Wall clock time and date at job start Wed Apr 1 2020 04:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99662 * 2 1 4 4 H 1.48497 * 109.47212 * 270.00093 * 3 2 1 5 5 H 1.48501 * 109.46983 * 30.00242 * 3 2 1 6 6 H 1.48495 * 109.46842 * 149.99905 * 3 2 1 7 7 C 1.37867 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00352 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00176 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47289 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.47135 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.46986 * 179.97438 * 11 10 9 13 13 C 1.34774 * 119.99860 * 179.97438 * 12 11 10 14 14 O 1.21558 * 119.99922 * 0.02562 * 13 12 11 15 15 C 1.47841 * 120.00158 * 179.97438 * 13 12 11 16 16 C 1.39575 * 120.14653 * 180.02562 * 15 13 12 17 17 C 1.37960 * 119.85869 * 180.02562 * 16 15 13 18 18 C 1.38364 * 120.14068 * 0.02562 * 17 16 15 19 19 S 1.76193 * 119.85355 * 179.97438 * 18 17 16 20 20 O 1.42105 * 104.27847 * 206.07375 * 19 18 17 21 21 O 1.42101 * 104.27778 * 333.93045 * 19 18 17 22 22 C 1.81397 * 104.44909 * 90.00208 * 19 18 17 23 23 F 1.39895 * 109.47260 * 299.99710 * 22 19 18 24 24 F 1.39903 * 109.47318 * 60.00195 * 22 19 18 25 25 C 1.38365 * 120.29353 * 0.23442 * 18 17 16 26 26 C 1.37963 * 120.14041 * 359.48881 * 25 18 17 27 27 H 0.96997 * 120.00333 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47039 * 59.99827 * 9 7 2 29 29 H 1.09001 * 109.47096 * 300.00309 * 9 7 2 30 30 H 1.08993 * 109.47396 * 60.00151 * 10 9 7 31 31 H 1.08999 * 109.47040 * 299.99547 * 10 9 7 32 32 H 1.08993 * 109.47050 * 59.99701 * 11 10 9 33 33 H 1.08999 * 109.46592 * 299.99583 * 11 10 9 34 34 H 0.96996 * 119.99982 * 359.97438 * 12 11 10 35 35 H 1.08004 * 120.07456 * 0.02562 * 16 15 13 36 36 H 1.07994 * 119.93412 * 180.02562 * 17 16 15 37 37 H 1.09003 * 109.47352 * 180.02562 * 22 19 18 38 38 H 1.07989 * 119.92960 * 179.74255 * 25 18 17 39 39 H 1.08005 * 120.06989 * 180.25002 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4325 -6.1005 -0.0018 13 6 1.9833 -7.3712 -0.0019 14 8 0.7882 -7.5934 -0.0020 15 6 2.9440 -8.4949 -0.0031 16 6 2.4822 -9.8120 -0.0038 17 6 3.3840 -10.8561 -0.0043 18 6 4.7436 -10.5997 -0.0037 19 16 5.8886 -11.9389 -0.0038 20 8 7.0564 -11.4016 0.6021 21 8 5.1760 -13.0094 0.6007 22 6 6.1835 -12.2822 -1.7604 23 9 4.9762 -12.6274 -2.3772 24 9 6.7126 -11.1427 -2.3759 25 6 5.2082 -9.2964 0.0023 26 6 4.3169 -8.2433 -0.0028 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8897 30 1 2.8720 -3.6043 0.8894 31 1 2.8720 -3.6043 -0.8906 32 1 0.8541 -5.0446 -0.8913 33 1 0.8536 -5.0451 0.8886 34 1 3.3861 -5.9232 -0.0021 35 1 1.4211 -10.0135 -0.0038 36 1 3.0279 -11.8757 -0.0053 37 1 6.8888 -13.1078 -1.8559 38 1 6.2706 -9.1031 0.0070 39 1 4.6808 -7.2264 -0.0021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171509290.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:02 Heat of formation + Delta-G solvation = -170.123506 kcal Electronic energy + Delta-G solvation = -26844.190969 eV Core-core repulsion = 22322.531481 eV Total energy + Delta-G solvation = -4521.659488 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -49.94249 -48.09914 -40.50431 -38.68517 -38.10348 -36.97552 -35.62652 -33.54042 -32.31411 -31.64919 -30.95266 -28.31476 -27.04907 -24.89104 -23.46193 -22.80614 -21.03824 -20.51765 -20.18051 -19.22565 -18.90928 -18.37204 -18.23870 -17.38512 -16.76172 -16.35407 -15.87845 -15.53427 -15.36524 -15.16479 -14.98963 -14.89045 -14.50227 -14.36446 -14.34484 -14.17022 -14.10043 -13.52841 -13.34746 -13.25876 -13.06315 -12.94896 -12.34597 -11.96658 -11.85193 -11.78380 -11.73963 -11.28653 -10.94917 -10.81906 -10.65299 -10.19523 -9.95509 -9.94656 -9.60722 -9.49516 -9.18085 -8.98171 -8.41711 -6.06206 -4.09696 -1.32806 -0.10868 0.76762 1.60187 2.27378 2.71376 2.81742 3.05286 3.06884 3.27941 3.33937 3.34628 3.35738 3.37183 3.68735 4.16449 4.29180 4.39740 4.43255 4.71206 4.79413 5.02527 5.29688 5.33856 5.44618 5.47995 5.60111 5.65977 5.77566 6.04403 6.17704 6.27535 6.49074 6.69215 6.90520 7.44065 7.57565 7.69154 7.91736 8.07750 8.32533 8.96796 9.54876 11.05007 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.021866 B = 0.001809 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.247893 B =15470.444574 C =16048.345502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.122 4.122 11 C 0.114 3.886 12 N -0.714 5.714 13 C 0.543 3.457 14 O -0.529 6.529 15 C -0.061 4.061 16 C -0.083 4.083 17 C -0.019 4.019 18 C -0.645 4.645 19 S 2.476 3.524 20 O -0.886 6.886 21 O -0.887 6.887 22 C -0.209 4.209 23 F -0.163 7.163 24 F -0.162 7.162 25 C -0.018 4.018 26 C -0.109 4.109 27 H 0.262 0.738 28 H 0.019 0.981 29 H 0.020 0.980 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.399 0.601 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.152 0.848 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.662 -28.740 -2.374 32.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.160 4.160 11 C -0.008 4.008 12 N -0.365 5.365 13 C 0.328 3.672 14 O -0.407 6.407 15 C -0.065 4.065 16 C -0.103 4.103 17 C -0.039 4.039 18 C -0.735 4.735 19 S 2.647 3.353 20 O -0.883 6.883 21 O -0.884 6.884 22 C -0.344 4.344 23 F -0.144 7.144 24 F -0.144 7.144 25 C -0.037 4.037 26 C -0.129 4.129 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.235 0.765 35 H 0.169 0.831 36 H 0.169 0.831 37 H 0.174 0.826 38 H 0.169 0.831 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 13.996 -29.165 -1.786 32.399 hybrid contribution 0.546 1.539 -0.900 1.865 sum 14.543 -27.626 -2.686 31.335 Atomic orbital electron populations 1.69961 1.06065 1.26764 1.50423 1.25032 0.94871 0.99351 0.95219 0.86570 0.79790 0.83376 0.78115 1.20639 1.21185 1.19886 1.21182 0.92987 0.90891 1.51117 0.92623 1.19031 0.93820 0.90801 0.97732 1.21912 0.99860 0.93180 1.01018 1.21766 0.91781 0.84788 1.02434 1.46187 1.11201 1.05715 1.73411 1.18229 0.88089 0.83066 0.77765 1.90809 1.15873 1.84697 1.49271 1.20576 0.93857 0.94724 0.97296 1.21448 1.01434 0.90666 0.96772 1.20963 0.90482 1.00733 0.91673 1.30088 1.10184 1.13796 1.19478 1.07021 0.76094 0.76134 0.76096 1.93677 1.47997 1.78319 1.68338 1.93675 1.72282 1.54012 1.68404 1.33050 0.89360 0.94089 1.17904 1.93110 1.43694 1.92465 1.85144 1.93113 1.86228 1.49849 1.85192 1.20909 1.01012 0.90237 0.91586 1.21514 0.92024 1.00159 0.99195 0.92876 0.96216 0.96210 0.92575 0.92597 0.91305 0.91291 0.76547 0.83112 0.83077 0.82648 0.83067 0.83934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -14.30 9.11 -34.44 -0.31 -14.62 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.26 5.27 -26.73 -0.14 -2.40 16 11 C 0.11 1.89 5.67 -4.04 -0.02 1.87 16 12 N -0.71 -9.47 5.51 -61.25 -0.34 -9.81 16 13 C 0.54 7.60 7.77 -12.33 -0.10 7.50 16 14 O -0.53 -9.32 16.35 5.32 0.09 -9.23 16 15 C -0.06 -0.66 5.87 -104.97 -0.62 -1.28 16 16 C -0.08 -0.82 9.60 -39.18 -0.38 -1.19 16 17 C -0.02 -0.16 9.45 -39.64 -0.37 -0.53 16 18 C -0.65 -4.90 5.65 -39.49 -0.22 -5.12 16 19 S 2.48 14.61 5.39 -107.50 -0.58 14.03 16 20 O -0.89 -6.96 17.10 -57.54 -0.98 -7.95 16 21 O -0.89 -6.99 17.11 -57.54 -0.98 -7.97 16 22 C -0.21 -0.91 5.94 101.05 0.60 -0.31 16 23 F -0.16 -1.03 17.37 2.25 0.04 -0.99 16 24 F -0.16 -1.02 17.37 2.25 0.04 -0.98 16 25 C -0.02 -0.14 9.45 -39.64 -0.37 -0.51 16 26 C -0.11 -0.92 9.54 -39.18 -0.37 -1.29 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.40 4.07 6.51 -40.82 -0.27 3.80 16 35 H 0.15 1.43 7.65 -52.48 -0.40 1.03 16 36 H 0.15 0.87 7.56 -52.49 -0.40 0.47 16 37 H 0.16 0.02 8.14 -51.92 -0.42 -0.40 16 38 H 0.15 0.80 7.55 -52.49 -0.40 0.41 16 39 H 0.14 0.87 6.41 -52.48 -0.34 0.53 16 LS Contribution 362.83 15.07 5.47 5.47 Total: -1.00 -36.19 362.83 -8.38 -44.58 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -4.30 Total: -1.67 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -2.55 Total: -15.94 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.40 Total: -35.50 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -1.88 Total: -25.15 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.08 Total: -1.97 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 14.61 SS G_CDS: -0.58 Total: 14.03 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.19 -8.38 -44.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171509290.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.547 kcal (2) G-P(sol) polarization free energy of solvation -36.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds