Wall clock time and date at job start Wed Apr 1 2020 04:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42102 * 110.54453 * 2 1 4 4 O 1.42100 * 110.54191 * 223.24494 * 2 1 3 5 5 C 1.76204 * 104.44592 * 111.62286 * 2 1 3 6 6 C 1.38263 * 119.99757 * 116.54170 * 5 2 1 7 7 C 1.38211 * 119.99988 * 179.97438 * 6 5 2 8 8 C 1.38259 * 119.99676 * 359.73571 * 7 6 5 9 9 C 1.38217 * 120.00248 * 0.51971 * 8 7 6 10 10 C 1.38211 * 120.00042 * 296.51594 * 5 2 1 11 11 S 1.76191 * 119.99912 * 0.02562 * 10 5 2 12 12 O 1.42099 * 106.40529 * 307.20321 * 11 10 5 13 13 O 1.42097 * 106.40376 * 80.12338 * 11 10 5 14 14 N 1.65607 * 107.21806 * 193.66547 * 11 10 5 15 15 C 1.46490 * 119.99923 * 65.28274 * 14 11 10 16 16 C 1.53005 * 109.47064 * 163.38904 * 15 14 11 17 17 C 1.53001 * 109.47169 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.47284 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99536 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99980 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00322 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99616 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47379 * 60.00066 * 22 20 18 24 24 H 1.48504 * 109.46883 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47237 * 299.99478 * 22 20 18 26 26 H 1.09000 * 109.46989 * 328.20615 * 1 2 3 27 27 H 1.09004 * 109.46668 * 88.20386 * 1 2 3 28 28 H 1.08998 * 109.46765 * 208.20019 * 1 2 3 29 29 H 1.07996 * 120.00208 * 359.97438 * 6 5 2 30 30 H 1.07996 * 120.00067 * 180.02562 * 7 6 5 31 31 H 1.08003 * 120.00238 * 180.28256 * 8 7 6 32 32 H 1.07993 * 120.00532 * 179.76301 * 9 8 7 33 33 H 0.97003 * 119.99705 * 245.28527 * 14 11 10 34 34 H 1.09003 * 109.47058 * 283.38047 * 15 14 11 35 35 H 1.08995 * 109.47781 * 43.38379 * 15 14 11 36 36 H 1.09003 * 109.46483 * 299.99495 * 16 15 14 37 37 H 1.08994 * 109.47234 * 59.99699 * 16 15 14 38 38 H 1.09004 * 109.46999 * 299.99805 * 17 16 15 39 39 H 1.09001 * 109.47261 * 59.99190 * 17 16 15 40 40 H 0.97002 * 120.00328 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3128 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9117 5 6 2.2536 -0.6288 1.5863 6 6 2.9442 -1.8221 1.6897 7 6 3.2895 -2.3151 2.9339 8 6 2.9491 -1.6121 4.0748 9 6 2.2541 -0.4219 3.9716 10 6 1.9086 0.0712 2.7270 11 16 1.0285 1.5918 2.5950 12 8 1.7686 2.4072 1.6969 13 8 -0.3353 1.2497 2.3901 14 7 1.1075 2.3338 4.0735 15 6 2.3978 2.7900 4.5960 16 6 2.1640 3.7818 5.7374 17 6 3.5116 4.2577 6.2836 18 6 3.2813 5.2350 7.4074 19 1 2.2743 5.4914 7.7022 20 6 4.3559 5.8027 8.0584 21 7 5.5820 5.4909 7.6991 22 14 4.0704 7.0146 9.4509 23 1 3.3037 6.3508 10.5356 24 1 5.3784 7.4765 9.9811 25 1 3.3022 8.1798 8.9433 26 1 -0.3633 0.8735 0.5414 27 1 -0.3633 0.0322 -1.0272 28 1 -0.3633 -0.9057 0.4856 29 1 3.2139 -2.3690 0.7984 30 1 3.8293 -3.2470 3.0147 31 1 3.2229 -1.9950 5.0468 32 1 1.9848 0.1253 4.8628 33 1 0.2994 2.4663 4.5934 34 1 2.9621 1.9347 4.9679 35 1 2.9602 3.2780 3.8001 36 1 1.5997 4.6370 5.3655 37 1 1.6016 3.2937 6.5333 38 1 4.0755 3.4022 6.6555 39 1 4.0744 4.7456 5.4878 40 1 6.3381 5.8900 8.1573 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171713995.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:28 Heat of formation + Delta-G solvation = -89.117279 kcal Electronic energy + Delta-G solvation = -26711.051903 eV Core-core repulsion = 22746.745495 eV Total energy + Delta-G solvation = -3964.306408 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -39.59943 -37.52481 -37.29670 -36.26272 -36.11276 -35.92875 -33.35641 -32.03351 -31.71605 -30.93869 -29.71517 -26.48417 -24.05098 -23.65862 -23.10490 -20.73839 -19.94254 -19.16558 -18.74133 -17.63505 -17.07924 -16.72865 -16.42575 -16.21210 -15.70634 -15.51508 -15.30684 -15.03729 -14.67459 -14.47293 -14.33009 -13.95306 -13.59019 -13.42146 -13.07459 -12.71085 -12.49574 -12.34754 -12.30744 -12.26145 -12.10475 -12.00063 -11.62212 -11.51308 -11.35252 -11.06429 -10.94190 -10.81862 -10.74509 -10.60108 -10.00850 -9.95502 -9.72457 -9.53556 -9.39746 -9.16591 -8.40381 -6.05354 -4.08523 -0.37872 0.12160 0.15195 0.62080 2.38719 2.60646 2.86101 3.29397 3.30098 3.35169 3.37076 3.43068 3.82758 4.21517 4.41251 4.42151 4.52470 4.57545 4.63917 4.73109 4.88297 5.12838 5.17088 5.25909 5.30638 5.36155 5.52628 5.54917 5.60353 5.78528 5.78857 5.98733 6.28263 6.48106 6.67035 6.85474 7.01308 7.58085 7.70432 7.92784 8.33927 8.97792 9.55984 11.05818 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.019192 B = 0.002818 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.585169 B = 9933.822516 C =10454.155735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.677 4.677 2 S 2.433 3.567 3 O -0.865 6.865 4 O -0.931 6.931 5 C -0.571 4.571 6 C -0.037 4.037 7 C -0.092 4.092 8 C -0.083 4.083 9 C -0.047 4.047 10 C -0.587 4.587 11 S 2.630 3.370 12 O -0.880 6.880 13 O -0.956 6.956 14 N -1.104 6.104 15 C 0.105 3.895 16 C -0.115 4.115 17 C 0.021 3.979 18 C -0.524 4.524 19 H 0.056 0.944 20 C 0.058 3.942 21 N -0.894 5.894 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.155 0.845 27 H 0.143 0.857 28 H 0.139 0.861 29 H 0.154 0.846 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.149 0.851 33 H 0.420 0.580 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.018 0.982 39 H 0.022 0.978 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.045 -18.030 -11.895 23.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.827 4.827 2 S 2.610 3.390 3 O -0.862 6.862 4 O -0.928 6.928 5 C -0.656 4.656 6 C -0.056 4.056 7 C -0.111 4.111 8 C -0.102 4.102 9 C -0.066 4.066 10 C -0.671 4.671 11 S 2.716 3.284 12 O -0.869 6.869 13 O -0.946 6.946 14 N -0.867 5.867 15 C -0.019 4.019 16 C -0.155 4.155 17 C -0.017 4.017 18 C -0.562 4.562 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.202 1.202 26 H 0.173 0.827 27 H 0.161 0.839 28 H 0.157 0.843 29 H 0.171 0.829 30 H 0.159 0.841 31 H 0.160 0.840 32 H 0.167 0.833 33 H 0.256 0.744 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.037 0.963 39 H 0.040 0.960 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.486 -17.500 -13.329 23.956 hybrid contribution -0.317 -0.341 2.310 2.357 sum -9.803 -17.841 -11.019 23.147 Atomic orbital electron populations 1.30793 1.23960 1.14676 1.13262 1.07491 0.79585 0.76736 0.75237 1.94010 1.76222 1.32010 1.83978 1.93579 1.77598 1.62129 1.59505 1.30494 1.10095 1.05841 1.19171 1.21143 0.92598 0.92500 0.99396 1.21623 0.97234 0.99774 0.92422 1.21662 0.94805 0.94092 0.99618 1.21184 0.94187 0.95472 0.95791 1.31074 1.14711 1.22385 0.98893 1.04295 0.74662 0.74938 0.74516 1.93984 1.71607 1.63541 1.57783 1.93611 1.32245 1.84753 1.83979 1.55391 1.17173 1.73904 1.40266 1.21798 0.81941 0.98890 0.99310 1.21873 1.02164 0.96776 0.94671 1.19086 0.90250 0.96351 0.96024 1.21161 0.92620 1.25396 1.17034 0.92620 1.25018 0.95198 0.96803 0.97374 1.69945 0.97916 1.43801 1.41626 0.86640 0.77321 0.81561 0.82353 1.20290 1.21291 1.20183 0.82725 0.83911 0.84257 0.82859 0.84126 0.83996 0.83337 0.74445 0.92046 0.89687 0.92079 0.92491 0.96323 0.96008 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -5.90 9.77 101.05 0.99 -4.92 16 2 S 2.43 28.95 5.21 -107.50 -0.56 28.39 16 3 O -0.87 -13.71 13.63 -67.59 -0.92 -14.63 16 4 O -0.93 -11.98 16.74 -57.54 -0.96 -12.94 16 5 C -0.57 -6.78 5.58 -39.58 -0.22 -7.00 16 6 C -0.04 -0.37 9.50 -39.58 -0.38 -0.74 16 7 C -0.09 -0.76 10.05 -39.58 -0.40 -1.16 16 8 C -0.08 -0.72 10.05 -39.58 -0.40 -1.12 16 9 C -0.05 -0.49 8.82 -39.58 -0.35 -0.84 16 10 C -0.59 -7.18 5.80 -39.58 -0.23 -7.41 16 11 S 2.63 35.14 4.19 -107.50 -0.45 34.69 16 12 O -0.88 -14.83 13.23 -67.49 -0.89 -15.72 16 13 O -0.96 -12.43 14.68 -57.17 -0.84 -13.27 16 14 N -1.10 -13.74 5.16 -10.62 -0.05 -13.80 16 15 C 0.11 1.59 5.82 -4.04 -0.02 1.57 16 16 C -0.12 -2.10 5.30 -26.73 -0.14 -2.24 16 17 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 18 C -0.52 -14.18 9.11 -34.44 -0.31 -14.50 16 19 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 21 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 22 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H 0.15 1.56 4.77 -51.92 -0.25 1.31 16 27 H 0.14 0.81 8.14 -51.92 -0.42 0.39 16 28 H 0.14 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.15 1.25 7.21 -52.49 -0.38 0.87 16 30 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 31 H 0.14 0.83 8.06 -52.48 -0.42 0.40 16 32 H 0.15 1.30 6.29 -52.49 -0.33 0.97 16 33 H 0.42 4.24 8.67 -34.48 -0.30 3.94 16 34 H 0.06 0.83 6.65 -51.93 -0.35 0.48 16 35 H 0.08 1.38 7.71 -51.93 -0.40 0.98 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 349.53 15.07 5.27 5.27 Total: -1.00 -36.44 349.53 -10.32 -46.76 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -4.92 Total: 1.11 kcal Atomic # 6 Polarization: -34.78 SS G_CDS: -1.70 Total: -36.48 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.68 Total: -39.22 kcal Atomic # 8 Polarization: -52.95 SS G_CDS: -3.62 Total: -56.57 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 64.08 SS G_CDS: -1.01 Total: 63.07 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.44 -10.32 -46.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171713995.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.358 kcal (2) G-P(sol) polarization free energy of solvation -36.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds