Wall clock time and date at job start Wed Apr 1 2020 04:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.39680 * 119.99762 * 2 1 4 4 C 1.38933 * 120.07051 * 154.72296 * 3 2 1 5 5 C 1.38076 * 119.92340 * 179.79281 * 4 3 2 6 6 C 1.38313 * 120.07411 * 0.49153 * 5 4 3 7 7 C 1.38262 * 120.14795 * 359.73865 * 6 5 4 8 8 S 1.76204 * 119.96131 * 180.02562 * 7 6 5 9 9 C 1.81410 * 104.44697 * 270.02428 * 8 7 6 10 10 O 1.42096 * 104.27771 * 26.09108 * 8 7 6 11 11 O 1.42100 * 104.27624 * 153.95349 * 8 7 6 12 12 C 1.38127 * 120.07615 * 0.02945 * 7 6 5 13 13 S 1.65599 * 120.00054 * 180.02562 * 2 1 3 14 14 O 1.42105 * 104.27655 * 153.92607 * 13 2 1 15 15 O 1.42101 * 104.27764 * 26.07044 * 13 2 1 16 16 C 1.81395 * 104.44748 * 269.99913 * 13 2 1 17 17 C 1.52999 * 109.46986 * 180.02562 * 16 13 2 18 18 C 1.50700 * 109.47535 * 180.02562 * 17 16 13 19 19 H 1.08006 * 119.99840 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00463 * 180.02562 * 18 17 16 21 21 N 1.31518 * 120.00062 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00103 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47261 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47286 * 119.99607 * 22 20 18 25 25 H 1.48501 * 109.47023 * 239.99779 * 22 20 18 26 26 H 1.08994 * 109.47028 * 269.99623 * 1 2 3 27 27 H 1.08993 * 109.47216 * 29.99770 * 1 2 3 28 28 H 1.08996 * 109.46988 * 149.99569 * 1 2 3 29 29 H 1.07998 * 120.04023 * 0.02562 * 4 3 2 30 30 H 1.07998 * 119.96752 * 180.21426 * 5 4 3 31 31 H 1.07998 * 119.92673 * 179.76945 * 6 5 4 32 32 H 1.08994 * 109.46999 * 60.00163 * 9 8 7 33 33 H 1.08997 * 109.47042 * 180.02562 * 9 8 7 34 34 H 1.08998 * 109.46897 * 300.00140 * 9 8 7 35 35 H 1.08002 * 120.03955 * 179.97438 * 12 7 6 36 36 H 1.09003 * 109.47393 * 299.99669 * 16 13 2 37 37 H 1.08994 * 109.47678 * 60.00285 * 16 13 2 38 38 H 1.09004 * 109.47080 * 299.99725 * 17 16 13 39 39 H 1.09005 * 109.47285 * 59.99790 * 17 16 13 40 40 H 0.96996 * 119.99792 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2097 0.0000 4 6 3.4530 1.2690 0.5134 5 6 4.1422 2.4655 0.5080 6 6 3.5463 3.6063 0.0015 7 6 2.2612 3.5518 -0.5058 8 16 1.5071 5.0079 -1.1504 9 6 0.6699 5.7534 0.2759 10 8 2.6008 5.8152 -1.5644 11 8 0.5568 4.5241 -2.0896 12 6 1.5680 2.3571 -0.5078 13 16 2.2930 -1.4341 -0.0006 14 8 3.5395 -1.1188 -0.6058 15 8 1.3970 -2.3559 -0.6063 16 6 2.5194 -1.8268 1.7558 17 6 3.2820 -3.1465 1.8891 18 6 3.4695 -3.4732 3.3483 19 1 3.0837 -2.8060 4.1050 20 6 4.1345 -4.6232 3.7174 21 7 4.6048 -5.4354 2.7961 22 14 4.3675 -5.0276 5.5261 23 1 3.7509 -3.9611 6.3553 24 1 3.7191 -6.3285 5.8300 25 1 5.8183 -5.1145 5.8310 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3633 -0.8899 -0.5139 29 1 3.9174 0.3795 0.9128 30 1 5.1460 2.5117 0.9037 31 1 4.0861 4.5417 0.0018 32 1 1.4035 5.9830 1.0486 33 1 0.1698 6.6706 -0.0349 34 1 -0.0671 5.0541 0.6709 35 1 0.5640 2.3152 -0.9038 36 1 3.0867 -1.0297 2.2362 37 1 1.5453 -1.9197 2.2358 38 1 2.7151 -3.9439 1.4087 39 1 4.2562 -3.0533 1.4092 40 1 5.0723 -6.2446 3.0558 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157657547.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:03 Heat of formation + Delta-G solvation = -103.928261 kcal Electronic energy + Delta-G solvation = -26270.679664 eV Core-core repulsion = 22305.731005 eV Total energy + Delta-G solvation = -3964.948660 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.91690 -37.39920 -36.98288 -36.29825 -36.11749 -35.66505 -34.04421 -31.69840 -31.27924 -30.16506 -29.87766 -26.68437 -25.75159 -23.70750 -22.41068 -21.64554 -19.94610 -18.81917 -18.18255 -17.48557 -16.81735 -16.54549 -16.40521 -16.30544 -15.94029 -15.75863 -15.00709 -14.82293 -14.62008 -14.33648 -14.12187 -13.74728 -13.60634 -13.59243 -13.10278 -12.83346 -12.59251 -12.51502 -12.36878 -12.31007 -11.94396 -11.91590 -11.83971 -11.79474 -11.61544 -11.37487 -11.18445 -11.11139 -10.92507 -10.66167 -10.51558 -10.43882 -9.83925 -9.50490 -9.30762 -8.60305 -8.30780 -6.22073 -4.28599 -0.27684 0.39331 0.61993 1.10316 2.53466 2.62065 3.19012 3.19347 3.26662 3.29508 3.64853 3.79359 4.04949 4.24349 4.28766 4.32518 4.36670 4.49828 4.67472 4.79865 4.88604 5.09054 5.13416 5.21767 5.22004 5.28960 5.33546 5.48249 5.51123 5.61635 5.65980 5.80125 6.00392 6.10106 6.29082 6.32908 6.74117 7.15815 7.20655 7.70493 8.04954 8.74903 9.37027 10.88873 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.020151 B = 0.002708 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.144978 B =10336.292248 C =10875.703035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.950 5.950 3 C 0.166 3.834 4 C -0.101 4.101 5 C -0.099 4.099 6 C -0.054 4.054 7 C -0.634 4.634 8 S 2.502 3.498 9 C -0.649 4.649 10 O -0.937 6.937 11 O -0.938 6.938 12 C -0.065 4.065 13 S 2.573 3.427 14 O -0.949 6.949 15 O -0.950 6.950 16 C -0.584 4.584 17 C 0.028 3.972 18 C -0.522 4.522 19 H 0.063 0.937 20 C 0.059 3.941 21 N -0.889 5.889 22 Si 0.901 3.099 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.281 1.281 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.146 0.854 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.568 21.964 -2.347 23.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.772 5.772 3 C 0.068 3.932 4 C -0.122 4.122 5 C -0.118 4.118 6 C -0.074 4.074 7 C -0.722 4.722 8 S 2.681 3.319 9 C -0.799 4.799 10 O -0.934 6.934 11 O -0.935 6.935 12 C -0.088 4.088 13 S 2.674 3.326 14 O -0.939 6.939 15 O -0.940 6.940 16 C -0.718 4.718 17 C -0.011 4.011 18 C -0.562 4.562 19 H 0.081 0.919 20 C -0.144 4.144 21 N -0.527 5.527 22 Si 0.728 3.272 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.207 1.207 26 H 0.086 0.914 27 H 0.100 0.900 28 H 0.115 0.885 29 H 0.158 0.842 30 H 0.159 0.841 31 H 0.161 0.839 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.164 0.836 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.279 21.541 -4.053 23.430 hybrid contribution 0.084 -0.682 2.404 2.500 sum -8.195 20.859 -1.649 22.472 Atomic orbital electron populations 1.21893 0.77292 1.05336 1.03231 1.55903 1.16019 1.19826 1.85456 1.17532 0.92346 0.86174 0.97132 1.21548 0.93243 0.99927 0.97524 1.21106 1.00235 0.91512 0.98975 1.20870 0.92501 0.99705 0.94354 1.30319 1.06616 1.17247 1.17971 1.05119 0.75265 0.74845 0.76645 1.30221 1.14865 1.13794 1.21059 1.93588 1.51884 1.68411 1.79537 1.93590 1.63254 1.79640 1.57014 1.20570 1.00716 0.90614 0.96859 1.06499 0.73899 0.72274 0.79960 1.93594 1.42873 1.82154 1.75277 1.93556 1.64711 1.60550 1.75198 1.30508 1.10814 1.11130 1.19318 1.19010 0.94969 0.86804 1.00322 1.21000 1.37383 1.07255 0.90536 0.91888 1.25072 0.95173 0.96029 0.98158 1.69959 1.37050 1.12690 1.32952 0.86392 0.78049 0.78439 0.84290 1.19614 1.20722 1.20717 0.91360 0.89982 0.88511 0.84161 0.84115 0.83928 0.84842 0.85079 0.84902 0.83601 0.85955 0.85714 0.94671 0.94658 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 10.45 59.85 0.63 1.31 16 2 N -0.95 -13.09 3.32 -65.40 -0.22 -13.31 16 3 C 0.17 2.23 6.06 -83.79 -0.51 1.72 16 4 C -0.10 -1.37 8.42 -39.38 -0.33 -1.70 16 5 C -0.10 -1.09 10.04 -39.61 -0.40 -1.49 16 6 C -0.05 -0.53 9.47 -39.54 -0.37 -0.91 16 7 C -0.63 -6.34 5.65 -39.61 -0.22 -6.56 16 8 S 2.50 19.93 5.80 -107.50 -0.62 19.31 16 9 C -0.65 -2.21 10.80 101.05 1.09 -1.12 16 10 O -0.94 -10.24 17.12 -57.54 -0.99 -11.22 16 11 O -0.94 -10.56 17.12 -57.54 -0.99 -11.54 16 12 C -0.06 -0.74 8.77 -39.38 -0.35 -1.08 16 13 S 2.57 45.37 4.79 -107.50 -0.51 44.85 16 14 O -0.95 -19.03 15.19 -57.54 -0.87 -19.91 16 15 O -0.95 -18.98 16.57 -57.54 -0.95 -19.93 16 16 C -0.58 -10.53 5.98 37.16 0.22 -10.31 16 17 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 18 C -0.52 -13.86 9.11 -34.44 -0.31 -14.18 16 19 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 21 N -0.89 -25.70 13.29 55.43 0.74 -24.97 16 22 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.65 5.89 -51.93 -0.31 0.34 16 28 H 0.10 1.05 6.91 -51.93 -0.36 0.69 16 29 H 0.14 1.97 5.14 -52.49 -0.27 1.70 16 30 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 31 H 0.14 1.05 7.56 -52.49 -0.40 0.66 16 32 H 0.13 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.13 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.13 0.29 8.14 -51.92 -0.42 -0.14 16 35 H 0.15 1.36 5.67 -52.49 -0.30 1.07 16 36 H 0.12 1.94 7.16 -51.92 -0.37 1.57 16 37 H 0.12 1.98 8.14 -51.93 -0.42 1.56 16 38 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 358.68 15.07 5.41 5.41 Total: -1.00 -38.78 358.68 -9.75 -48.53 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -4.92 Total: -0.50 kcal Atomic # 6 Polarization: -31.46 SS G_CDS: -0.79 Total: -32.25 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.52 Total: -38.27 kcal Atomic # 8 Polarization: -58.80 SS G_CDS: -3.80 Total: -62.60 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 65.30 SS G_CDS: -1.14 Total: 64.16 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -38.78 -9.75 -48.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157657547.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.397 kcal (2) G-P(sol) polarization free energy of solvation -38.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds