Wall clock time and date at job start Wed Apr 1 2020 04:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00330 * 2 1 4 4 H 1.48493 * 109.47219 * 269.99810 * 3 2 1 5 5 H 1.48496 * 109.47215 * 30.00285 * 3 2 1 6 6 H 1.48503 * 109.47027 * 149.99721 * 3 2 1 7 7 C 1.37878 * 119.99494 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99733 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00265 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.47243 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46926 * 179.97438 * 10 9 7 12 12 S 1.81400 * 109.47062 * 179.97438 * 11 10 9 13 13 O 1.42102 * 110.54222 * 68.37513 * 12 11 10 14 14 O 1.42108 * 110.54320 * 291.63134 * 12 11 10 15 15 N 1.65594 * 104.44998 * 180.02562 * 12 11 10 16 16 C 1.46496 * 120.00045 * 65.00485 * 15 12 11 17 17 C 1.52998 * 109.47184 * 164.99923 * 16 15 12 18 18 H 1.09001 * 109.47411 * 59.99985 * 17 16 15 19 19 O 1.42906 * 109.47205 * 299.99786 * 17 16 15 20 20 C 1.50696 * 109.47396 * 179.97438 * 17 16 15 21 21 C 1.38247 * 119.98658 * 265.00270 * 20 17 16 22 22 C 1.38216 * 120.01497 * 179.97438 * 21 20 17 23 23 C 1.38357 * 119.98603 * 0.02562 * 22 21 20 24 24 Cl 1.73599 * 120.01134 * 180.02562 * 23 22 21 25 25 C 1.38347 * 119.97107 * 0.28224 * 23 22 21 26 26 C 1.38219 * 119.98930 * 359.40143 * 25 23 22 27 27 H 0.97002 * 119.99664 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47346 * 60.00129 * 9 7 2 29 29 H 1.09004 * 109.47382 * 299.99911 * 9 7 2 30 30 H 1.09003 * 109.47002 * 59.99638 * 10 9 7 31 31 H 1.08992 * 109.46867 * 299.99771 * 10 9 7 32 32 H 1.09004 * 109.46736 * 60.00067 * 11 10 9 33 33 H 1.08992 * 109.47494 * 299.99795 * 11 10 9 34 34 H 0.97003 * 119.99915 * 245.00136 * 15 12 11 35 35 H 1.09004 * 109.47452 * 44.99631 * 16 15 12 36 36 H 1.09000 * 109.46831 * 284.99568 * 16 15 12 37 37 H 0.96695 * 113.99566 * 299.99644 * 19 17 16 38 38 H 1.08003 * 119.99321 * 359.97438 * 21 20 17 39 39 H 1.08002 * 120.00776 * 180.02562 * 22 21 20 40 40 H 1.08000 * 120.00661 * 179.71600 * 25 23 22 41 41 H 1.07997 * 119.99445 * 180.32231 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6622 -0.0015 11 6 1.4800 -4.9872 -0.0020 12 16 2.6586 -6.3660 -0.0025 13 8 3.3553 -6.4269 1.2346 14 8 3.3556 -6.4259 -1.2394 15 7 1.7082 -7.7221 -0.0037 16 6 0.8492 -8.0135 -1.1541 17 6 0.3756 -9.4665 -1.0819 18 1 -0.1864 -9.6202 -0.1607 19 8 1.5080 -10.3381 -1.1001 20 6 -0.5085 -9.7661 -2.2650 21 6 -1.8816 -9.6587 -2.1461 22 6 -2.6930 -9.9328 -3.2310 23 6 -2.1308 -10.3153 -4.4359 24 17 -3.1492 -10.6591 -5.7990 25 6 -0.7569 -10.4288 -4.5524 26 6 0.0539 -10.1480 -3.4687 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5563 -0.8919 29 1 0.6238 -2.5575 0.8880 30 1 2.8711 -3.6049 0.8890 31 1 2.8723 -3.6041 -0.8909 32 1 0.8537 -5.0446 -0.8923 33 1 0.8530 -5.0451 0.8876 34 1 1.7203 -8.3235 0.7572 35 1 1.4112 -7.8598 -2.0754 36 1 -0.0145 -7.3487 -1.1402 37 1 2.0552 -10.2554 -1.8931 38 1 -2.3204 -9.3605 -1.2054 39 1 -3.7657 -9.8485 -3.1381 40 1 -0.3176 -10.7317 -5.4913 41 1 1.1267 -10.2315 -3.5610 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159309660.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:08 Heat of formation + Delta-G solvation = -150.273547 kcal Electronic energy + Delta-G solvation = -25022.568857 eV Core-core repulsion = 21053.566809 eV Total energy + Delta-G solvation = -3969.002049 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.79136 -38.55409 -38.12473 -37.26447 -37.02482 -36.45374 -35.43454 -34.15554 -32.47957 -31.96926 -29.64283 -28.56214 -25.61439 -24.57605 -23.80539 -22.46733 -22.11692 -20.33768 -18.86564 -18.69395 -18.53970 -17.76527 -17.21425 -16.99032 -16.94149 -16.47819 -16.17466 -15.94237 -15.56830 -15.39251 -14.96272 -14.50350 -14.45256 -14.43370 -14.11519 -13.77509 -13.49648 -13.34526 -13.17521 -13.14174 -13.09461 -12.95192 -12.75699 -12.65150 -12.60523 -12.47880 -12.15051 -12.00858 -11.76336 -11.73616 -11.37605 -11.21473 -11.12381 -10.57338 -10.36269 -10.01837 -9.61016 -8.22869 -6.33481 -0.72403 0.07041 0.31417 1.15004 1.40388 1.40778 1.52148 1.80057 2.39759 2.57564 2.78967 3.10889 3.24762 3.46661 3.56826 3.72277 3.79136 3.84457 3.95520 3.96588 4.14984 4.35384 4.39603 4.42560 4.51590 4.67415 4.68682 4.79021 4.89042 4.98748 5.00440 5.08206 5.19069 5.25226 5.46042 5.48506 5.63967 5.78808 5.79945 6.11828 6.20179 6.71353 6.82349 7.35852 8.88546 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011189 B = 0.002235 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.944028 B =12527.108149 C =14401.491335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.552 4.552 8 H 0.059 0.941 9 C 0.031 3.969 10 C -0.107 4.107 11 C -0.611 4.611 12 S 2.634 3.366 13 O -0.994 6.994 14 O -0.990 6.990 15 N -1.102 6.102 16 C 0.074 3.926 17 C 0.154 3.846 18 H 0.133 0.867 19 O -0.561 6.561 20 C -0.119 4.119 21 C -0.096 4.096 22 C -0.118 4.118 23 C -0.048 4.048 24 Cl -0.078 7.078 25 C -0.117 4.117 26 C -0.102 4.102 27 H 0.265 0.735 28 H 0.004 0.996 29 H 0.003 0.997 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.427 0.573 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.387 0.613 38 H 0.158 0.842 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.583 -25.754 -6.687 27.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.590 4.590 8 H 0.078 0.922 9 C -0.008 4.008 10 C -0.147 4.147 11 C -0.741 4.741 12 S 2.729 3.271 13 O -0.984 6.984 14 O -0.979 6.979 15 N -0.864 5.864 16 C -0.052 4.052 17 C 0.093 3.907 18 H 0.150 0.850 19 O -0.368 6.368 20 C -0.120 4.120 21 C -0.114 4.114 22 C -0.136 4.136 23 C -0.074 4.074 24 Cl -0.049 7.049 25 C -0.135 4.135 26 C -0.120 4.120 27 H 0.074 0.926 28 H 0.022 0.978 29 H 0.021 0.979 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.164 0.836 33 H 0.165 0.835 34 H 0.264 0.736 35 H 0.103 0.897 36 H 0.116 0.884 37 H 0.237 0.763 38 H 0.175 0.825 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.095 -25.756 -6.397 27.023 hybrid contribution -0.471 1.202 -0.537 1.398 sum -5.565 -24.554 -6.934 26.114 Atomic orbital electron populations 1.70064 1.07587 1.27868 1.51423 1.25920 0.95813 1.03182 0.94631 0.85497 0.78716 0.78618 0.78559 1.19720 1.20577 1.18956 1.21752 0.93729 0.92580 1.50952 0.92226 1.18965 0.94033 0.91810 0.95946 1.21310 0.98683 0.92631 1.02038 1.30515 1.16746 1.13653 1.13219 1.04085 0.75052 0.75172 0.72749 1.93539 1.71877 1.86458 1.46521 1.93528 1.71262 1.86286 1.46864 1.55144 1.62070 1.40822 1.28410 1.22295 0.95552 0.98646 0.88730 1.20963 0.85756 0.86928 0.97050 0.84987 1.86624 1.39673 1.62838 1.47710 1.20642 0.95039 1.00454 0.95899 1.21274 0.92356 0.98170 0.99573 1.21302 1.01672 0.99434 0.91206 1.21217 0.92064 1.04405 0.89727 1.98380 1.68527 1.93639 1.44330 1.21238 0.91309 1.00401 1.00569 1.21155 1.01217 0.98091 0.91555 0.92645 0.97772 0.97871 0.91690 0.91539 0.83585 0.83456 0.73568 0.89746 0.88428 0.76263 0.82470 0.83653 0.83781 0.83177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.16 13.29 21.45 0.28 -54.87 16 2 C 0.00 0.16 5.46 84.66 0.46 0.62 16 3 Si 0.96 43.83 29.54 68.60 2.03 45.85 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.55 -31.05 9.11 25.60 0.23 -30.82 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.03 1.55 4.97 29.85 0.15 1.70 16 10 C -0.11 -4.21 5.16 30.60 0.16 -4.05 16 11 C -0.61 -16.77 6.07 71.98 0.44 -16.33 16 12 S 2.63 68.06 5.46 -56.49 -0.31 67.75 16 13 O -0.99 -32.59 18.08 -127.65 -2.31 -34.90 16 14 O -0.99 -31.33 17.49 -127.65 -2.23 -33.56 16 15 N -1.10 -18.23 5.75 -187.50 -1.08 -19.31 16 16 C 0.07 0.95 5.78 86.38 0.50 1.45 16 17 C 0.15 1.61 3.30 29.85 0.10 1.70 16 18 H 0.13 1.03 8.05 -2.39 -0.02 1.01 16 19 O -0.56 -7.20 13.00 -148.98 -1.94 -9.14 16 20 C -0.12 -1.31 5.01 -19.86 -0.10 -1.41 16 21 C -0.10 -1.00 9.68 22.27 0.22 -0.79 16 22 C -0.12 -1.46 9.83 22.29 0.22 -1.24 16 23 C -0.05 -0.68 6.32 22.32 0.14 -0.54 16 24 Cl -0.08 -1.16 28.96 -2.72 -0.08 -1.24 16 25 C -0.12 -1.49 9.83 22.29 0.22 -1.27 16 26 C -0.10 -1.14 9.33 22.27 0.21 -0.93 16 27 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 28 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 30 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.15 3.39 8.14 -2.39 -0.02 3.37 16 33 H 0.15 3.51 8.14 -2.39 -0.02 3.49 16 34 H 0.43 5.92 8.62 -96.75 -0.83 5.09 16 35 H 0.08 1.16 7.69 -2.38 -0.02 1.15 16 36 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.39 3.16 7.39 -74.06 -0.55 2.61 16 38 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 39 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 40 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 41 H 0.15 1.02 6.61 -2.91 -0.02 1.00 16 Total: -1.00 -77.39 378.31 -3.01 -80.39 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -0.32 Total: 10.93 kcal Atomic # 6 Polarization: -54.85 SS G_CDS: 2.94 Total: -51.91 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: -0.79 Total: -74.18 kcal Atomic # 8 Polarization: -71.12 SS G_CDS: -6.48 Total: -77.60 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 68.06 SS G_CDS: -0.31 Total: 67.75 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.24 kcal Total: -77.39 -3.01 -80.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159309660.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.879 kcal (2) G-P(sol) polarization free energy of solvation -77.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds