Wall clock time and date at job start Wed Apr 1 2020 04:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 S 1.81403 * 109.47088 * 2 1 4 4 O 1.42099 * 110.54217 * 68.37656 * 3 2 1 5 5 O 1.42097 * 110.54258 * 291.62735 * 3 2 1 6 6 C 1.76199 * 104.44785 * 180.02562 * 3 2 1 7 7 C 1.38260 * 119.99860 * 90.00218 * 6 3 2 8 8 C 1.38214 * 119.99662 * 179.97438 * 7 6 3 9 9 C 1.38256 * 120.00160 * 359.97438 * 8 7 6 10 10 C 1.38211 * 120.00062 * 0.26318 * 9 8 7 11 11 S 1.76195 * 120.00141 * 179.72267 * 10 9 8 12 12 O 1.42101 * 106.40262 * 203.53854 * 11 10 9 13 13 O 1.42095 * 106.40258 * 336.45281 * 11 10 9 14 14 N 1.65595 * 107.22212 * 89.99412 * 11 10 9 15 15 C 1.46500 * 120.00061 * 65.00033 * 14 11 10 16 16 H 1.09005 * 109.47336 * 25.00158 * 15 14 11 17 17 C 1.53004 * 109.47339 * 265.00182 * 15 14 11 18 18 C 1.50698 * 109.47410 * 145.00218 * 15 14 11 19 19 H 1.08001 * 119.99580 * 359.97438 * 18 15 14 20 20 C 1.37872 * 120.00362 * 180.02562 * 18 15 14 21 21 N 1.31515 * 119.99863 * 359.97438 * 20 18 15 22 22 Si 1.86795 * 120.00354 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.47404 * 89.99503 * 22 20 18 24 24 H 1.48496 * 109.47520 * 209.99644 * 22 20 18 25 25 H 1.48503 * 109.47139 * 329.99928 * 22 20 18 26 26 C 1.38212 * 120.00083 * 269.97720 * 6 3 2 27 27 H 1.08996 * 109.46979 * 59.99688 * 1 2 3 28 28 H 1.08995 * 109.47143 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46780 * 300.00261 * 1 2 3 30 30 H 1.09000 * 109.46910 * 240.00217 * 2 1 3 31 31 H 1.08992 * 109.47106 * 119.99829 * 2 1 3 32 32 H 1.07997 * 119.99889 * 359.97438 * 7 6 3 33 33 H 1.07999 * 119.99762 * 179.97438 * 8 7 6 34 34 H 1.08002 * 119.99676 * 179.97438 * 9 8 7 35 35 H 0.96997 * 120.00336 * 245.00414 * 14 11 10 36 36 H 1.09004 * 109.46961 * 59.99499 * 17 15 14 37 37 H 1.08992 * 109.47079 * 179.97438 * 17 15 14 38 38 H 1.09005 * 109.46887 * 300.00251 * 17 15 14 39 39 H 0.97008 * 120.00080 * 180.02562 * 21 20 18 40 40 H 1.07999 * 119.99957 * 359.97438 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8386 2.3438 1.2370 5 8 1.8386 2.3439 -1.2369 6 6 3.8899 1.5560 -0.0008 7 6 4.5781 1.4957 -1.1984 8 6 5.9549 1.3752 -1.1990 9 6 6.6442 1.3156 -0.0020 10 6 5.9558 1.3709 1.1953 11 16 6.8335 1.2875 2.7208 12 8 5.9077 0.8181 3.6913 13 8 8.0638 0.6341 2.4407 14 7 7.2161 2.8399 3.1518 15 6 6.1522 3.7937 3.4751 16 1 5.2680 3.2518 3.8109 17 6 5.8059 4.6129 2.2301 18 6 6.6210 4.7173 4.5697 19 1 7.6122 4.6048 4.9835 20 6 5.7842 5.7053 5.0436 21 7 4.5770 5.8420 4.5401 22 14 6.3651 6.8497 6.4008 23 1 7.0205 8.0388 5.7991 24 1 5.2010 7.2846 7.2138 25 1 7.3358 6.1357 7.2687 26 6 4.5789 1.4958 1.1959 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 4.0397 1.5428 -2.1335 33 1 6.4924 1.3277 -2.1345 34 1 7.7200 1.2210 -0.0025 35 1 8.1446 3.1178 3.1903 36 1 5.4668 3.9448 1.4383 37 1 5.0141 5.3222 2.4705 38 1 6.6901 5.1548 1.8943 39 1 3.9883 6.5374 4.8732 40 1 4.0415 1.5437 2.1314 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157149149.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:53 Heat of formation + Delta-G solvation = -146.711865 kcal Electronic energy + Delta-G solvation = -27072.915812 eV Core-core repulsion = 23106.111916 eV Total energy + Delta-G solvation = -3966.803896 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.35191 -38.40949 -38.22928 -37.31827 -37.06663 -36.99901 -34.16246 -34.06752 -32.70527 -32.43570 -30.18681 -27.27786 -25.30576 -24.57578 -24.19356 -22.88172 -20.99766 -19.98365 -19.44269 -19.15403 -17.93766 -17.63163 -17.44569 -17.24188 -16.99119 -16.93719 -16.53849 -15.94801 -15.37818 -15.17631 -15.09540 -14.60289 -14.52016 -14.10299 -14.05995 -13.67706 -13.54174 -13.48459 -13.41829 -13.27432 -13.23198 -13.14891 -13.06523 -13.04444 -12.82769 -12.48270 -12.40701 -12.27988 -12.15520 -12.01937 -11.85748 -11.45645 -11.17779 -10.81715 -10.61915 -10.40895 -10.14127 -8.14299 -6.30429 -1.02060 -0.67470 -0.46615 -0.18738 1.44591 1.46077 1.56378 1.75659 1.93072 2.20857 2.44202 2.69018 2.87746 3.03159 3.14953 3.31663 3.63906 3.68841 3.79793 3.86492 3.89848 4.23716 4.31783 4.38816 4.47125 4.59553 4.69739 4.74196 4.82205 4.83016 4.88037 4.93907 4.98801 5.07623 5.12822 5.54878 5.58006 5.70476 6.00511 6.07327 6.37639 6.80161 7.39573 8.90904 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.011367 B = 0.004347 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.590569 B = 6439.679618 C = 7828.079027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.578 4.578 3 S 2.482 3.518 4 O -0.978 6.978 5 O -0.959 6.959 6 C -0.686 4.686 7 C 0.025 3.975 8 C -0.147 4.147 9 C 0.024 3.976 10 C -0.698 4.698 11 S 2.700 3.300 12 O -0.994 6.994 13 O -0.980 6.980 14 N -1.098 6.098 15 C 0.271 3.729 16 H 0.021 0.979 17 C -0.150 4.150 18 C -0.543 4.543 19 H 0.070 0.930 20 C 0.015 3.985 21 N -0.914 5.914 22 Si 0.966 3.034 23 H -0.271 1.271 24 H -0.285 1.285 25 H -0.267 1.267 26 C 0.054 3.946 27 H 0.081 0.919 28 H 0.114 0.886 29 H 0.067 0.933 30 H 0.175 0.825 31 H 0.154 0.846 32 H 0.181 0.819 33 H 0.187 0.813 34 H 0.167 0.833 35 H 0.420 0.580 36 H 0.029 0.971 37 H 0.067 0.933 38 H 0.045 0.955 39 H 0.266 0.734 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.802 -13.306 -16.009 21.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.712 4.712 3 S 2.665 3.335 4 O -0.976 6.976 5 O -0.956 6.956 6 C -0.772 4.772 7 C 0.006 3.994 8 C -0.166 4.166 9 C 0.005 3.995 10 C -0.787 4.787 11 S 2.791 3.209 12 O -0.984 6.984 13 O -0.970 6.970 14 N -0.859 5.859 15 C 0.166 3.834 16 H 0.038 0.962 17 C -0.210 4.210 18 C -0.582 4.582 19 H 0.088 0.912 20 C -0.185 4.185 21 N -0.553 5.553 22 Si 0.791 3.209 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.192 1.192 26 C 0.034 3.966 27 H 0.100 0.900 28 H 0.132 0.868 29 H 0.086 0.914 30 H 0.193 0.807 31 H 0.172 0.828 32 H 0.199 0.801 33 H 0.204 0.796 34 H 0.185 0.815 35 H 0.255 0.745 36 H 0.048 0.952 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.375 -13.210 -15.513 20.653 hybrid contribution 0.730 0.781 0.618 1.235 sum -2.645 -12.430 -14.895 19.579 Atomic orbital electron populations 1.21797 0.89395 1.07068 1.04048 1.30025 1.07642 1.18526 1.15034 1.05919 0.73783 0.80204 0.73562 1.93602 1.83348 1.74735 1.45870 1.93517 1.83170 1.74323 1.44636 1.30830 1.26871 1.20127 0.99398 1.21731 0.95689 0.85069 0.96894 1.21911 0.94301 1.00966 0.99459 1.21623 1.01685 0.85377 0.90793 1.30971 1.06231 1.20361 1.21170 1.01310 0.72896 0.72664 0.73998 1.93535 1.65903 1.79936 1.59065 1.93513 1.43676 1.73670 1.86135 1.55306 1.16640 1.29957 1.83974 1.18336 0.84737 0.86948 0.93403 0.96164 1.22153 1.01563 1.00746 0.96512 1.21566 1.01556 1.15334 1.19770 0.91222 1.25755 0.94843 0.98884 0.99060 1.70026 1.08092 1.33944 1.43223 0.85440 0.77781 0.78839 0.78851 1.19666 1.21109 1.19190 1.20710 0.93112 0.84518 0.98295 0.89984 0.86782 0.91369 0.80736 0.82796 0.80150 0.79573 0.81523 0.74471 0.95188 0.91419 0.93637 0.92513 0.84670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.92 71.98 0.71 -1.21 16 2 C -0.58 -7.29 6.70 71.98 0.48 -6.80 16 3 S 2.48 61.68 5.16 -56.49 -0.29 61.39 16 4 O -0.98 -35.57 17.13 -127.65 -2.19 -37.76 16 5 O -0.96 -26.41 17.12 -127.65 -2.19 -28.59 16 6 C -0.69 -18.09 5.66 22.27 0.13 -17.96 16 7 C 0.02 0.48 9.47 22.27 0.21 0.70 16 8 C -0.15 -2.63 10.05 22.27 0.22 -2.40 16 9 C 0.02 0.58 9.52 22.27 0.21 0.79 16 10 C -0.70 -22.28 5.07 22.27 0.11 -22.16 16 11 S 2.70 101.46 5.72 -56.49 -0.32 101.14 16 12 O -0.99 -44.66 16.63 -128.00 -2.13 -46.79 16 13 O -0.98 -35.97 17.28 -128.00 -2.21 -38.18 16 14 N -1.10 -44.65 5.46 -172.51 -0.94 -45.60 16 15 C 0.27 13.60 2.89 44.25 0.13 13.73 16 16 H 0.02 1.16 7.50 -2.38 -0.02 1.14 16 17 C -0.15 -7.18 9.29 71.98 0.67 -6.51 16 18 C -0.54 -29.32 8.76 25.60 0.22 -29.10 16 19 H 0.07 3.59 7.81 -2.91 -0.02 3.57 16 20 C 0.01 0.82 5.30 84.65 0.45 1.27 16 21 N -0.91 -52.99 11.32 21.45 0.24 -52.75 16 22 Si 0.97 43.25 29.54 68.60 2.03 45.28 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 C 0.05 1.79 7.99 22.27 0.18 1.97 16 27 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.17 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.15 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.18 2.25 7.57 -2.91 -0.02 2.23 16 33 H 0.19 1.60 8.06 -2.91 -0.02 1.58 16 34 H 0.17 3.20 7.62 -2.91 -0.02 3.18 16 35 H 0.42 15.03 8.83 -96.75 -0.85 14.17 16 36 H 0.03 1.26 6.15 -2.38 -0.01 1.25 16 37 H 0.07 3.66 6.07 -2.39 -0.01 3.64 16 38 H 0.04 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.27 14.65 8.31 -92.70 -0.77 13.88 16 40 H 0.14 5.02 7.14 -2.91 -0.02 5.00 16 Total: -1.00 -82.83 361.21 -4.05 -86.87 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: 0.22 Total: 22.67 kcal Atomic # 6 Polarization: -71.42 SS G_CDS: 3.73 Total: -67.69 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -0.70 Total: -98.35 kcal Atomic # 8 Polarization: -142.61 SS G_CDS: -8.71 Total: -151.32 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: 163.15 SS G_CDS: -0.61 Total: 162.53 kcal Total: -82.83 -4.05 -86.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157149149.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.837 kcal (2) G-P(sol) polarization free energy of solvation -82.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds