Wall clock time and date at job start Wed Apr 1 2020 04:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00473 * 2 1 4 4 H 1.48504 * 109.47203 * 270.00438 * 3 2 1 5 5 H 1.48505 * 109.47103 * 30.00189 * 3 2 1 6 6 H 1.48500 * 109.47286 * 150.00231 * 3 2 1 7 7 C 1.37883 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99624 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00350 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47253 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46927 * 180.02562 * 10 9 7 12 12 S 1.81401 * 109.47106 * 180.02562 * 11 10 9 13 13 O 1.42103 * 110.54524 * 68.36944 * 12 11 10 14 14 O 1.42101 * 110.54113 * 291.62304 * 12 11 10 15 15 N 1.65598 * 104.45052 * 179.97438 * 12 11 10 16 16 C 1.46497 * 119.99882 * 65.00408 * 15 12 11 17 17 C 1.52997 * 109.47184 * 165.00085 * 16 15 12 18 18 H 1.08995 * 109.46988 * 304.99104 * 17 16 15 19 19 O 1.42891 * 109.47533 * 64.99876 * 17 16 15 20 20 C 1.50706 * 109.46958 * 184.99788 * 17 16 15 21 21 C 1.38244 * 119.98773 * 99.99673 * 20 17 16 22 22 C 1.38217 * 120.01084 * 180.02562 * 21 20 17 23 23 C 1.38351 * 119.98541 * 0.25893 * 22 21 20 24 24 Cl 1.73604 * 120.00786 * 179.69323 * 23 22 21 25 25 C 1.38348 * 119.97455 * 359.46866 * 23 22 21 26 26 C 1.38212 * 119.98576 * 0.54994 * 25 23 22 27 27 H 0.96997 * 119.99656 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46716 * 60.00105 * 9 7 2 29 29 H 1.08991 * 109.47076 * 300.00581 * 9 7 2 30 30 H 1.09000 * 109.47168 * 60.00389 * 10 9 7 31 31 H 1.09005 * 109.47416 * 300.00344 * 10 9 7 32 32 H 1.08990 * 109.47791 * 60.00137 * 11 10 9 33 33 H 1.09005 * 109.46714 * 299.99602 * 11 10 9 34 34 H 0.96996 * 120.00057 * 244.99365 * 15 12 11 35 35 H 1.09004 * 109.47301 * 44.99320 * 16 15 12 36 36 H 1.09012 * 109.46770 * 284.99825 * 16 15 12 37 37 H 0.96699 * 114.00474 * 59.99269 * 19 17 16 38 38 H 1.07999 * 119.99331 * 0.02562 * 21 20 17 39 39 H 1.08002 * 120.00169 * 179.97438 * 22 21 20 40 40 H 1.08007 * 120.00586 * 180.25470 * 25 23 22 41 41 H 1.08000 * 119.99226 * 179.72624 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5514 -2.6367 -0.0009 12 16 6.1560 -4.3470 -0.0016 13 8 5.8599 -4.9802 -1.2387 14 8 5.8599 -4.9810 1.2352 15 7 7.8057 -4.2021 -0.0022 16 6 8.4889 -3.6042 1.1476 17 6 9.9839 -3.9207 1.0736 18 1 10.1237 -4.9990 0.9977 19 8 10.5492 -3.2850 -0.0745 20 6 10.6672 -3.4120 2.3169 21 6 10.9695 -4.2848 3.3454 22 6 11.5957 -3.8187 4.4861 23 6 11.9149 -2.4774 4.6006 24 17 12.6942 -1.8899 6.0363 25 6 11.6172 -1.6055 3.5685 26 6 10.9907 -2.0727 2.4286 27 1 -0.4849 0.8400 0.0004 28 1 3.8751 -0.6806 0.8889 29 1 3.8745 -0.6802 -0.8910 30 1 3.6578 -3.1507 -0.8908 31 1 3.6584 -3.1504 0.8892 32 1 5.9148 -2.1229 0.8889 33 1 5.9147 -2.1230 -0.8910 34 1 8.3196 -4.5132 -0.7637 35 1 8.0758 -4.0142 2.0693 36 1 8.3451 -2.5237 1.1341 37 1 10.4610 -2.3220 -0.0743 38 1 10.7164 -5.3311 3.2576 39 1 11.8314 -4.5007 5.2897 40 1 11.8699 -0.5590 3.6557 41 1 10.7542 -1.3913 1.6247 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159309525.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:06 Heat of formation + Delta-G solvation = -119.605195 kcal Electronic energy + Delta-G solvation = -25091.753251 eV Core-core repulsion = 21124.081082 eV Total energy + Delta-G solvation = -3967.672169 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.36193 -38.05637 -37.00250 -36.75990 -35.87028 -34.85563 -34.78820 -32.24707 -32.00219 -31.57207 -28.42422 -28.00423 -24.10224 -23.65255 -23.37067 -21.72352 -20.55518 -19.37030 -18.33964 -17.72390 -17.16095 -16.91987 -16.69189 -16.19082 -15.95961 -15.49039 -15.19557 -14.95788 -14.52656 -14.26207 -14.21921 -14.05151 -13.96397 -13.31930 -12.92333 -12.89025 -12.38219 -12.30335 -12.18825 -12.12370 -11.99067 -11.97577 -11.90173 -11.62077 -11.55739 -11.30664 -11.03715 -10.98279 -10.68776 -10.13812 -10.03214 -9.87593 -9.60281 -9.47805 -9.29064 -9.14052 -8.61551 -6.11026 -4.10458 0.30474 0.53833 0.73263 1.63740 2.67824 3.02091 3.23934 3.31463 3.33008 3.81094 3.86220 3.98943 4.15759 4.26810 4.30077 4.35959 4.37491 4.57770 4.73079 4.84889 4.90572 5.00583 5.08962 5.11249 5.22612 5.28109 5.37263 5.48220 5.62772 5.67876 5.70430 5.90586 6.09802 6.19343 6.21785 6.62715 6.77056 7.03635 7.08608 7.22682 7.68087 8.44828 8.93422 9.49904 11.02287 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.010516 B = 0.002408 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.896487 B =11624.941872 C =13370.085961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.098 4.098 11 C -0.616 4.616 12 S 2.604 3.396 13 O -0.958 6.958 14 O -0.960 6.960 15 N -1.121 6.121 16 C 0.086 3.914 17 C 0.145 3.855 18 H 0.121 0.879 19 O -0.548 6.548 20 C -0.115 4.115 21 C -0.092 4.092 22 C -0.107 4.107 23 C -0.032 4.032 24 Cl -0.069 7.069 25 C -0.106 4.106 26 C -0.097 4.097 27 H 0.264 0.736 28 H 0.019 0.981 29 H 0.016 0.984 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.420 0.580 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.377 0.623 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.288 -5.278 6.893 30.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.043 4.043 10 C -0.137 4.137 11 C -0.747 4.747 12 S 2.699 3.301 13 O -0.949 6.949 14 O -0.949 6.949 15 N -0.880 5.880 16 C -0.041 4.041 17 C 0.084 3.916 18 H 0.138 0.862 19 O -0.354 6.354 20 C -0.116 4.116 21 C -0.110 4.110 22 C -0.126 4.126 23 C -0.059 4.059 24 Cl -0.040 7.040 25 C -0.125 4.125 26 C -0.116 4.116 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.034 0.966 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.255 0.745 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.225 0.775 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 28.771 -6.498 7.028 30.322 hybrid contribution 0.667 2.254 0.092 2.353 sum 29.438 -4.244 7.120 30.583 Atomic orbital electron populations 1.69909 1.06290 1.27002 1.50615 1.25033 0.94767 0.99187 0.94460 0.86768 0.80282 0.83619 0.78520 1.20216 1.21259 1.19105 1.21130 0.89239 0.94780 1.51406 0.90723 1.19525 0.97367 0.90704 0.96681 1.21317 0.86576 1.02973 1.02865 1.30599 1.09605 1.23412 1.11084 1.05229 0.72599 0.77970 0.74294 1.93597 1.82580 1.73612 1.45072 1.93577 1.82888 1.72766 1.45713 1.55661 1.26511 1.78262 1.27516 1.22007 0.93521 0.98603 0.90014 1.21005 0.89515 0.98708 0.82364 0.86185 1.86663 1.81502 1.24923 1.42289 1.20552 0.99898 0.94282 0.96858 1.21027 0.97384 1.00230 0.92389 1.21098 0.98914 0.93756 0.98827 1.21020 1.00782 0.94402 0.89708 1.98390 1.79315 1.88683 1.37623 1.21053 0.98977 1.00023 0.92442 1.20873 0.98168 0.94918 0.97607 0.92601 0.96228 0.96616 0.90926 0.90938 0.85624 0.85222 0.74535 0.88809 0.91069 0.77462 0.84499 0.84566 0.84594 0.84945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.12 27.47 -169.99 -4.67 16.45 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 7 C -0.53 -14.83 9.66 -34.44 -0.33 -15.16 16 8 H 0.07 2.25 7.99 -52.48 -0.42 1.84 16 9 C 0.00 -0.09 4.04 -27.89 -0.11 -0.21 16 10 C -0.10 -1.84 5.16 -26.73 -0.14 -1.98 16 11 C -0.62 -8.22 6.07 37.16 0.23 -7.99 16 12 S 2.60 34.06 5.46 -107.50 -0.59 33.47 16 13 O -0.96 -15.74 18.08 -57.54 -1.04 -16.78 16 14 O -0.96 -15.44 17.50 -57.54 -1.01 -16.45 16 15 N -1.12 -9.97 5.85 -10.61 -0.06 -10.04 16 16 C 0.09 0.61 5.75 -4.04 -0.02 0.59 16 17 C 0.14 0.88 3.30 -27.88 -0.09 0.79 16 18 H 0.12 0.71 8.00 -51.93 -0.42 0.29 16 19 O -0.55 -3.45 12.99 -35.23 -0.46 -3.90 16 20 C -0.11 -0.71 4.97 -104.62 -0.52 -1.23 16 21 C -0.09 -0.57 9.67 -39.59 -0.38 -0.95 16 22 C -0.11 -0.70 9.83 -39.55 -0.39 -1.09 16 23 C -0.03 -0.23 6.32 -39.50 -0.25 -0.48 16 24 Cl -0.07 -0.50 28.96 -51.86 -1.50 -2.01 16 25 C -0.11 -0.68 9.83 -39.55 -0.39 -1.07 16 26 C -0.10 -0.55 9.32 -39.59 -0.37 -0.92 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 29 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.13 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.13 1.48 8.14 -51.92 -0.42 1.06 16 34 H 0.42 3.29 8.47 -34.47 -0.29 3.00 16 35 H 0.09 0.73 7.70 -51.93 -0.40 0.33 16 36 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 37 H 0.38 1.22 7.50 45.56 0.34 1.56 16 38 H 0.14 0.61 8.04 -52.49 -0.42 0.18 16 39 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.14 0.69 8.06 -52.48 -0.42 0.26 16 41 H 0.13 0.43 6.79 -52.49 -0.36 0.07 16 LS Contribution 374.80 15.07 5.65 5.65 Total: -1.00 -36.85 374.80 -10.63 -47.48 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -4.86 Total: 0.70 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: -2.87 Total: -27.86 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.71 Total: -36.74 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -2.50 Total: -37.13 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Atomic # 16 Polarization: 34.06 SS G_CDS: -0.59 Total: 33.47 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.50 Total: -2.01 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.85 -10.63 -47.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159309525.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.129 kcal (2) G-P(sol) polarization free energy of solvation -36.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds