Wall clock time and date at job start Wed Apr 1 2020 04:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.39680 * 119.99762 * 2 1 4 4 C 1.38933 * 120.07051 * 154.72296 * 3 2 1 5 5 C 1.38076 * 119.92340 * 179.79281 * 4 3 2 6 6 C 1.38313 * 120.07411 * 0.49153 * 5 4 3 7 7 C 1.38262 * 120.14795 * 359.73865 * 6 5 4 8 8 S 1.76204 * 119.96131 * 180.02562 * 7 6 5 9 9 C 1.81410 * 104.44697 * 270.02428 * 8 7 6 10 10 O 1.42096 * 104.27771 * 26.09108 * 8 7 6 11 11 O 1.42100 * 104.27624 * 153.95349 * 8 7 6 12 12 C 1.38127 * 120.07615 * 0.02945 * 7 6 5 13 13 S 1.65599 * 120.00054 * 180.02562 * 2 1 3 14 14 O 1.42105 * 104.27655 * 153.92607 * 13 2 1 15 15 O 1.42101 * 104.27764 * 26.07044 * 13 2 1 16 16 C 1.81395 * 104.44748 * 269.99913 * 13 2 1 17 17 C 1.52999 * 109.46986 * 180.02562 * 16 13 2 18 18 C 1.50700 * 109.47535 * 180.02562 * 17 16 13 19 19 H 1.08006 * 119.99840 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00463 * 180.02562 * 18 17 16 21 21 N 1.31518 * 120.00062 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00103 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47261 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47286 * 119.99607 * 22 20 18 25 25 H 1.48501 * 109.47023 * 239.99779 * 22 20 18 26 26 H 1.08994 * 109.47028 * 269.99623 * 1 2 3 27 27 H 1.08993 * 109.47216 * 29.99770 * 1 2 3 28 28 H 1.08996 * 109.46988 * 149.99569 * 1 2 3 29 29 H 1.07998 * 120.04023 * 0.02562 * 4 3 2 30 30 H 1.07998 * 119.96752 * 180.21426 * 5 4 3 31 31 H 1.07998 * 119.92673 * 179.76945 * 6 5 4 32 32 H 1.08994 * 109.46999 * 60.00163 * 9 8 7 33 33 H 1.08997 * 109.47042 * 180.02562 * 9 8 7 34 34 H 1.08998 * 109.46897 * 300.00140 * 9 8 7 35 35 H 1.08002 * 120.03955 * 179.97438 * 12 7 6 36 36 H 1.09003 * 109.47393 * 299.99669 * 16 13 2 37 37 H 1.08994 * 109.47678 * 60.00285 * 16 13 2 38 38 H 1.09004 * 109.47080 * 299.99725 * 17 16 13 39 39 H 1.09005 * 109.47285 * 59.99790 * 17 16 13 40 40 H 0.96996 * 119.99792 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2097 0.0000 4 6 3.4530 1.2690 0.5134 5 6 4.1422 2.4655 0.5080 6 6 3.5463 3.6063 0.0015 7 6 2.2612 3.5518 -0.5058 8 16 1.5071 5.0079 -1.1504 9 6 0.6699 5.7534 0.2759 10 8 2.6008 5.8152 -1.5644 11 8 0.5568 4.5241 -2.0896 12 6 1.5680 2.3571 -0.5078 13 16 2.2930 -1.4341 -0.0006 14 8 3.5395 -1.1188 -0.6058 15 8 1.3970 -2.3559 -0.6063 16 6 2.5194 -1.8268 1.7558 17 6 3.2820 -3.1465 1.8891 18 6 3.4695 -3.4732 3.3483 19 1 3.0837 -2.8060 4.1050 20 6 4.1345 -4.6232 3.7174 21 7 4.6048 -5.4354 2.7961 22 14 4.3675 -5.0276 5.5261 23 1 3.7509 -3.9611 6.3553 24 1 3.7191 -6.3285 5.8300 25 1 5.8183 -5.1145 5.8310 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3633 -0.8899 -0.5139 29 1 3.9174 0.3795 0.9128 30 1 5.1460 2.5117 0.9037 31 1 4.0861 4.5417 0.0018 32 1 1.4035 5.9830 1.0486 33 1 0.1698 6.6706 -0.0349 34 1 -0.0671 5.0541 0.6709 35 1 0.5640 2.3152 -0.9038 36 1 3.0867 -1.0297 2.2362 37 1 1.5453 -1.9197 2.2358 38 1 2.7151 -3.9439 1.4087 39 1 4.2562 -3.0533 1.4092 40 1 5.0723 -6.2446 3.0558 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157657547.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:02 Heat of formation + Delta-G solvation = -134.474892 kcal Electronic energy + Delta-G solvation = -26272.004266 eV Core-core repulsion = 22305.731005 eV Total energy + Delta-G solvation = -3966.273261 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.81599 -38.47634 -38.11680 -37.33927 -37.04454 -36.88448 -35.96737 -33.24274 -32.47400 -31.02850 -30.20111 -27.78824 -27.45656 -24.65942 -23.61338 -23.12583 -20.92453 -19.80643 -19.30331 -18.80361 -18.30696 -17.52339 -17.32261 -17.22457 -17.06861 -16.68412 -16.54417 -16.19688 -15.79295 -15.27456 -15.20985 -14.97322 -14.49280 -14.10281 -13.95316 -13.86707 -13.83495 -13.79558 -13.50826 -13.27107 -13.23822 -13.10139 -13.05194 -12.98596 -12.86077 -12.66545 -12.62591 -12.32510 -12.19649 -12.05805 -11.85696 -11.66753 -11.47194 -11.06066 -10.68517 -10.35857 -9.26174 -8.29060 -6.43535 -1.02450 -0.82635 -0.23275 0.23041 1.38342 1.40777 1.40858 1.54291 1.92319 2.32810 2.36807 2.66860 2.91279 3.05022 3.07485 3.22742 3.33221 3.77857 3.83026 3.95598 3.96460 4.09594 4.18803 4.21863 4.37613 4.47566 4.53839 4.60476 4.65247 4.73504 4.84864 5.00091 5.04440 5.10915 5.19025 5.19526 5.25387 5.43970 5.64828 5.84988 6.00827 6.70183 7.27271 8.83395 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.020151 B = 0.002708 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.144978 B =10336.292248 C =10875.703035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.943 5.943 3 C 0.142 3.858 4 C -0.132 4.132 5 C -0.104 4.104 6 C -0.053 4.053 7 C -0.634 4.634 8 S 2.508 3.492 9 C -0.620 4.620 10 O -0.972 6.972 11 O -0.977 6.977 12 C -0.069 4.069 13 S 2.595 3.405 14 O -0.980 6.980 15 O -0.979 6.979 16 C -0.578 4.578 17 C 0.021 3.979 18 C -0.538 4.538 19 H 0.078 0.922 20 C -0.003 4.003 21 N -0.934 5.934 22 Si 0.974 3.026 23 H -0.254 1.254 24 H -0.279 1.279 25 H -0.279 1.279 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.087 0.913 29 H 0.125 0.875 30 H 0.161 0.839 31 H 0.169 0.831 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.164 0.836 36 H 0.144 0.856 37 H 0.149 0.851 38 H 0.008 0.992 39 H 0.009 0.991 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.082 25.095 -0.228 27.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.769 5.769 3 C 0.045 3.955 4 C -0.153 4.153 5 C -0.123 4.123 6 C -0.072 4.072 7 C -0.720 4.720 8 S 2.690 3.310 9 C -0.774 4.774 10 O -0.969 6.969 11 O -0.974 6.974 12 C -0.091 4.091 13 S 2.696 3.304 14 O -0.970 6.970 15 O -0.969 6.969 16 C -0.712 4.712 17 C -0.018 4.018 18 C -0.577 4.577 19 H 0.096 0.904 20 C -0.202 4.202 21 N -0.573 5.573 22 Si 0.798 3.202 23 H -0.177 1.177 24 H -0.204 1.204 25 H -0.204 1.204 26 H 0.115 0.885 27 H 0.127 0.873 28 H 0.105 0.895 29 H 0.143 0.857 30 H 0.178 0.822 31 H 0.186 0.814 32 H 0.175 0.825 33 H 0.174 0.826 34 H 0.173 0.827 35 H 0.181 0.819 36 H 0.162 0.838 37 H 0.167 0.833 38 H 0.026 0.974 39 H 0.027 0.973 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.767 24.638 -1.957 26.576 hybrid contribution 0.498 -1.470 1.717 2.314 sum -9.269 23.168 -0.241 24.955 Atomic orbital electron populations 1.22276 0.75110 1.06215 1.05473 1.55422 1.17204 1.18620 1.85617 1.17743 0.92683 0.86349 0.98691 1.21653 0.93971 1.00485 0.99196 1.21412 1.01062 0.91065 0.98746 1.21241 0.92560 1.00276 0.93163 1.30728 1.06779 1.17829 1.16627 1.04958 0.74466 0.73787 0.77799 1.30013 1.15203 1.14505 1.17712 1.93543 1.53706 1.68330 1.81357 1.93541 1.63528 1.80255 1.60067 1.20807 1.01632 0.90224 0.96459 1.05489 0.73114 0.72633 0.79199 1.93545 1.44774 1.82892 1.75835 1.93511 1.65324 1.62419 1.75683 1.30359 1.11527 1.08387 1.20891 1.18846 0.94218 0.89425 0.99274 1.21509 1.36881 1.07495 0.91787 0.90376 1.26115 0.94866 0.96007 1.03170 1.70105 1.38278 1.13408 1.35545 0.85254 0.78030 0.78520 0.78394 1.17748 1.20438 1.20422 0.88547 0.87306 0.89459 0.85702 0.82155 0.81366 0.82474 0.82636 0.82705 0.81880 0.83757 0.83252 0.97352 0.97294 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.99 10.45 127.77 1.34 2.32 16 2 N -0.94 -25.52 3.32 -360.82 -1.20 -26.72 16 3 C 0.14 3.72 6.06 38.21 0.23 3.95 16 4 C -0.13 -3.55 8.42 22.40 0.19 -3.36 16 5 C -0.10 -2.18 10.04 22.25 0.22 -1.96 16 6 C -0.05 -0.93 9.47 22.29 0.21 -0.72 16 7 C -0.63 -11.35 5.65 22.25 0.13 -11.22 16 8 S 2.51 33.78 5.80 -56.49 -0.33 33.45 16 9 C -0.62 -1.07 10.80 113.37 1.22 0.15 16 10 O -0.97 -19.49 17.12 -127.65 -2.19 -21.68 16 11 O -0.98 -20.44 17.12 -127.65 -2.19 -22.62 16 12 C -0.07 -1.44 8.77 22.40 0.20 -1.25 16 13 S 2.60 94.29 4.79 -56.49 -0.27 94.02 16 14 O -0.98 -41.29 15.19 -127.65 -1.94 -43.22 16 15 O -0.98 -40.50 16.57 -127.65 -2.12 -42.62 16 16 C -0.58 -21.10 5.98 71.98 0.43 -20.67 16 17 C 0.02 1.09 4.98 29.85 0.15 1.24 16 18 C -0.54 -28.86 9.11 25.60 0.23 -28.62 16 19 H 0.08 3.84 7.74 -2.91 -0.02 3.82 16 20 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 21 N -0.93 -55.80 13.29 21.45 0.28 -55.51 16 22 Si 0.97 42.11 29.54 68.60 2.03 44.14 16 23 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 24 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 26 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.11 1.46 5.89 -2.39 -0.01 1.45 16 28 H 0.09 1.84 6.91 -2.39 -0.02 1.83 16 29 H 0.13 3.65 5.14 -2.91 -0.01 3.64 16 30 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 31 H 0.17 2.03 7.56 -2.91 -0.02 2.00 16 32 H 0.16 -0.29 8.14 -2.39 -0.02 -0.31 16 33 H 0.16 -0.28 8.14 -2.39 -0.02 -0.30 16 34 H 0.15 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.16 2.69 5.67 -2.91 -0.02 2.67 16 36 H 0.14 4.57 7.16 -2.39 -0.02 4.55 16 37 H 0.15 4.63 8.14 -2.39 -0.02 4.61 16 38 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 40 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -87.91 358.68 -1.83 -89.75 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 1.07 Total: 10.86 kcal Atomic # 6 Polarization: -64.85 SS G_CDS: 5.01 Total: -59.84 kcal Atomic # 7 Polarization: -81.31 SS G_CDS: -0.91 Total: -82.23 kcal Atomic # 8 Polarization: -121.72 SS G_CDS: -8.43 Total: -130.15 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Atomic # 16 Polarization: 128.07 SS G_CDS: -0.60 Total: 127.47 kcal Total: -87.91 -1.83 -89.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157657547.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.729 kcal (2) G-P(sol) polarization free energy of solvation -87.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds