Wall clock time and date at job start Wed Apr 1 2020 04:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42100 * 110.54113 * 2 1 4 4 O 1.42100 * 110.54215 * 136.74760 * 2 1 3 5 5 C 1.76203 * 104.44838 * 248.37328 * 2 1 3 6 6 C 1.38234 * 119.99534 * 269.72613 * 5 2 1 7 7 C 1.38244 * 119.99168 * 179.74799 * 6 5 2 8 8 C 1.38233 * 119.99960 * 0.52518 * 7 6 5 9 9 S 1.76205 * 119.99573 * 179.76841 * 8 7 6 10 10 O 1.42092 * 106.40436 * 23.52271 * 9 8 7 11 11 O 1.42102 * 106.39637 * 156.44198 * 9 8 7 12 12 N 1.65600 * 107.21742 * 269.97825 * 9 8 7 13 13 C 1.46502 * 119.99849 * 65.00628 * 12 9 8 14 14 C 1.53002 * 109.46969 * 164.99525 * 13 12 9 15 15 C 1.53001 * 109.46747 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46870 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00114 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99881 * 180.02562 * 16 15 14 19 19 N 1.31505 * 120.00259 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99787 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47136 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47011 * 119.99918 * 20 18 16 23 23 H 1.48503 * 109.47121 * 239.99965 * 20 18 16 24 24 C 1.38228 * 120.00308 * 359.75264 * 8 7 6 25 25 C 1.38228 * 119.99649 * 90.00553 * 5 2 1 26 26 H 1.09002 * 109.47124 * 51.62553 * 1 2 3 27 27 H 1.09001 * 109.46975 * 291.62674 * 1 2 3 28 28 H 1.09004 * 109.47147 * 171.62637 * 1 2 3 29 29 H 1.07997 * 120.00344 * 359.97438 * 6 5 2 30 30 H 1.07999 * 119.99259 * 180.29507 * 7 6 5 31 31 H 0.96996 * 120.00296 * 244.99656 * 12 9 8 32 32 H 1.08994 * 109.46988 * 284.99748 * 13 12 9 33 33 H 1.08999 * 109.47110 * 44.99446 * 13 12 9 34 34 H 1.08997 * 109.47002 * 299.99694 * 14 13 12 35 35 H 1.09002 * 109.46816 * 60.00234 * 14 13 12 36 36 H 1.08997 * 109.47247 * 299.99700 * 15 14 13 37 37 H 1.08999 * 109.47095 * 60.00066 * 15 14 13 38 38 H 0.97007 * 120.00250 * 179.97438 * 19 18 16 39 39 H 1.08004 * 120.00119 * 179.97438 * 24 8 7 40 40 H 1.07998 * 120.00592 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 0.9118 5 6 2.2537 -0.6289 -1.5862 6 6 2.4317 -1.9879 -1.7657 7 6 2.7715 -2.4817 -3.0114 8 6 2.9439 -1.6155 -4.0748 9 16 3.3830 -2.2445 -5.6611 10 8 2.9560 -3.5994 -5.6878 11 8 2.9555 -1.2760 -6.6090 12 7 5.0371 -2.2738 -5.7361 13 6 5.7950 -3.1584 -4.8476 14 6 7.2332 -3.2805 -5.3551 15 6 8.0248 -4.2038 -4.4268 16 6 9.4416 -4.3236 -4.9263 17 1 9.7467 -3.7944 -5.8170 18 6 10.3480 -5.1095 -4.2468 19 7 9.9764 -5.7542 -3.1625 20 14 12.1040 -5.2585 -4.8664 21 1 12.2665 -4.4405 -6.0950 22 1 13.0405 -4.7726 -3.8214 23 1 12.4011 -6.6805 -5.1749 24 6 2.7715 -0.2560 -3.8938 25 6 2.4262 0.2374 -2.6495 26 1 -0.3633 0.6380 -0.8057 27 1 -0.3633 0.3788 0.9553 28 1 -0.3634 -1.0167 -0.1497 29 1 2.3017 -2.6641 -0.9338 30 1 2.9059 -3.5439 -3.1528 31 1 5.5041 -1.7055 -6.3683 32 1 5.7993 -2.7439 -3.8396 33 1 5.3299 -4.1441 -4.8331 34 1 7.2288 -3.6951 -6.3632 35 1 7.6982 -2.2948 -5.3696 36 1 8.0292 -3.7888 -3.4189 37 1 7.5599 -5.1895 -4.4119 38 1 10.6140 -6.3075 -2.6846 39 1 2.9067 0.4208 -4.7246 40 1 2.2912 1.2995 -2.5082 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171713990.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:25 Heat of formation + Delta-G solvation = -154.369692 kcal Electronic energy + Delta-G solvation = -25458.723448 eV Core-core repulsion = 21491.587483 eV Total energy + Delta-G solvation = -3967.135965 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.35005 -38.50747 -38.22743 -37.43598 -37.10303 -37.05845 -35.19116 -32.87593 -32.66254 -32.30987 -30.30851 -28.23681 -25.07334 -24.82858 -24.16251 -22.27113 -20.66707 -20.17749 -19.39539 -18.67118 -18.57321 -18.16311 -17.48577 -17.20910 -16.91197 -16.48387 -16.17319 -16.07489 -15.93701 -15.59067 -14.89114 -14.74114 -14.45601 -14.32272 -14.09376 -13.96351 -13.94745 -13.78269 -13.36505 -13.28879 -13.23777 -13.20835 -13.10695 -12.82690 -12.61806 -12.56113 -12.54708 -12.29986 -12.11053 -11.76388 -11.62337 -11.41103 -11.15383 -10.98922 -10.55189 -10.51768 -10.26830 -8.19078 -6.29212 -1.09668 -0.84288 -0.67683 0.05067 1.40992 1.41837 1.54258 1.71096 1.78753 2.10614 2.42109 2.58938 2.93901 3.05874 3.13098 3.15075 3.61076 3.72751 3.98591 4.06875 4.09019 4.09961 4.23725 4.31320 4.39065 4.45805 4.62806 4.64784 4.73818 4.75374 4.85457 4.95556 4.96118 5.17077 5.21175 5.54417 5.55128 5.75252 5.86913 6.00821 6.25667 6.88191 7.40013 8.92806 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.011403 B = 0.002655 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.915260 B =10543.031400 C =12272.648133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.619 4.619 2 S 2.502 3.498 3 O -0.968 6.968 4 O -0.972 6.972 5 C -0.615 4.615 6 C -0.055 4.055 7 C -0.056 4.056 8 C -0.638 4.638 9 S 2.712 3.288 10 O -0.979 6.979 11 O -0.973 6.973 12 N -1.105 6.105 13 C 0.118 3.882 14 C -0.105 4.105 15 C 0.021 3.979 16 C -0.541 4.541 17 H 0.062 0.938 18 C -0.001 4.001 19 N -0.932 5.932 20 Si 0.962 3.038 21 H -0.262 1.262 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.048 4.048 25 C -0.052 4.052 26 H 0.158 0.842 27 H 0.158 0.842 28 H 0.155 0.845 29 H 0.169 0.831 30 H 0.156 0.844 31 H 0.429 0.571 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.067 0.933 36 H -0.001 1.001 37 H -0.003 1.003 38 H 0.263 0.737 39 H 0.167 0.833 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.206 14.237 3.578 28.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.774 4.774 2 S 2.683 3.317 3 O -0.965 6.965 4 O -0.969 6.969 5 C -0.699 4.699 6 C -0.074 4.074 7 C -0.075 4.075 8 C -0.725 4.725 9 S 2.802 3.198 10 O -0.969 6.969 11 O -0.963 6.963 12 N -0.867 5.867 13 C -0.008 4.008 14 C -0.144 4.144 15 C -0.017 4.017 16 C -0.579 4.579 17 H 0.080 0.920 18 C -0.199 4.199 19 N -0.572 5.572 20 Si 0.787 3.213 21 H -0.186 1.186 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.068 4.068 25 C -0.071 4.071 26 H 0.176 0.824 27 H 0.177 0.823 28 H 0.173 0.827 29 H 0.186 0.814 30 H 0.174 0.826 31 H 0.266 0.734 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.017 0.983 37 H 0.016 0.984 38 H 0.072 0.928 39 H 0.184 0.816 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -24.203 13.993 3.786 28.212 hybrid contribution 1.165 -0.313 -0.347 1.255 sum -23.038 13.680 3.439 27.013 Atomic orbital electron populations 1.30016 1.18148 1.14632 1.14561 1.05245 0.80543 0.73163 0.72725 1.93560 1.79859 1.37347 1.85781 1.93573 1.79888 1.62307 1.61127 1.31305 1.12647 1.02933 1.22967 1.21394 0.93663 0.94264 0.98078 1.21380 0.93406 1.00710 0.92052 1.31270 1.13994 1.04231 1.22979 1.01228 0.72184 0.73025 0.73358 1.93572 1.80934 1.35719 1.86671 1.93567 1.80609 1.62556 1.59565 1.55249 1.25065 1.55366 1.51045 1.21397 0.93244 0.93361 0.92753 1.21619 0.92491 1.00505 0.99754 1.18998 0.94104 0.94133 0.94491 1.21724 0.96805 1.28251 1.11133 0.91997 1.25947 1.03457 0.95319 0.95149 1.70089 1.36619 1.31522 1.19013 0.85438 0.79290 0.77969 0.78571 1.18570 1.20569 1.20569 1.21397 0.93028 0.93056 0.99297 1.21449 0.93491 1.01210 0.90992 0.82358 0.82347 0.82661 0.81374 0.82628 0.73422 0.91153 0.90616 0.91943 0.91464 0.98309 0.98436 0.92824 0.81559 0.80671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -0.61 10.80 113.37 1.22 0.62 16 2 S 2.50 31.54 5.80 -56.49 -0.33 31.22 16 3 O -0.97 -18.65 17.13 -127.65 -2.19 -20.84 16 4 O -0.97 -20.16 17.12 -127.65 -2.19 -22.35 16 5 C -0.61 -9.86 5.66 22.27 0.13 -9.74 16 6 C -0.05 -0.99 9.47 22.27 0.21 -0.78 16 7 C -0.06 -1.17 9.52 22.27 0.21 -0.96 16 8 C -0.64 -13.74 5.95 22.27 0.13 -13.60 16 9 S 2.71 65.97 5.74 -56.49 -0.32 65.64 16 10 O -0.98 -29.61 16.75 -128.00 -2.14 -31.75 16 11 O -0.97 -25.96 17.28 -128.00 -2.21 -28.17 16 12 N -1.10 -26.72 6.00 -187.49 -1.12 -27.84 16 13 C 0.12 3.56 6.22 86.38 0.54 4.10 16 14 C -0.10 -3.89 5.29 30.60 0.16 -3.72 16 15 C 0.02 1.04 4.97 29.85 0.15 1.19 16 16 C -0.54 -29.94 9.11 25.60 0.23 -29.71 16 17 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 18 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 19 N -0.93 -56.02 13.29 21.45 0.28 -55.74 16 20 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 21 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 24 C -0.05 -0.87 9.52 22.27 0.21 -0.66 16 25 C -0.05 -0.82 9.47 22.27 0.21 -0.61 16 26 H 0.16 -0.46 8.14 -2.39 -0.02 -0.48 16 27 H 0.16 -0.38 8.14 -2.39 -0.02 -0.40 16 28 H 0.16 -0.31 8.14 -2.39 -0.02 -0.33 16 29 H 0.17 2.36 7.56 -2.91 -0.02 2.34 16 30 H 0.16 3.05 7.62 -2.91 -0.02 3.03 16 31 H 0.43 8.68 8.65 -96.75 -0.84 7.84 16 32 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.08 2.34 7.75 -2.39 -0.02 2.32 16 34 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 37 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 38 H 0.26 14.86 8.31 -92.70 -0.77 14.09 16 39 H 0.17 2.35 7.62 -2.91 -0.02 2.33 16 40 H 0.18 1.78 7.57 -2.91 -0.02 1.76 16 Total: -1.00 -85.49 369.37 -4.09 -89.59 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 0.23 Total: 7.86 kcal Atomic # 6 Polarization: -57.33 SS G_CDS: 3.87 Total: -53.46 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -0.84 Total: -83.58 kcal Atomic # 8 Polarization: -94.39 SS G_CDS: -8.73 Total: -103.11 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 97.51 SS G_CDS: -0.65 Total: 96.86 kcal Total: -85.49 -4.09 -89.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171713990.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.783 kcal (2) G-P(sol) polarization free energy of solvation -85.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds