.17 3.20 7.62 -2.91 -0.02 3.18 16
35 H 0.42 15.03 8.83 -96.75 -0.85 14.17 16
36 H 0.03 1.26 6.15 -2.38 -0.01 1.25 16
37 H 0.07 3.66 6.07 -2.39 -0.01 3.64 16
38 H 0.04 2.01 8.14 -2.38 -0.02 1.99 16
39 H 0.27 14.65 8.31 -92.70 -0.77 13.88 16
40 H 0.14 5.02 7.14 -2.91 -0.02 5.00 16
Total: -1.00 -82.83 361.21 -4.05 -86.87
By element:
Atomic # 1 Polarization: 22.45 SS G_CDS: 0.22 Total: 22.67 kcal
Atomic # 6 Polarization: -71.42 SS G_CDS: 3.73 Total: -67.69 kcal
Atomic # 7 Polarization: -97.65 SS G_CDS: -0.70 Total: -98.35 kcal
Atomic # 8 Polarization: -142.61 SS G_CDS: -8.71 Total: -151.32 kcal
Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal
Atomic # 16 Polarization: 163.15 SS G_CDS: -0.61 Total: 162.53 kcal
Total: -82.83 -4.05 -86.87 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000157149149.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -59.837 kcal
(2) G-P(sol) polarization free energy of solvation -82.825 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.663 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.049 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.874 kcal
(6) G-S(sol) free energy of system = (1) + (5) -146.712 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds