Wall clock time and date at job start Wed Apr 1 2020 04:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46930 * 297.06807 * 3 2 1 5 5 C 1.37102 * 120.00280 * 263.45015 * 4 3 2 6 6 H 1.07995 * 119.99919 * 202.73840 * 5 4 3 7 7 C 1.38951 * 119.99484 * 22.73212 * 5 4 3 8 8 N 1.31412 * 120.00315 * 4.57640 * 7 5 4 9 9 Si 1.86803 * 119.99678 * 184.29771 * 7 5 4 10 10 H 1.48508 * 109.47082 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47410 * 120.00154 * 9 7 5 12 12 H 1.48501 * 109.47117 * 240.00426 * 9 7 5 13 13 C 1.34774 * 120.00071 * 83.45684 * 4 3 2 14 14 O 1.21286 * 120.00264 * 184.15716 * 13 4 3 15 15 C 1.50702 * 120.00036 * 4.14483 * 13 4 3 16 16 H 1.09000 * 110.43565 * 332.22494 * 15 13 4 17 17 C 1.54629 * 110.48362 * 94.76266 * 15 13 4 18 18 C 1.54691 * 101.66672 * 143.39510 * 17 15 13 19 19 N 1.46752 * 105.53477 * 334.74302 * 18 17 15 20 20 C 1.39932 * 124.35044 * 196.93955 * 19 18 17 21 21 C 1.38905 * 120.06258 * 7.11521 * 20 19 18 22 22 C 1.38092 * 119.95588 * 179.97438 * 21 20 19 23 23 C 1.38283 * 120.08527 * 359.97438 * 22 21 20 24 24 C 1.38373 * 120.12448 * 0.02562 * 23 22 21 25 25 Cl 1.73604 * 119.97639 * 180.02562 * 24 23 22 26 26 C 1.38251 * 120.04937 * 359.74263 * 24 23 22 27 27 C 1.34414 * 111.30487 * 16.92233 * 19 18 17 28 28 O 1.21289 * 124.94613 * 179.55457 * 27 19 18 29 29 H 1.09002 * 109.47188 * 177.07095 * 3 2 1 30 30 H 1.08998 * 109.47497 * 57.06944 * 3 2 1 31 31 H 0.96995 * 119.99879 * 179.97438 * 8 7 5 32 32 H 1.09004 * 110.96882 * 261.59837 * 17 15 13 33 33 H 1.09003 * 110.96867 * 25.36009 * 17 15 13 34 34 H 1.09001 * 110.29293 * 215.67403 * 18 17 15 35 35 H 1.09009 * 110.20760 * 93.75887 * 18 17 15 36 36 H 1.08002 * 120.01727 * 359.94574 * 21 20 19 37 37 H 1.07999 * 119.95707 * 180.02562 * 22 21 20 38 38 H 1.08001 * 119.93628 * 179.97438 * 23 22 21 39 39 H 1.07997 * 120.04925 * 180.27758 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0966 -0.6276 1.2299 5 6 3.4525 0.1493 2.3021 6 1 4.1341 -0.2363 3.0457 7 6 2.9361 1.4328 2.4317 8 7 2.0384 1.8693 1.5770 9 14 3.5123 2.5349 3.8255 10 1 4.5155 1.8107 4.6468 11 1 4.1278 3.7636 3.2630 12 1 2.3520 2.9066 4.6746 13 6 3.1964 -1.9694 1.3075 14 8 3.5286 -2.4937 2.3496 15 6 2.8950 -2.8186 0.0995 16 1 2.1808 -2.3144 -0.5515 17 6 4.1952 -3.1428 -0.6721 18 6 3.9255 -4.5909 -1.1448 19 7 2.9614 -5.1440 -0.1866 20 6 2.6983 -6.5094 -0.0303 21 6 3.4708 -7.4483 -0.7020 22 6 3.2096 -8.7952 -0.5458 23 6 2.1802 -9.2106 0.2790 24 6 1.4085 -8.2783 0.9498 25 17 0.1177 -8.8040 1.9847 26 6 1.6684 -6.9286 0.8009 27 6 2.3636 -4.1706 0.5218 28 8 1.5204 -4.3499 1.3750 29 1 2.9709 1.0272 -0.0525 30 1 2.9717 -0.5578 -0.8625 31 1 1.6777 2.7651 1.6677 32 1 4.3232 -2.4707 -1.5206 33 1 5.0611 -3.1036 -0.0111 34 1 4.8479 -5.1714 -1.1296 35 1 3.4998 -4.5862 -2.1483 36 1 4.2749 -7.1249 -1.3465 37 1 3.8105 -9.5252 -1.0677 38 1 1.9778 -10.2646 0.3991 39 1 1.0690 -6.2011 1.3280 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173372727.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:15 Heat of formation + Delta-G solvation = -14.287923 kcal Electronic energy + Delta-G solvation = -27677.238988 eV Core-core repulsion = 23610.982518 eV Total energy + Delta-G solvation = -4066.256470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.46103 -40.61564 -39.53812 -37.88198 -37.65042 -37.34363 -36.23331 -34.40082 -33.52027 -31.80848 -30.34521 -29.36505 -28.95803 -26.70324 -24.49790 -24.31059 -22.71919 -21.65159 -20.36610 -19.76259 -18.94966 -18.76153 -18.03289 -17.59072 -17.11292 -16.84580 -16.29213 -16.11719 -15.75773 -15.63561 -15.56050 -14.89274 -14.82291 -14.78127 -14.61190 -14.45810 -14.25760 -13.83219 -13.69220 -13.31242 -13.21447 -13.02551 -12.96177 -12.90462 -12.65549 -12.52024 -12.42587 -12.16187 -12.12512 -12.09358 -12.01851 -11.15906 -11.14473 -10.82126 -10.55689 -9.96211 -9.86494 -9.03628 -8.38659 -6.06500 0.05735 0.19875 1.05204 1.28914 1.36426 1.46295 1.56602 1.64284 1.81865 1.98786 2.23469 2.32795 2.67235 2.96243 3.00703 3.14393 3.43226 3.60248 3.82616 3.85492 3.94005 4.06572 4.12539 4.13563 4.31911 4.39927 4.46372 4.58149 4.63338 4.82923 5.00348 5.04324 5.05371 5.11412 5.26119 5.32466 5.41613 5.43369 5.84154 5.96604 6.00354 6.35965 6.87781 6.97468 7.06818 7.27072 7.81512 8.61459 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.016785 B = 0.002870 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.733194 B = 9753.607555 C =10173.031919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C 0.255 3.745 3 C 0.218 3.782 4 N -0.449 5.449 5 C -0.330 4.330 6 H 0.082 0.918 7 C 0.004 3.996 8 N -0.899 5.899 9 Si 0.989 3.011 10 H -0.273 1.273 11 H -0.258 1.258 12 H -0.293 1.293 13 C 0.470 3.530 14 O -0.612 6.612 15 C -0.141 4.141 16 H 0.136 0.864 17 C -0.107 4.107 18 C 0.093 3.907 19 N -0.558 5.558 20 C 0.165 3.835 21 C -0.141 4.141 22 C -0.066 4.066 23 C -0.139 4.139 24 C -0.021 4.021 25 Cl -0.080 7.080 26 C -0.190 4.190 27 C 0.524 3.476 28 O -0.547 6.547 29 H 0.142 0.858 30 H 0.144 0.856 31 H 0.275 0.725 32 H 0.156 0.844 33 H 0.084 0.916 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.175 0.825 37 H 0.183 0.817 38 H 0.156 0.844 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.045 -16.258 -15.585 24.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.197 5.197 2 C -0.062 4.062 3 C 0.092 3.908 4 N -0.169 5.169 5 C -0.457 4.457 6 H 0.100 0.900 7 C -0.197 4.197 8 N -0.539 5.539 9 Si 0.814 3.186 10 H -0.197 1.197 11 H -0.182 1.182 12 H -0.220 1.220 13 C 0.258 3.742 14 O -0.496 6.496 15 C -0.165 4.165 16 H 0.154 0.846 17 C -0.145 4.145 18 C -0.026 4.026 19 N -0.281 5.281 20 C 0.070 3.930 21 C -0.161 4.161 22 C -0.084 4.084 23 C -0.158 4.158 24 C -0.048 4.048 25 Cl -0.052 7.052 26 C -0.212 4.212 27 C 0.313 3.687 28 O -0.423 6.423 29 H 0.160 0.840 30 H 0.161 0.839 31 H 0.085 0.915 32 H 0.174 0.826 33 H 0.102 0.898 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.192 0.808 37 H 0.200 0.800 38 H 0.174 0.826 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.897 -16.412 -14.558 23.316 hybrid contribution -0.563 1.066 1.901 2.252 sum 7.333 -15.346 -12.656 21.200 Atomic orbital electron populations 1.80930 1.15179 1.12655 1.10949 1.30040 0.96127 0.89633 0.90426 1.19362 0.79431 1.04280 0.87756 1.43684 1.56223 1.03682 1.13282 1.19703 1.26322 0.95816 1.03885 0.90018 1.25928 0.94926 0.98819 1.00029 1.69797 1.27555 1.19523 1.37041 0.84919 0.77573 0.78278 0.77865 1.19713 1.18227 1.21983 1.20149 0.82332 0.82676 0.89022 1.90574 1.53186 1.72753 1.33120 1.22119 1.03520 0.92930 0.97954 0.84637 1.22879 0.93003 0.97050 1.01522 1.22844 0.93404 0.93799 0.92562 1.45895 1.40887 1.03381 1.37905 1.17895 0.95193 0.82731 0.97162 1.21330 1.00617 0.92134 1.02027 1.21423 0.95557 0.95550 0.95858 1.21374 0.96367 0.99924 0.98142 1.20875 0.93392 0.93395 0.97160 1.98359 1.49699 1.90373 1.66731 1.21371 1.00855 0.95875 1.03069 1.20931 0.80285 0.87882 0.79635 1.90615 1.33653 1.85426 1.32651 0.84028 0.83901 0.91511 0.82637 0.89750 0.85784 0.85769 0.80815 0.79974 0.82618 0.86033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -24.96 18.54 20.01 0.37 -24.58 16 2 C 0.26 11.03 12.92 89.44 1.16 12.18 16 3 C 0.22 7.81 4.77 84.58 0.40 8.21 16 4 N -0.45 -20.32 2.60 -645.41 -1.68 -22.01 16 5 C -0.33 -16.96 9.29 84.04 0.78 -16.18 16 6 H 0.08 4.53 7.43 -2.91 -0.02 4.51 16 7 C 0.00 0.20 5.22 84.93 0.44 0.64 16 8 N -0.90 -43.88 8.88 21.66 0.19 -43.69 16 9 Si 0.99 40.63 29.55 68.60 2.03 42.66 16 10 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 11 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 12 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 13 C 0.47 21.26 6.46 87.66 0.57 21.82 16 14 O -0.61 -34.26 16.00 -1.14 -0.02 -34.28 16 15 C -0.14 -4.51 2.43 -11.55 -0.03 -4.54 16 16 H 0.14 3.85 5.93 -2.39 -0.01 3.84 16 17 C -0.11 -1.86 6.68 31.73 0.21 -1.64 16 18 C 0.09 1.25 6.54 86.91 0.57 1.82 16 19 N -0.56 -14.96 3.14 -627.32 -1.97 -16.93 16 20 C 0.16 4.33 6.59 38.15 0.25 4.58 16 21 C -0.14 -2.19 9.42 22.39 0.21 -1.97 16 22 C -0.07 -0.84 10.04 22.25 0.22 -0.62 16 23 C -0.14 -2.51 9.83 22.31 0.22 -2.29 16 24 C -0.02 -0.57 6.32 22.30 0.14 -0.43 16 25 Cl -0.08 -2.20 28.95 -2.72 -0.08 -2.28 16 26 C -0.19 -6.23 9.06 22.41 0.20 -6.03 16 27 C 0.52 19.97 6.90 87.90 0.61 20.57 16 28 O -0.55 -27.21 14.50 -1.15 -0.02 -27.22 16 29 H 0.14 5.24 6.23 -2.39 -0.01 5.22 16 30 H 0.14 3.18 6.67 -2.39 -0.02 3.16 16 31 H 0.27 13.01 8.31 -92.71 -0.77 12.23 16 32 H 0.16 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.08 1.72 7.91 -2.39 -0.02 1.70 16 34 H 0.12 0.86 7.19 -2.39 -0.02 0.85 16 35 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.17 1.21 6.72 -2.91 -0.02 1.19 16 37 H 0.18 0.70 8.06 -2.91 -0.02 0.68 16 38 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 39 H 0.12 5.10 5.28 -2.91 -0.02 5.08 16 Total: -1.00 -87.28 350.03 5.91 -81.37 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 1.13 Total: 10.84 kcal Atomic # 6 Polarization: 30.17 SS G_CDS: 5.96 Total: 36.12 kcal Atomic # 7 Polarization: -104.12 SS G_CDS: -3.09 Total: -107.20 kcal Atomic # 8 Polarization: -61.47 SS G_CDS: -0.03 Total: -61.50 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Atomic # 17 Polarization: -2.20 SS G_CDS: -0.08 Total: -2.28 kcal Total: -87.28 5.91 -81.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173372727.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.078 kcal (2) G-P(sol) polarization free energy of solvation -87.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds