Wall clock time and date at job start Wed Apr 1 2020 04:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99928 * 2 1 4 4 H 1.48502 * 109.46961 * 269.99580 * 3 2 1 5 5 H 1.48498 * 109.47472 * 29.99768 * 3 2 1 6 6 H 1.48498 * 109.47223 * 150.00233 * 3 2 1 7 7 C 1.37882 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00140 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99699 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.46961 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.47016 * 179.97438 * 10 9 7 12 12 S 1.81394 * 109.47005 * 179.97438 * 11 10 9 13 13 O 1.42100 * 110.54608 * 68.37278 * 12 11 10 14 14 O 1.42104 * 110.54449 * 291.62209 * 12 11 10 15 15 N 1.65604 * 104.44958 * 180.02562 * 12 11 10 16 16 C 1.46498 * 120.00061 * 64.99668 * 15 12 11 17 17 C 1.53000 * 109.47267 * 165.00045 * 16 15 12 18 18 O 1.42898 * 109.46896 * 65.00001 * 17 16 15 19 19 C 1.35929 * 117.00101 * 180.02562 * 18 17 16 20 20 C 1.38701 * 120.05648 * 359.95940 * 19 18 17 21 21 C 1.38153 * 119.95853 * 180.02562 * 20 19 18 22 22 C 1.38285 * 120.07157 * 0.02562 * 21 20 19 23 23 C 1.38238 * 120.11971 * 0.02562 * 22 21 20 24 24 C 1.38255 * 120.04624 * 359.94924 * 23 22 21 25 25 Cl 1.73604 * 120.04140 * 180.02562 * 24 23 22 26 26 H 0.97000 * 119.99848 * 0.02562 * 1 2 3 27 27 H 1.08992 * 109.47151 * 59.99871 * 9 7 2 28 28 H 1.09008 * 109.46868 * 299.99962 * 9 7 2 29 29 H 1.09001 * 109.47760 * 59.99738 * 10 9 7 30 30 H 1.08999 * 109.47097 * 299.99490 * 10 9 7 31 31 H 1.08995 * 109.46750 * 60.00013 * 11 10 9 32 32 H 1.08999 * 109.46837 * 299.99729 * 11 10 9 33 33 H 0.97006 * 119.99917 * 244.99898 * 15 12 11 34 34 H 1.09000 * 109.47023 * 45.00033 * 16 15 12 35 35 H 1.08996 * 109.46883 * 285.00558 * 16 15 12 36 36 H 1.09004 * 109.47148 * 305.00299 * 17 16 15 37 37 H 1.08996 * 109.47021 * 184.99907 * 17 16 15 38 38 H 1.08003 * 120.02367 * 0.04181 * 20 19 18 39 39 H 1.08001 * 119.96476 * 180.29683 * 21 20 19 40 40 H 1.08006 * 119.93616 * 179.97438 * 22 21 20 41 41 H 1.08008 * 119.97717 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5516 -2.6366 0.0009 12 16 6.1562 -4.3468 0.0016 13 8 5.8600 -4.9809 -1.2351 14 8 5.8602 -4.9799 1.2388 15 7 7.8059 -4.2019 0.0022 16 6 8.4882 -3.6033 1.1521 17 6 9.9833 -3.9199 1.0795 18 8 10.5494 -3.2847 -0.0686 19 6 11.8795 -3.4669 -0.2818 20 6 12.6242 -4.2402 0.5964 21 6 13.9760 -4.4235 0.3782 22 6 14.5874 -3.8366 -0.7145 23 6 13.8483 -3.0644 -1.5911 24 6 12.4951 -2.8780 -1.3777 25 17 11.5669 -1.9088 -2.4791 26 1 -0.4850 0.8401 -0.0004 27 1 3.8745 -0.6801 0.8910 28 1 3.8752 -0.6804 -0.8889 29 1 3.6585 -3.1503 -0.8892 30 1 3.6579 -3.1506 0.8908 31 1 5.9149 -2.1228 0.8909 32 1 5.9148 -2.1227 -0.8890 33 1 8.3204 -4.5133 -0.7590 34 1 8.0745 -4.0129 2.0736 35 1 8.3443 -2.5230 1.1379 36 1 10.1232 -4.9982 1.0040 37 1 10.4768 -3.5514 1.9788 38 1 12.1476 -4.6989 1.4502 39 1 14.5550 -5.0296 1.0592 40 1 15.6444 -3.9810 -0.8828 41 1 14.3283 -2.6066 -2.4436 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160080114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:07 Heat of formation + Delta-G solvation = -129.605101 kcal Electronic energy + Delta-G solvation = -24971.655912 eV Core-core repulsion = 21003.550114 eV Total energy + Delta-G solvation = -3968.105798 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.17765 -38.74878 -38.18730 -37.30424 -37.06405 -36.50481 -36.18920 -34.25102 -31.82110 -31.20548 -30.15629 -29.57868 -25.39365 -24.80554 -23.45698 -22.60181 -22.25352 -20.43570 -19.44051 -18.97891 -18.61479 -17.83622 -17.40109 -17.19076 -16.91291 -16.79686 -16.24681 -16.08955 -15.62095 -15.49854 -14.96194 -14.85585 -14.84500 -14.19691 -14.06101 -13.93114 -13.66467 -13.51642 -13.22829 -13.19605 -13.12323 -12.83761 -12.71089 -12.61080 -12.54740 -12.44782 -12.04179 -11.92906 -11.84824 -11.75501 -11.64916 -11.41912 -11.30459 -10.78320 -10.40370 -9.87815 -9.18367 -8.30648 -6.36355 -0.73617 0.16646 0.34970 1.24476 1.36237 1.38195 1.49940 1.76684 2.11130 2.35428 2.66949 2.76373 3.04392 3.23213 3.62457 3.71680 3.84068 3.92619 4.00179 4.09346 4.20005 4.32946 4.34620 4.35946 4.45482 4.51400 4.62539 4.70682 4.81720 4.84972 4.92935 4.97934 5.12948 5.29081 5.34133 5.45586 5.47448 5.62010 5.71300 6.03884 6.24658 6.29766 6.71848 7.28124 8.86220 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.014414 B = 0.002298 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.145235 B =12181.130355 C =13326.211447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.000 4.000 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.238 1.238 7 C -0.543 4.543 8 H 0.030 0.970 9 C -0.006 4.006 10 C -0.104 4.104 11 C -0.612 4.612 12 S 2.629 3.371 13 O -0.997 6.997 14 O -0.987 6.987 15 N -1.111 6.111 16 C 0.105 3.895 17 C 0.048 3.952 18 O -0.318 6.318 19 C 0.123 3.877 20 C -0.203 4.203 21 C -0.075 4.075 22 C -0.148 4.148 23 C -0.082 4.082 24 C -0.096 4.096 25 Cl -0.075 7.075 26 H 0.267 0.733 27 H 0.034 0.966 28 H 0.028 0.972 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.157 0.843 32 H 0.150 0.850 33 H 0.424 0.576 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.245 -7.203 2.635 38.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.197 4.197 3 Si 0.777 3.223 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.161 1.161 7 C -0.581 4.581 8 H 0.049 0.951 9 C -0.044 4.044 10 C -0.143 4.143 11 C -0.743 4.743 12 S 2.724 3.276 13 O -0.987 6.987 14 O -0.977 6.977 15 N -0.873 5.873 16 C -0.020 4.020 17 C -0.028 4.028 18 O -0.232 6.232 19 C 0.077 3.923 20 C -0.222 4.222 21 C -0.093 4.093 22 C -0.166 4.166 23 C -0.100 4.100 24 C -0.123 4.123 25 Cl -0.046 7.046 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.175 0.825 32 H 0.169 0.831 33 H 0.260 0.740 34 H 0.133 0.867 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.125 0.875 38 H 0.175 0.825 39 H 0.176 0.824 40 H 0.175 0.825 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 36.302 -7.685 2.611 37.198 hybrid contribution -0.382 1.200 -0.569 1.382 sum 35.919 -6.485 2.042 36.557 Atomic orbital electron populations 1.70085 1.08469 1.28282 1.52356 1.26118 0.95724 1.03880 0.93955 0.85593 0.79734 0.77660 0.79270 1.19235 1.21034 1.16092 1.21560 0.92368 0.93277 1.50926 0.95133 1.19510 0.93686 0.93584 0.97655 1.21178 0.90565 1.00360 1.02205 1.30520 1.05425 1.24443 1.13890 1.04207 0.73236 0.77332 0.72789 1.93540 1.83857 1.74681 1.46670 1.93537 1.83974 1.73578 1.46629 1.55308 1.24930 1.78229 1.28793 1.21732 0.90887 1.00234 0.89150 1.23264 0.92668 0.98755 0.88132 1.86151 1.19511 1.70431 1.47111 1.18900 0.83849 0.95655 0.93927 1.21577 0.95985 1.03035 1.01573 1.21480 0.93755 0.97009 0.97036 1.21409 1.01605 0.98601 0.95020 1.21206 0.90358 0.97970 1.00513 1.20554 0.93434 1.03586 0.94742 1.98378 1.74016 1.70004 1.62241 0.92444 0.94772 0.95413 0.92115 0.91528 0.82466 0.83148 0.74002 0.86704 0.88937 0.89707 0.87519 0.82470 0.82387 0.82512 0.83373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.41 13.96 21.45 0.30 -60.11 16 2 C 0.00 0.00 5.47 84.66 0.46 0.46 16 3 Si 0.95 43.68 27.47 68.60 1.88 45.56 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.24 -9.73 6.54 99.48 0.65 -9.08 16 7 C -0.54 -31.70 9.66 25.60 0.25 -31.46 16 8 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 9 C -0.01 -0.27 4.04 29.85 0.12 -0.14 16 10 C -0.10 -3.97 5.16 30.60 0.16 -3.81 16 11 C -0.61 -15.88 6.07 71.99 0.44 -15.44 16 12 S 2.63 68.74 5.46 -56.49 -0.31 68.43 16 13 O -1.00 -33.87 18.08 -127.65 -2.31 -36.17 16 14 O -0.99 -31.06 17.49 -127.65 -2.23 -33.30 16 15 N -1.11 -19.59 5.85 -187.50 -1.10 -20.69 16 16 C 0.11 1.28 6.52 86.38 0.56 1.84 16 17 C 0.05 0.46 4.93 71.98 0.36 0.81 16 18 O -0.32 -4.97 9.40 -92.75 -0.87 -5.84 16 19 C 0.12 1.88 6.68 22.52 0.15 2.03 16 20 C -0.20 -2.02 9.04 22.36 0.20 -1.82 16 21 C -0.07 -0.56 10.04 22.26 0.22 -0.33 16 22 C -0.15 -1.21 10.04 22.28 0.22 -0.99 16 23 C -0.08 -0.99 9.83 22.27 0.22 -0.77 16 24 C -0.10 -1.61 6.33 22.41 0.14 -1.46 16 25 Cl -0.08 -1.47 28.51 -2.72 -0.08 -1.55 16 26 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 27 H 0.03 1.46 7.20 -2.39 -0.02 1.44 16 28 H 0.03 1.20 7.57 -2.38 -0.02 1.18 16 29 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.16 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.15 3.35 8.14 -2.39 -0.02 3.33 16 33 H 0.42 7.05 8.47 -96.74 -0.82 6.23 16 34 H 0.12 1.18 7.69 -2.39 -0.02 1.16 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 0.65 7.66 -2.39 -0.02 0.63 16 37 H 0.11 0.48 7.66 -2.39 -0.02 0.46 16 38 H 0.16 0.80 6.30 -2.91 -0.02 0.79 16 39 H 0.16 0.27 8.06 -2.91 -0.02 0.25 16 40 H 0.16 0.44 8.06 -2.91 -0.02 0.42 16 41 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -82.96 374.52 -1.03 -83.99 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.17 Total: 10.75 kcal Atomic # 6 Polarization: -54.58 SS G_CDS: 3.50 Total: -51.07 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -0.80 Total: -80.80 kcal Atomic # 8 Polarization: -69.90 SS G_CDS: -5.41 Total: -75.31 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.88 Total: 45.56 kcal Atomic # 16 Polarization: 68.74 SS G_CDS: -0.31 Total: 68.43 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.08 Total: -1.55 kcal Total: -82.96 -1.03 -83.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160080114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.611 kcal (2) G-P(sol) polarization free energy of solvation -82.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds