Wall clock time and date at job start Wed Apr 1 2020 04:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46930 * 297.06807 * 3 2 1 5 5 C 1.37102 * 120.00280 * 263.45015 * 4 3 2 6 6 H 1.07995 * 119.99919 * 202.73840 * 5 4 3 7 7 C 1.38951 * 119.99484 * 22.73212 * 5 4 3 8 8 N 1.31412 * 120.00315 * 4.57640 * 7 5 4 9 9 Si 1.86803 * 119.99678 * 184.29771 * 7 5 4 10 10 H 1.48508 * 109.47082 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47410 * 120.00154 * 9 7 5 12 12 H 1.48501 * 109.47117 * 240.00426 * 9 7 5 13 13 C 1.34774 * 120.00071 * 83.45684 * 4 3 2 14 14 O 1.21286 * 120.00264 * 184.15716 * 13 4 3 15 15 C 1.50702 * 120.00036 * 4.14483 * 13 4 3 16 16 H 1.09000 * 110.43565 * 332.22494 * 15 13 4 17 17 C 1.54629 * 110.48362 * 94.76266 * 15 13 4 18 18 C 1.54691 * 101.66672 * 143.39510 * 17 15 13 19 19 N 1.46752 * 105.53477 * 334.74302 * 18 17 15 20 20 C 1.39932 * 124.35044 * 196.93955 * 19 18 17 21 21 C 1.38905 * 120.06258 * 7.11521 * 20 19 18 22 22 C 1.38092 * 119.95588 * 179.97438 * 21 20 19 23 23 C 1.38283 * 120.08527 * 359.97438 * 22 21 20 24 24 C 1.38373 * 120.12448 * 0.02562 * 23 22 21 25 25 Cl 1.73604 * 119.97639 * 180.02562 * 24 23 22 26 26 C 1.38251 * 120.04937 * 359.74263 * 24 23 22 27 27 C 1.34414 * 111.30487 * 16.92233 * 19 18 17 28 28 O 1.21289 * 124.94613 * 179.55457 * 27 19 18 29 29 H 1.09002 * 109.47188 * 177.07095 * 3 2 1 30 30 H 1.08998 * 109.47497 * 57.06944 * 3 2 1 31 31 H 0.96995 * 119.99879 * 179.97438 * 8 7 5 32 32 H 1.09004 * 110.96882 * 261.59837 * 17 15 13 33 33 H 1.09003 * 110.96867 * 25.36009 * 17 15 13 34 34 H 1.09001 * 110.29293 * 215.67403 * 18 17 15 35 35 H 1.09009 * 110.20760 * 93.75887 * 18 17 15 36 36 H 1.08002 * 120.01727 * 359.94574 * 21 20 19 37 37 H 1.07999 * 119.95707 * 180.02562 * 22 21 20 38 38 H 1.08001 * 119.93628 * 179.97438 * 23 22 21 39 39 H 1.07997 * 120.04925 * 180.27758 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0966 -0.6276 1.2299 5 6 3.4525 0.1493 2.3021 6 1 4.1341 -0.2363 3.0457 7 6 2.9361 1.4328 2.4317 8 7 2.0384 1.8693 1.5770 9 14 3.5123 2.5349 3.8255 10 1 4.5155 1.8107 4.6468 11 1 4.1278 3.7636 3.2630 12 1 2.3520 2.9066 4.6746 13 6 3.1964 -1.9694 1.3075 14 8 3.5286 -2.4937 2.3496 15 6 2.8950 -2.8186 0.0995 16 1 2.1808 -2.3144 -0.5515 17 6 4.1952 -3.1428 -0.6721 18 6 3.9255 -4.5909 -1.1448 19 7 2.9614 -5.1440 -0.1866 20 6 2.6983 -6.5094 -0.0303 21 6 3.4708 -7.4483 -0.7020 22 6 3.2096 -8.7952 -0.5458 23 6 2.1802 -9.2106 0.2790 24 6 1.4085 -8.2783 0.9498 25 17 0.1177 -8.8040 1.9847 26 6 1.6684 -6.9286 0.8009 27 6 2.3636 -4.1706 0.5218 28 8 1.5204 -4.3499 1.3750 29 1 2.9709 1.0272 -0.0525 30 1 2.9717 -0.5578 -0.8625 31 1 1.6777 2.7651 1.6677 32 1 4.3232 -2.4707 -1.5206 33 1 5.0611 -3.1036 -0.0111 34 1 4.8479 -5.1714 -1.1296 35 1 3.4998 -4.5862 -2.1483 36 1 4.2749 -7.1249 -1.3465 37 1 3.8105 -9.5252 -1.0677 38 1 1.9778 -10.2646 0.3991 39 1 1.0690 -6.2011 1.3280 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173372727.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:16 Heat of formation + Delta-G solvation = 8.131949 kcal Electronic energy + Delta-G solvation = -27676.266789 eV Core-core repulsion = 23610.982518 eV Total energy + Delta-G solvation = -4065.284271 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.29029 -39.27588 -38.25559 -36.70950 -36.30668 -35.84664 -34.41855 -33.22076 -31.81952 -30.90888 -29.30296 -28.13889 -27.47465 -25.01259 -23.43666 -23.37271 -21.65480 -20.48299 -18.93545 -17.97996 -17.83443 -17.43828 -16.59471 -16.41279 -15.89604 -15.43305 -15.25717 -14.69578 -14.60051 -14.17291 -14.01210 -13.86108 -13.74063 -13.46981 -13.29458 -13.11101 -12.92668 -12.49237 -12.17984 -12.08759 -11.83335 -11.77087 -11.68861 -11.53547 -11.32493 -11.24652 -11.09119 -11.03787 -10.61934 -10.49579 -10.39609 -10.26742 -9.52747 -9.32832 -8.94553 -8.78813 -8.13068 -8.07071 -6.53182 -4.14782 0.96889 1.12857 2.00345 2.56050 2.74913 3.03827 3.19035 3.24501 3.37313 3.56512 3.67091 3.93141 4.05553 4.25299 4.31823 4.56825 4.71026 4.83768 4.86708 4.91241 4.94307 4.96414 5.11856 5.14612 5.22771 5.29528 5.39400 5.51940 5.64782 5.72420 5.92579 5.96270 6.02081 6.12559 6.20344 6.23577 6.59308 6.83984 6.95799 7.38090 7.78486 8.11457 8.19469 8.69346 8.89281 9.07216 9.58214 10.50361 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.016785 B = 0.002870 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.733194 B = 9753.607555 C =10173.031919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.243 3.757 3 C 0.218 3.782 4 N -0.439 5.439 5 C -0.304 4.304 6 H 0.108 0.892 7 C 0.032 3.968 8 N -0.889 5.889 9 Si 0.936 3.064 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.281 1.281 13 C 0.476 3.524 14 O -0.555 6.555 15 C -0.144 4.144 16 H 0.122 0.878 17 C -0.117 4.117 18 C 0.099 3.901 19 N -0.564 5.564 20 C 0.193 3.807 21 C -0.160 4.160 22 C -0.080 4.080 23 C -0.145 4.145 24 C -0.003 4.003 25 Cl -0.068 7.068 26 C -0.153 4.153 27 C 0.544 3.456 28 O -0.480 6.480 29 H 0.144 0.856 30 H 0.077 0.923 31 H 0.274 0.726 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.089 -14.802 -11.710 20.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.076 4.076 3 C 0.091 3.909 4 N -0.159 5.159 5 C -0.431 4.431 6 H 0.125 0.875 7 C -0.171 4.171 8 N -0.529 5.529 9 Si 0.762 3.238 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.207 1.207 13 C 0.262 3.738 14 O -0.436 6.436 15 C -0.169 4.169 16 H 0.139 0.861 17 C -0.155 4.155 18 C -0.023 4.023 19 N -0.288 5.288 20 C 0.097 3.903 21 C -0.181 4.181 22 C -0.098 4.098 23 C -0.165 4.165 24 C -0.030 4.030 25 Cl -0.039 7.039 26 C -0.174 4.174 27 C 0.331 3.669 28 O -0.351 6.351 29 H 0.161 0.839 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.150 0.850 37 H 0.153 0.847 38 H 0.149 0.851 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.904 -14.951 -10.601 18.972 hybrid contribution 0.340 0.739 0.688 1.066 sum 5.244 -14.211 -9.912 18.103 Atomic orbital electron populations 1.80928 1.13651 1.11060 1.09512 1.29368 0.95448 0.91011 0.91748 1.18933 0.81481 1.03338 0.87167 1.43518 1.56410 1.03379 1.12612 1.19803 1.25598 0.94918 1.02741 0.87462 1.25367 0.95009 0.98298 0.98412 1.69702 1.27412 1.19391 1.36418 0.85699 0.78624 0.79161 0.80310 1.19114 1.20474 1.20686 1.19208 0.84213 0.82467 0.87899 1.90616 1.51011 1.71620 1.30334 1.22130 0.99923 0.94869 0.99998 0.86057 1.22670 0.97109 0.94745 1.01017 1.22327 0.92755 0.94972 0.92248 1.45799 1.41163 1.03660 1.38196 1.17593 0.94424 0.82231 0.96009 1.20855 1.01216 0.92556 1.03456 1.20827 0.96594 0.95044 0.97368 1.20964 0.96992 0.99317 0.99242 1.20694 0.92654 0.93542 0.96148 1.98374 1.48909 1.90488 1.66133 1.21542 0.99219 0.95530 1.01143 1.20421 0.80585 0.86064 0.79786 1.90641 1.30640 1.84283 1.29562 0.83863 0.90544 0.91498 0.87757 0.88607 0.89286 0.89771 0.84991 0.84746 0.85057 0.81667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.26 18.54 42.15 0.78 -10.47 16 2 C 0.24 5.27 12.92 -20.76 -0.27 5.00 16 3 C 0.22 4.07 4.77 -6.83 -0.03 4.04 16 4 N -0.44 -9.83 2.60 -117.93 -0.31 -10.14 16 5 C -0.30 -7.58 9.29 -14.93 -0.14 -7.72 16 6 H 0.11 2.81 7.43 -52.49 -0.39 2.42 16 7 C 0.03 0.76 5.22 -17.47 -0.09 0.67 16 8 N -0.89 -21.65 8.88 55.50 0.49 -21.15 16 9 Si 0.94 19.56 29.55 -169.99 -5.02 14.54 16 10 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 11 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 13 C 0.48 10.51 6.46 -10.99 -0.07 10.44 16 14 O -0.56 -14.68 16.00 3.56 0.06 -14.62 16 15 C -0.14 -2.38 2.43 -91.78 -0.22 -2.60 16 16 H 0.12 1.84 5.93 -51.93 -0.31 1.53 16 17 C -0.12 -1.25 6.68 -24.99 -0.17 -1.42 16 18 C 0.10 0.91 6.54 -3.01 -0.02 0.89 16 19 N -0.56 -7.98 3.14 -112.15 -0.35 -8.33 16 20 C 0.19 2.65 6.59 -83.69 -0.55 2.10 16 21 C -0.16 -1.61 9.42 -39.39 -0.37 -1.99 16 22 C -0.08 -0.71 10.04 -39.62 -0.40 -1.11 16 23 C -0.15 -1.51 9.83 -39.52 -0.39 -1.90 16 24 C 0.00 -0.04 6.32 -39.53 -0.25 -0.29 16 25 Cl -0.07 -0.88 28.95 -51.86 -1.50 -2.38 16 26 C -0.15 -2.38 9.06 -39.36 -0.36 -2.74 16 27 C 0.54 10.05 6.90 -10.86 -0.07 9.98 16 28 O -0.48 -10.93 14.50 3.55 0.05 -10.88 16 29 H 0.14 2.76 6.23 -51.93 -0.32 2.43 16 30 H 0.08 1.01 6.67 -51.93 -0.35 0.66 16 31 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 32 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.10 1.12 7.91 -51.93 -0.41 0.71 16 34 H 0.09 0.61 7.19 -51.93 -0.37 0.23 16 35 H 0.08 0.56 8.14 -51.92 -0.42 0.13 16 36 H 0.13 0.95 6.72 -52.49 -0.35 0.60 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 38 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.17 3.07 5.28 -52.49 -0.28 2.79 16 LS Contribution 350.03 15.07 5.27 5.27 Total: -1.00 -34.40 350.03 -7.54 -41.93 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -3.61 Total: 2.88 kcal Atomic # 6 Polarization: 16.76 SS G_CDS: -3.40 Total: 13.35 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.62 Total: -50.10 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: 0.11 Total: -25.50 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.50 Total: -2.38 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.40 -7.54 -41.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173372727.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.065 kcal (2) G-P(sol) polarization free energy of solvation -34.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds