Wall clock time and date at job start Wed Apr 1 2020 04:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42100 * 110.54113 * 2 1 4 4 O 1.42100 * 110.54215 * 136.74760 * 2 1 3 5 5 C 1.76203 * 104.44838 * 248.37328 * 2 1 3 6 6 C 1.38234 * 119.99534 * 269.72613 * 5 2 1 7 7 C 1.38244 * 119.99168 * 179.74799 * 6 5 2 8 8 C 1.38233 * 119.99960 * 0.52518 * 7 6 5 9 9 S 1.76205 * 119.99573 * 179.76841 * 8 7 6 10 10 O 1.42092 * 106.40436 * 23.52271 * 9 8 7 11 11 O 1.42102 * 106.39637 * 156.44198 * 9 8 7 12 12 N 1.65600 * 107.21742 * 269.97825 * 9 8 7 13 13 C 1.46502 * 119.99849 * 65.00628 * 12 9 8 14 14 C 1.53002 * 109.46969 * 164.99525 * 13 12 9 15 15 C 1.53001 * 109.46747 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46870 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00114 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99881 * 180.02562 * 16 15 14 19 19 N 1.31505 * 120.00259 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99787 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47136 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47011 * 119.99918 * 20 18 16 23 23 H 1.48503 * 109.47121 * 239.99965 * 20 18 16 24 24 C 1.38228 * 120.00308 * 359.75264 * 8 7 6 25 25 C 1.38228 * 119.99649 * 90.00553 * 5 2 1 26 26 H 1.09002 * 109.47124 * 51.62553 * 1 2 3 27 27 H 1.09001 * 109.46975 * 291.62674 * 1 2 3 28 28 H 1.09004 * 109.47147 * 171.62637 * 1 2 3 29 29 H 1.07997 * 120.00344 * 359.97438 * 6 5 2 30 30 H 1.07999 * 119.99259 * 180.29507 * 7 6 5 31 31 H 0.96996 * 120.00296 * 244.99656 * 12 9 8 32 32 H 1.08994 * 109.46988 * 284.99748 * 13 12 9 33 33 H 1.08999 * 109.47110 * 44.99446 * 13 12 9 34 34 H 1.08997 * 109.47002 * 299.99694 * 14 13 12 35 35 H 1.09002 * 109.46816 * 60.00234 * 14 13 12 36 36 H 1.08997 * 109.47247 * 299.99700 * 15 14 13 37 37 H 1.08999 * 109.47095 * 60.00066 * 15 14 13 38 38 H 0.97007 * 120.00250 * 179.97438 * 19 18 16 39 39 H 1.08004 * 120.00119 * 179.97438 * 24 8 7 40 40 H 1.07998 * 120.00592 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 0.9118 5 6 2.2537 -0.6289 -1.5862 6 6 2.4317 -1.9879 -1.7657 7 6 2.7715 -2.4817 -3.0114 8 6 2.9439 -1.6155 -4.0748 9 16 3.3830 -2.2445 -5.6611 10 8 2.9560 -3.5994 -5.6878 11 8 2.9555 -1.2760 -6.6090 12 7 5.0371 -2.2738 -5.7361 13 6 5.7950 -3.1584 -4.8476 14 6 7.2332 -3.2805 -5.3551 15 6 8.0248 -4.2038 -4.4268 16 6 9.4416 -4.3236 -4.9263 17 1 9.7467 -3.7944 -5.8170 18 6 10.3480 -5.1095 -4.2468 19 7 9.9764 -5.7542 -3.1625 20 14 12.1040 -5.2585 -4.8664 21 1 12.2665 -4.4405 -6.0950 22 1 13.0405 -4.7726 -3.8214 23 1 12.4011 -6.6805 -5.1749 24 6 2.7715 -0.2560 -3.8938 25 6 2.4262 0.2374 -2.6495 26 1 -0.3633 0.6380 -0.8057 27 1 -0.3633 0.3788 0.9553 28 1 -0.3634 -1.0167 -0.1497 29 1 2.3017 -2.6641 -0.9338 30 1 2.9059 -3.5439 -3.1528 31 1 5.5041 -1.7055 -6.3683 32 1 5.7993 -2.7439 -3.8396 33 1 5.3299 -4.1441 -4.8331 34 1 7.2288 -3.6951 -6.3632 35 1 7.6982 -2.2948 -5.3696 36 1 8.0292 -3.7888 -3.4189 37 1 7.5599 -5.1895 -4.4119 38 1 10.6140 -6.3075 -2.6846 39 1 2.9067 0.4208 -4.7246 40 1 2.2912 1.2995 -2.5082 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171713990.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:26 Heat of formation + Delta-G solvation = -122.786970 kcal Electronic energy + Delta-G solvation = -25457.353918 eV Core-core repulsion = 21491.587483 eV Total energy + Delta-G solvation = -3965.766435 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.62907 -37.57317 -37.41750 -36.40052 -36.09870 -36.00320 -33.29335 -32.13599 -31.59401 -30.92839 -30.04994 -26.45988 -24.32069 -23.49400 -23.03929 -20.68021 -19.68906 -19.51750 -18.60255 -17.77679 -17.26398 -16.75579 -16.67644 -16.46200 -15.88428 -15.30905 -15.24846 -14.75658 -14.57497 -14.44336 -14.17753 -14.03819 -13.77221 -13.74945 -13.54030 -12.68635 -12.53064 -12.44932 -12.39312 -12.30674 -12.20878 -12.09278 -11.85207 -11.80239 -11.62480 -11.51446 -11.00188 -10.92348 -10.81298 -10.55409 -10.26186 -9.98759 -9.54892 -9.51628 -9.36551 -9.13138 -8.39952 -6.04640 -4.07416 -0.53241 -0.10649 0.27047 0.78012 2.30175 2.60797 2.98416 3.29003 3.36803 3.40404 3.42030 3.57062 3.59525 3.99849 4.22561 4.25127 4.39436 4.42598 4.52066 4.76904 4.94970 5.08191 5.09976 5.21902 5.31680 5.35153 5.41377 5.47662 5.56128 5.56900 5.81588 5.99781 6.26141 6.50014 6.68598 6.87859 7.03860 7.59457 7.71223 7.93775 8.35260 8.99234 9.57188 11.06657 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.011403 B = 0.002655 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.915260 B =10543.031400 C =12272.648133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 2.497 3.503 3 O -0.932 6.932 4 O -0.928 6.928 5 C -0.615 4.615 6 C -0.044 4.044 7 C -0.038 4.038 8 C -0.627 4.627 9 S 2.691 3.309 10 O -0.949 6.949 11 O -0.960 6.960 12 N -1.109 6.109 13 C 0.109 3.891 14 C -0.115 4.115 15 C 0.021 3.979 16 C -0.522 4.522 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.040 4.040 25 C -0.048 4.048 26 H 0.133 0.867 27 H 0.135 0.865 28 H 0.134 0.866 29 H 0.153 0.847 30 H 0.154 0.846 31 H 0.420 0.580 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.019 0.981 37 H 0.020 0.980 38 H 0.261 0.739 39 H 0.151 0.849 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.996 12.742 3.753 26.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.799 4.799 2 S 2.675 3.325 3 O -0.929 6.929 4 O -0.926 6.926 5 C -0.701 4.701 6 C -0.064 4.064 7 C -0.058 4.058 8 C -0.712 4.712 9 S 2.778 3.222 10 O -0.939 6.939 11 O -0.950 6.950 12 N -0.871 5.871 13 C -0.016 4.016 14 C -0.155 4.155 15 C -0.017 4.017 16 C -0.560 4.560 17 H 0.075 0.925 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.060 4.060 25 C -0.067 4.067 26 H 0.152 0.848 27 H 0.153 0.847 28 H 0.153 0.847 29 H 0.171 0.829 30 H 0.172 0.828 31 H 0.255 0.745 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.037 0.963 37 H 0.039 0.961 38 H 0.070 0.930 39 H 0.168 0.832 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -23.051 12.499 4.026 26.529 hybrid contribution 0.926 0.098 -0.477 1.046 sum -22.125 12.597 3.549 25.706 Atomic orbital electron populations 1.30213 1.25153 1.12354 1.12133 1.05426 0.78102 0.74803 0.74126 1.93610 1.77314 1.36229 1.85726 1.93627 1.77214 1.61491 1.60223 1.30994 1.13643 1.03217 1.22208 1.21139 0.93717 0.93410 0.98087 1.21199 0.92750 1.00395 0.91470 1.31585 1.12163 1.03409 1.24016 1.02099 0.72852 0.73976 0.73272 1.93613 1.80540 1.33829 1.85907 1.93590 1.80582 1.62428 1.58437 1.55468 1.25071 1.55567 1.51039 1.21682 0.95104 0.92710 0.92059 1.21855 0.91050 1.01502 1.01049 1.19086 0.94270 0.94096 0.94249 1.21234 0.95308 1.28479 1.11012 0.92549 1.25023 0.98873 0.95586 0.94963 1.69962 1.35034 1.30625 1.17667 0.86528 0.84762 0.77837 0.78812 1.19760 1.21012 1.20981 1.21085 0.93363 0.93393 0.98144 1.21083 0.94269 0.99873 0.91502 0.84820 0.84678 0.84737 0.82894 0.82834 0.74489 0.92021 0.90276 0.92246 0.92498 0.96278 0.96133 0.92960 0.83176 0.83118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.62 10.80 101.05 1.09 -0.53 16 2 S 2.50 17.57 5.80 -107.50 -0.62 16.95 16 3 O -0.93 -9.45 17.13 -57.54 -0.99 -10.44 16 4 O -0.93 -9.82 17.12 -57.54 -0.98 -10.80 16 5 C -0.62 -5.34 5.66 -39.59 -0.22 -5.57 16 6 C -0.04 -0.41 9.47 -39.58 -0.37 -0.79 16 7 C -0.04 -0.41 9.52 -39.58 -0.38 -0.78 16 8 C -0.63 -6.95 5.95 -39.59 -0.24 -7.18 16 9 S 2.69 33.24 5.74 -107.50 -0.62 32.62 16 10 O -0.95 -14.26 16.75 -57.17 -0.96 -15.22 16 11 O -0.96 -13.22 17.28 -57.17 -0.99 -14.21 16 12 N -1.11 -13.76 6.00 -10.61 -0.06 -13.82 16 13 C 0.11 1.65 6.22 -4.04 -0.03 1.63 16 14 C -0.12 -2.15 5.29 -26.73 -0.14 -2.29 16 15 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 16 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 20 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C -0.04 -0.39 9.52 -39.58 -0.38 -0.77 16 25 C -0.05 -0.42 9.47 -39.58 -0.37 -0.79 16 26 H 0.13 0.14 8.14 -51.92 -0.42 -0.29 16 27 H 0.13 0.15 8.14 -51.92 -0.42 -0.27 16 28 H 0.13 0.16 8.14 -51.92 -0.42 -0.26 16 29 H 0.15 1.11 7.56 -52.49 -0.40 0.71 16 30 H 0.15 1.46 7.62 -52.49 -0.40 1.06 16 31 H 0.42 4.47 8.65 -34.47 -0.30 4.17 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.20 7.75 -51.93 -0.40 0.80 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.15 1.19 7.62 -52.48 -0.40 0.79 16 40 H 0.15 0.94 7.57 -52.49 -0.40 0.54 16 LS Contribution 369.37 15.07 5.57 5.57 Total: -1.00 -39.24 369.37 -10.75 -49.98 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -5.22 Total: -1.49 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: -1.59 Total: -29.83 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.67 Total: -39.44 kcal Atomic # 8 Polarization: -46.75 SS G_CDS: -3.92 Total: -50.67 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 50.81 SS G_CDS: -1.24 Total: 49.57 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -39.24 -10.75 -49.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171713990.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.807 kcal (2) G-P(sol) polarization free energy of solvation -39.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds