Wall clock time and date at job start Wed Apr 1 2020 04:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99662 * 2 1 4 4 H 1.48497 * 109.47212 * 270.00093 * 3 2 1 5 5 H 1.48501 * 109.46983 * 30.00242 * 3 2 1 6 6 H 1.48495 * 109.46842 * 149.99905 * 3 2 1 7 7 C 1.37867 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00352 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00176 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47289 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.47135 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.46986 * 179.97438 * 11 10 9 13 13 C 1.34774 * 119.99860 * 179.97438 * 12 11 10 14 14 O 1.21558 * 119.99922 * 0.02562 * 13 12 11 15 15 C 1.47841 * 120.00158 * 179.97438 * 13 12 11 16 16 C 1.39575 * 120.14653 * 180.02562 * 15 13 12 17 17 C 1.37960 * 119.85869 * 180.02562 * 16 15 13 18 18 C 1.38364 * 120.14068 * 0.02562 * 17 16 15 19 19 S 1.76193 * 119.85355 * 179.97438 * 18 17 16 20 20 O 1.42105 * 104.27847 * 206.07375 * 19 18 17 21 21 O 1.42101 * 104.27778 * 333.93045 * 19 18 17 22 22 C 1.81397 * 104.44909 * 90.00208 * 19 18 17 23 23 F 1.39895 * 109.47260 * 299.99710 * 22 19 18 24 24 F 1.39903 * 109.47318 * 60.00195 * 22 19 18 25 25 C 1.38365 * 120.29353 * 0.23442 * 18 17 16 26 26 C 1.37963 * 120.14041 * 359.48881 * 25 18 17 27 27 H 0.96997 * 120.00333 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47039 * 59.99827 * 9 7 2 29 29 H 1.09001 * 109.47096 * 300.00309 * 9 7 2 30 30 H 1.08993 * 109.47396 * 60.00151 * 10 9 7 31 31 H 1.08999 * 109.47040 * 299.99547 * 10 9 7 32 32 H 1.08993 * 109.47050 * 59.99701 * 11 10 9 33 33 H 1.08999 * 109.46592 * 299.99583 * 11 10 9 34 34 H 0.96996 * 119.99982 * 359.97438 * 12 11 10 35 35 H 1.08004 * 120.07456 * 0.02562 * 16 15 13 36 36 H 1.07994 * 119.93412 * 180.02562 * 17 16 15 37 37 H 1.09003 * 109.47352 * 180.02562 * 22 19 18 38 38 H 1.07989 * 119.92960 * 179.74255 * 25 18 17 39 39 H 1.08005 * 120.06989 * 180.25002 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4325 -6.1005 -0.0018 13 6 1.9833 -7.3712 -0.0019 14 8 0.7882 -7.5934 -0.0020 15 6 2.9440 -8.4949 -0.0031 16 6 2.4822 -9.8120 -0.0038 17 6 3.3840 -10.8561 -0.0043 18 6 4.7436 -10.5997 -0.0037 19 16 5.8886 -11.9389 -0.0038 20 8 7.0564 -11.4016 0.6021 21 8 5.1760 -13.0094 0.6007 22 6 6.1835 -12.2822 -1.7604 23 9 4.9762 -12.6274 -2.3772 24 9 6.7126 -11.1427 -2.3759 25 6 5.2082 -9.2964 0.0023 26 6 4.3169 -8.2433 -0.0028 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8897 30 1 2.8720 -3.6043 0.8894 31 1 2.8720 -3.6043 -0.8906 32 1 0.8541 -5.0446 -0.8913 33 1 0.8536 -5.0451 0.8886 34 1 3.3861 -5.9232 -0.0021 35 1 1.4211 -10.0135 -0.0038 36 1 3.0279 -11.8757 -0.0053 37 1 6.8888 -13.1078 -1.8559 38 1 6.2706 -9.1031 0.0070 39 1 4.6808 -7.2264 -0.0021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171509290.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:01 Heat of formation + Delta-G solvation = -196.458576 kcal Electronic energy + Delta-G solvation = -26845.332943 eV Core-core repulsion = 22322.531481 eV Total energy + Delta-G solvation = -4522.801462 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.36866 -48.53549 -41.44466 -39.58029 -38.64464 -37.52016 -37.07484 -35.30737 -33.54798 -32.46906 -32.15316 -28.76474 -28.66063 -26.04698 -24.61210 -23.84521 -22.39138 -21.72227 -20.81625 -19.76442 -19.34363 -19.06161 -18.79722 -18.50088 -18.03504 -17.42501 -16.81903 -16.77738 -16.46899 -16.07715 -15.74507 -15.69337 -15.52424 -15.33703 -15.30818 -14.79032 -14.71611 -14.36823 -14.14477 -14.10420 -13.90108 -13.78158 -13.62262 -13.51994 -13.50484 -12.76213 -12.58911 -12.46449 -12.37509 -12.35534 -11.75394 -11.69723 -11.63469 -11.28712 -11.06947 -10.70692 -10.55707 -10.24624 -10.20522 -8.19886 -6.31277 -1.80504 -0.82336 0.12361 1.09574 1.42036 1.43101 1.44464 1.54000 1.95759 2.15521 2.36324 2.42040 2.55676 2.81725 3.06931 3.14142 3.22884 3.45240 3.59566 3.73183 4.07944 4.10313 4.16644 4.18338 4.40470 4.52235 4.76028 4.79610 4.81410 4.91589 4.92688 5.06972 5.15769 5.30248 5.51093 5.54460 5.69686 5.83730 6.21191 6.37714 6.86391 7.00779 7.38483 8.92133 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.021866 B = 0.001809 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.247893 B =15470.444574 C =16048.345502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.260 1.260 7 C -0.540 4.540 8 H 0.068 0.932 9 C 0.023 3.977 10 C -0.103 4.103 11 C 0.128 3.872 12 N -0.703 5.703 13 C 0.544 3.456 14 O -0.574 6.574 15 C -0.083 4.083 16 C -0.095 4.095 17 C -0.023 4.023 18 C -0.650 4.650 19 S 2.501 3.499 20 O -0.904 6.904 21 O -0.908 6.908 22 C -0.199 4.199 23 F -0.172 7.172 24 F -0.170 7.170 25 C -0.022 4.022 26 C -0.105 4.105 27 H 0.263 0.737 28 H -0.007 1.007 29 H -0.008 1.008 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.417 0.583 35 H 0.144 0.856 36 H 0.170 0.830 37 H 0.209 0.791 38 H 0.177 0.823 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.064 -29.702 -2.848 34.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.184 1.184 7 C -0.578 4.578 8 H 0.086 0.914 9 C -0.015 4.015 10 C -0.140 4.140 11 C 0.004 3.996 12 N -0.355 5.355 13 C 0.332 3.668 14 O -0.455 6.455 15 C -0.086 4.086 16 C -0.115 4.115 17 C -0.042 4.042 18 C -0.739 4.739 19 S 2.672 3.328 20 O -0.902 6.902 21 O -0.905 6.905 22 C -0.337 4.337 23 F -0.153 7.153 24 F -0.152 7.152 25 C -0.041 4.041 26 C -0.124 4.124 27 H 0.072 0.928 28 H 0.011 0.989 29 H 0.011 0.989 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.255 0.745 35 H 0.162 0.838 36 H 0.188 0.812 37 H 0.225 0.775 38 H 0.194 0.806 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 17.430 -30.116 -2.232 34.868 hybrid contribution -0.473 1.723 -0.788 1.953 sum 16.956 -28.393 -3.021 33.209 Atomic orbital electron populations 1.70110 1.07936 1.27780 1.51724 1.26026 0.95749 1.03582 0.94848 0.85418 0.78698 0.78312 0.78432 1.19849 1.21173 1.18370 1.21678 0.93788 0.91952 1.50358 0.91422 1.18950 0.94471 0.92955 0.95140 1.21614 0.98493 0.91537 1.02401 1.21341 0.91880 0.85191 1.01182 1.45913 1.11594 1.04808 1.73193 1.18709 0.88071 0.83681 0.76350 1.90781 1.17999 1.85344 1.51381 1.20343 0.94240 0.93655 1.00373 1.21517 1.01662 0.91004 0.97295 1.21174 0.90595 1.01144 0.91288 1.30513 1.10489 1.14907 1.17961 1.06360 0.74912 0.74900 0.76616 1.93655 1.48206 1.78455 1.69850 1.93651 1.72597 1.54252 1.69989 1.33035 0.89971 0.95292 1.15394 1.93101 1.44617 1.92520 1.85089 1.93104 1.86285 1.50656 1.85121 1.21276 1.02167 0.89905 0.90758 1.21764 0.90883 1.01750 0.98018 0.92843 0.98902 0.98920 0.91110 0.91071 0.92708 0.92740 0.74478 0.83799 0.81210 0.77492 0.80569 0.81662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.63 13.29 21.44 0.28 -56.35 16 2 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 3 Si 0.97 43.25 29.54 68.60 2.03 45.27 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 7 C -0.54 -29.53 9.11 25.60 0.23 -29.29 16 8 H 0.07 3.46 7.74 -2.91 -0.02 3.43 16 9 C 0.02 1.14 4.97 29.85 0.15 1.29 16 10 C -0.10 -3.76 5.27 30.60 0.16 -3.60 16 11 C 0.13 4.30 5.67 86.38 0.49 4.79 16 12 N -0.70 -18.30 5.51 -465.98 -2.57 -20.87 16 13 C 0.54 15.46 7.77 86.79 0.67 16.14 16 14 O -0.57 -21.20 16.35 -3.90 -0.06 -21.26 16 15 C -0.08 -1.77 5.87 -20.09 -0.12 -1.88 16 16 C -0.09 -1.88 9.60 22.53 0.22 -1.66 16 17 C -0.02 -0.35 9.45 22.23 0.21 -0.14 16 18 C -0.65 -8.67 5.65 22.33 0.13 -8.54 16 19 S 2.50 23.51 5.39 -56.49 -0.30 23.21 16 20 O -0.90 -11.98 17.10 -127.65 -2.18 -14.16 16 21 O -0.91 -12.57 17.11 -127.65 -2.18 -14.75 16 22 C -0.20 -1.07 5.94 113.37 0.67 -0.40 16 23 F -0.17 -1.70 17.37 44.97 0.78 -0.92 16 24 F -0.17 -1.60 17.37 44.97 0.78 -0.82 16 25 C -0.02 -0.29 9.45 22.23 0.21 -0.08 16 26 C -0.10 -1.57 9.54 22.53 0.21 -1.36 16 27 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 28 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 29 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 30 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.42 7.73 6.51 -92.71 -0.60 7.12 16 35 H 0.14 2.92 7.65 -2.91 -0.02 2.90 16 36 H 0.17 1.78 7.56 -2.91 -0.02 1.76 16 37 H 0.21 -0.93 8.14 -2.39 -0.02 -0.94 16 38 H 0.18 1.31 7.55 -2.92 -0.02 1.29 16 39 H 0.17 1.56 6.41 -2.91 -0.02 1.54 16 Total: -1.00 -80.09 362.83 0.78 -79.31 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 0.50 Total: 5.86 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 3.70 Total: -24.52 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -2.28 Total: -77.22 kcal Atomic # 8 Polarization: -45.74 SS G_CDS: -4.43 Total: -50.17 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 1.56 Total: -1.74 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: 23.51 SS G_CDS: -0.30 Total: 23.21 kcal Total: -80.09 0.78 -79.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171509290.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.148 kcal (2) G-P(sol) polarization free energy of solvation -80.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds