Wall clock time and date at job start Wed Apr 1 2020 04:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47121 * 321.46165 * 3 2 1 5 5 C 1.37102 * 119.99828 * 262.75136 * 4 3 2 6 6 H 1.08002 * 119.99757 * 145.11940 * 5 4 3 7 7 C 1.38946 * 120.00130 * 325.11814 * 5 4 3 8 8 N 1.31413 * 120.00073 * 340.48097 * 7 5 4 9 9 Si 1.86801 * 120.00176 * 160.47730 * 7 5 4 10 10 H 1.48497 * 109.47053 * 94.99037 * 9 7 5 11 11 H 1.48501 * 109.47317 * 214.99145 * 9 7 5 12 12 H 1.48501 * 109.46904 * 334.99439 * 9 7 5 13 13 C 1.34771 * 120.00390 * 82.75065 * 4 3 2 14 14 O 1.21300 * 120.00562 * 186.33872 * 13 4 3 15 15 C 1.50706 * 120.00026 * 6.34229 * 13 4 3 16 16 H 1.09004 * 110.43215 * 340.19950 * 15 13 4 17 17 C 1.54621 * 110.48668 * 217.51354 * 15 13 4 18 18 C 1.54665 * 101.68382 * 216.30839 * 17 15 13 19 19 N 1.46759 * 105.38081 * 25.76580 * 18 17 15 20 20 C 1.39926 * 124.34969 * 162.86099 * 19 18 17 21 21 C 1.38905 * 120.06608 * 173.31374 * 20 19 18 22 22 C 1.38098 * 119.95881 * 180.02562 * 21 20 19 23 23 C 1.38287 * 120.07959 * 0.24297 * 22 21 20 24 24 C 1.38383 * 120.12543 * 359.49702 * 23 22 21 25 25 Cl 1.73605 * 119.97412 * 180.25311 * 24 23 22 26 26 C 1.38248 * 120.04522 * 0.50850 * 24 23 22 27 27 C 1.34421 * 111.30360 * 342.58813 * 19 18 17 28 28 O 1.21290 * 124.94527 * 180.69210 * 27 19 18 29 29 H 1.09002 * 109.47260 * 201.45741 * 3 2 1 30 30 H 1.09002 * 109.46948 * 81.45991 * 3 2 1 31 31 H 0.96997 * 120.00422 * 179.97438 * 8 7 5 32 32 H 1.08999 * 110.97364 * 334.63825 * 17 15 13 33 33 H 1.09001 * 110.97345 * 98.37136 * 17 15 13 34 34 H 1.09000 * 110.39744 * 266.73751 * 18 17 15 35 35 H 1.08999 * 110.18774 * 144.68084 * 18 17 15 36 36 H 1.08001 * 120.02071 * 359.97438 * 21 20 19 37 37 H 1.07995 * 119.95680 * 179.97438 * 22 21 20 38 38 H 1.07998 * 119.93610 * 179.74952 * 23 22 21 39 39 H 1.07997 * 120.03847 * 179.76723 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -1.0795 0.8605 5 6 3.4665 -0.8119 2.1534 6 1 3.2880 -1.5427 2.9283 7 6 4.0706 0.3995 2.4667 8 7 4.6334 1.1172 1.5206 9 14 4.0829 1.0079 4.2328 10 1 5.3561 0.6092 4.8849 11 1 3.9617 2.4879 4.2474 12 1 2.9408 0.4104 4.9701 13 6 3.1832 -2.3361 0.3814 14 8 3.4772 -3.2494 1.1235 15 6 2.9145 -2.6068 -1.0766 16 1 2.3417 -1.7901 -1.5160 17 6 2.1676 -3.9496 -1.2491 18 6 2.7895 -4.4880 -2.5588 19 7 4.1181 -3.8703 -2.6415 20 6 5.1511 -4.3271 -3.4675 21 6 6.3265 -3.5956 -3.5809 22 6 7.3444 -4.0482 -4.3971 23 6 7.1930 -5.2262 -5.1055 24 6 6.0256 -5.9603 -4.9909 25 17 5.8422 -7.4420 -5.8769 26 6 5.0032 -5.5120 -4.1754 27 6 4.2134 -2.8058 -1.8263 28 8 5.1973 -2.1063 -1.7091 29 1 2.9710 0.9573 0.3759 30 1 2.9714 -0.1518 -1.0163 31 1 5.0548 1.9630 1.7392 32 1 2.3698 -4.6188 -0.4127 33 1 1.0960 -3.7878 -1.3663 34 1 2.1831 -4.1948 -3.4159 35 1 2.8802 -5.5733 -2.5138 36 1 6.4440 -2.6731 -3.0317 37 1 8.2581 -3.4793 -4.4855 38 1 7.9889 -5.5759 -5.7462 39 1 4.0907 -6.0832 -4.0889 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173372742.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:18 Heat of formation + Delta-G solvation = 5.842349 kcal Electronic energy + Delta-G solvation = -27639.184297 eV Core-core repulsion = 23573.800741 eV Total energy + Delta-G solvation = -4065.383556 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.30344 -39.28406 -38.26769 -36.69851 -36.50329 -36.11669 -34.73073 -33.12420 -31.91518 -30.93815 -29.26873 -28.14643 -27.54717 -25.06084 -23.49521 -23.25634 -21.64305 -20.44961 -18.97366 -18.10076 -17.79624 -17.40870 -16.57586 -16.32760 -15.99251 -15.45424 -15.29546 -14.86130 -14.61595 -14.25925 -14.01600 -13.82683 -13.75499 -13.57374 -13.39732 -13.35051 -12.86025 -12.68993 -12.23453 -12.08980 -12.00994 -11.86735 -11.73914 -11.69733 -11.48025 -11.30992 -11.12972 -11.07487 -10.81024 -10.59490 -10.45497 -10.23267 -9.54600 -9.21880 -8.98618 -8.87670 -8.06263 -7.89608 -6.54813 -4.20702 1.03196 1.05862 1.87151 2.50571 2.71565 3.07353 3.08405 3.19842 3.26084 3.29468 3.44266 3.59601 4.00054 4.32270 4.39185 4.50461 4.57005 4.68344 4.86592 4.89041 4.96748 5.02922 5.11692 5.22723 5.27623 5.32002 5.40436 5.50204 5.53439 5.80110 5.92311 5.96476 6.03759 6.10528 6.25735 6.35883 6.62541 6.85724 6.93565 7.41746 7.88260 8.07245 8.07423 8.18603 8.86502 9.06551 9.59162 10.50545 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.017896 B = 0.002825 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.255218 B = 9908.639232 C =10614.778655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.203 3.797 3 C 0.183 3.817 4 N -0.427 5.427 5 C -0.315 4.315 6 H 0.100 0.900 7 C 0.039 3.961 8 N -0.863 5.863 9 Si 0.923 3.077 10 H -0.275 1.275 11 H -0.280 1.280 12 H -0.268 1.268 13 C 0.488 3.512 14 O -0.555 6.555 15 C -0.149 4.149 16 H 0.121 0.879 17 C -0.118 4.118 18 C 0.097 3.903 19 N -0.562 5.562 20 C 0.192 3.808 21 C -0.154 4.154 22 C -0.076 4.076 23 C -0.144 4.144 24 C -0.007 4.007 25 Cl -0.073 7.073 26 C -0.157 4.157 27 C 0.539 3.461 28 O -0.477 6.477 29 H 0.159 0.841 30 H 0.098 0.902 31 H 0.274 0.726 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.163 0.837 37 H 0.137 0.863 38 H 0.132 0.868 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.118 -9.047 -14.531 17.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.115 4.115 3 C 0.056 3.944 4 N -0.145 5.145 5 C -0.442 4.442 6 H 0.118 0.882 7 C -0.166 4.166 8 N -0.501 5.501 9 Si 0.749 3.251 10 H -0.200 1.200 11 H -0.205 1.205 12 H -0.192 1.192 13 C 0.275 3.725 14 O -0.436 6.436 15 C -0.174 4.174 16 H 0.139 0.861 17 C -0.156 4.156 18 C -0.025 4.025 19 N -0.285 5.285 20 C 0.097 3.903 21 C -0.174 4.174 22 C -0.095 4.095 23 C -0.163 4.163 24 C -0.034 4.034 25 Cl -0.044 7.044 26 C -0.178 4.178 27 C 0.327 3.673 28 O -0.349 6.349 29 H 0.175 0.825 30 H 0.116 0.884 31 H 0.085 0.915 32 H 0.123 0.877 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.181 0.819 37 H 0.154 0.846 38 H 0.150 0.850 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.196 -9.034 -14.114 16.759 hybrid contribution 0.389 0.259 0.552 0.723 sum 0.585 -8.775 -13.563 16.165 Atomic orbital electron populations 1.81039 1.13451 1.09650 1.09685 1.30700 0.96371 0.92360 0.92068 1.19364 0.78469 0.99557 0.97047 1.43178 1.54846 1.04389 1.12130 1.19532 1.38330 1.03203 0.83184 0.88219 1.25413 0.93904 0.97438 0.99859 1.69799 1.32124 1.14706 1.33444 0.85966 0.79133 0.77966 0.82073 1.20044 1.20487 1.19198 1.19397 0.81917 0.84510 0.86715 1.90565 1.51248 1.43311 1.58466 1.22164 0.96022 1.01088 0.98075 0.86116 1.22676 1.00194 0.95277 0.97485 1.22359 0.81616 0.99238 0.99253 1.45799 1.12853 1.29955 1.39915 1.17610 0.88281 0.92975 0.91465 1.21856 0.92115 1.02579 1.00835 1.21029 0.98716 0.95060 0.94663 1.20991 0.96837 0.96024 1.02479 1.20529 0.95977 0.89496 0.97402 1.98365 1.97701 1.33828 1.74540 1.20536 1.00289 0.96543 1.00467 1.20463 0.89175 0.79198 0.78437 1.90693 1.33678 1.47077 1.63442 0.82461 0.88380 0.91540 0.87732 0.88581 0.89872 0.89348 0.81934 0.84567 0.85044 0.84645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.04 18.54 42.16 0.78 -8.26 16 2 C 0.20 3.84 15.14 -20.76 -0.31 3.52 16 3 C 0.18 3.57 5.06 -6.83 -0.03 3.54 16 4 N -0.43 -9.87 2.53 -117.93 -0.30 -10.17 16 5 C -0.32 -8.08 9.02 -14.93 -0.13 -8.22 16 6 H 0.10 2.68 7.65 -52.49 -0.40 2.28 16 7 C 0.04 0.95 4.97 -17.47 -0.09 0.86 16 8 N -0.86 -21.17 11.26 55.50 0.62 -20.54 16 9 Si 0.92 19.42 29.60 -169.99 -5.03 14.39 16 10 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 11 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 12 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 13 C 0.49 10.86 6.46 -10.99 -0.07 10.79 16 14 O -0.56 -14.15 15.79 5.54 0.09 -14.06 16 15 C -0.15 -2.48 2.69 -91.78 -0.25 -2.73 16 16 H 0.12 1.77 5.64 -51.93 -0.29 1.47 16 17 C -0.12 -1.51 6.67 -25.00 -0.17 -1.68 16 18 C 0.10 1.02 6.54 -3.03 -0.02 1.00 16 19 N -0.56 -7.94 3.14 -112.17 -0.35 -8.30 16 20 C 0.19 2.61 6.59 -83.70 -0.55 2.06 16 21 C -0.15 -2.14 9.28 -39.39 -0.37 -2.51 16 22 C -0.08 -0.85 10.04 -39.61 -0.40 -1.24 16 23 C -0.14 -1.48 9.83 -39.51 -0.39 -1.87 16 24 C -0.01 -0.08 6.32 -39.52 -0.25 -0.32 16 25 Cl -0.07 -0.71 28.95 -51.86 -1.50 -2.21 16 26 C -0.16 -1.79 9.20 -39.36 -0.36 -2.15 16 27 C 0.54 9.47 7.34 -10.86 -0.08 9.39 16 28 O -0.48 -9.92 14.65 5.55 0.08 -9.84 16 29 H 0.16 3.31 5.35 -51.93 -0.28 3.03 16 30 H 0.10 1.66 6.47 -51.93 -0.34 1.33 16 31 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 32 H 0.10 1.53 7.11 -51.93 -0.37 1.16 16 33 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.76 7.20 -51.93 -0.37 0.38 16 36 H 0.16 2.62 5.27 -52.49 -0.28 2.35 16 37 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.14 1.29 6.73 -52.49 -0.35 0.93 16 LS Contribution 353.03 15.07 5.32 5.32 Total: -1.00 -30.83 353.03 -7.26 -38.09 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -3.51 Total: 5.14 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: -3.47 Total: 10.44 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.76 Total: -47.27 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: 0.17 Total: -23.90 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.39 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.83 -7.26 -38.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173372742.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.936 kcal (2) G-P(sol) polarization free energy of solvation -30.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds