Wall clock time and date at job start Wed Apr 1 2020 04:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47121 * 321.46165 * 3 2 1 5 5 C 1.37102 * 119.99828 * 262.75136 * 4 3 2 6 6 H 1.08002 * 119.99757 * 145.11940 * 5 4 3 7 7 C 1.38946 * 120.00130 * 325.11814 * 5 4 3 8 8 N 1.31413 * 120.00073 * 340.48097 * 7 5 4 9 9 Si 1.86801 * 120.00176 * 160.47730 * 7 5 4 10 10 H 1.48497 * 109.47053 * 94.99037 * 9 7 5 11 11 H 1.48501 * 109.47317 * 214.99145 * 9 7 5 12 12 H 1.48501 * 109.46904 * 334.99439 * 9 7 5 13 13 C 1.34771 * 120.00390 * 82.75065 * 4 3 2 14 14 O 1.21300 * 120.00562 * 186.33872 * 13 4 3 15 15 C 1.50706 * 120.00026 * 6.34229 * 13 4 3 16 16 H 1.09004 * 110.43215 * 340.19950 * 15 13 4 17 17 C 1.54621 * 110.48668 * 217.51354 * 15 13 4 18 18 C 1.54665 * 101.68382 * 216.30839 * 17 15 13 19 19 N 1.46759 * 105.38081 * 25.76580 * 18 17 15 20 20 C 1.39926 * 124.34969 * 162.86099 * 19 18 17 21 21 C 1.38905 * 120.06608 * 173.31374 * 20 19 18 22 22 C 1.38098 * 119.95881 * 180.02562 * 21 20 19 23 23 C 1.38287 * 120.07959 * 0.24297 * 22 21 20 24 24 C 1.38383 * 120.12543 * 359.49702 * 23 22 21 25 25 Cl 1.73605 * 119.97412 * 180.25311 * 24 23 22 26 26 C 1.38248 * 120.04522 * 0.50850 * 24 23 22 27 27 C 1.34421 * 111.30360 * 342.58813 * 19 18 17 28 28 O 1.21290 * 124.94527 * 180.69210 * 27 19 18 29 29 H 1.09002 * 109.47260 * 201.45741 * 3 2 1 30 30 H 1.09002 * 109.46948 * 81.45991 * 3 2 1 31 31 H 0.96997 * 120.00422 * 179.97438 * 8 7 5 32 32 H 1.08999 * 110.97364 * 334.63825 * 17 15 13 33 33 H 1.09001 * 110.97345 * 98.37136 * 17 15 13 34 34 H 1.09000 * 110.39744 * 266.73751 * 18 17 15 35 35 H 1.08999 * 110.18774 * 144.68084 * 18 17 15 36 36 H 1.08001 * 120.02071 * 359.97438 * 21 20 19 37 37 H 1.07995 * 119.95680 * 179.97438 * 22 21 20 38 38 H 1.07998 * 119.93610 * 179.74952 * 23 22 21 39 39 H 1.07997 * 120.03847 * 179.76723 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -1.0795 0.8605 5 6 3.4665 -0.8119 2.1534 6 1 3.2880 -1.5427 2.9283 7 6 4.0706 0.3995 2.4667 8 7 4.6334 1.1172 1.5206 9 14 4.0829 1.0079 4.2328 10 1 5.3561 0.6092 4.8849 11 1 3.9617 2.4879 4.2474 12 1 2.9408 0.4104 4.9701 13 6 3.1832 -2.3361 0.3814 14 8 3.4772 -3.2494 1.1235 15 6 2.9145 -2.6068 -1.0766 16 1 2.3417 -1.7901 -1.5160 17 6 2.1676 -3.9496 -1.2491 18 6 2.7895 -4.4880 -2.5588 19 7 4.1181 -3.8703 -2.6415 20 6 5.1511 -4.3271 -3.4675 21 6 6.3265 -3.5956 -3.5809 22 6 7.3444 -4.0482 -4.3971 23 6 7.1930 -5.2262 -5.1055 24 6 6.0256 -5.9603 -4.9909 25 17 5.8422 -7.4420 -5.8769 26 6 5.0032 -5.5120 -4.1754 27 6 4.2134 -2.8058 -1.8263 28 8 5.1973 -2.1063 -1.7091 29 1 2.9710 0.9573 0.3759 30 1 2.9714 -0.1518 -1.0163 31 1 5.0548 1.9630 1.7392 32 1 2.3698 -4.6188 -0.4127 33 1 1.0960 -3.7878 -1.3663 34 1 2.1831 -4.1948 -3.4159 35 1 2.8802 -5.5733 -2.5138 36 1 6.4440 -2.6731 -3.0317 37 1 8.2581 -3.4793 -4.4855 38 1 7.9889 -5.5759 -5.7462 39 1 4.0907 -6.0832 -4.0889 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173372742.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:17 Heat of formation + Delta-G solvation = -11.488959 kcal Electronic energy + Delta-G solvation = -27639.935839 eV Core-core repulsion = 23573.800741 eV Total energy + Delta-G solvation = -4066.135098 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.50750 -40.63324 -39.54794 -37.95605 -37.72664 -37.36839 -36.46027 -34.34776 -33.65659 -31.84149 -30.35284 -29.44113 -29.07354 -26.76392 -24.46929 -24.39635 -22.75918 -21.64478 -20.42401 -19.83863 -18.92819 -18.82557 -17.83105 -17.60571 -17.25588 -17.06823 -16.43482 -16.26013 -15.74248 -15.66838 -15.37030 -15.00958 -14.95579 -14.90818 -14.73470 -14.55512 -14.20044 -13.93163 -13.79086 -13.66303 -13.30693 -13.03191 -12.98093 -12.84953 -12.69475 -12.61030 -12.58274 -12.41953 -12.12109 -12.08027 -11.90835 -11.16072 -11.05026 -10.84821 -10.65545 -9.86791 -9.74429 -9.05740 -8.41762 -6.14985 0.06383 0.15501 0.99619 1.22738 1.39911 1.44116 1.49839 1.58018 1.61958 1.74552 1.92503 2.29636 2.65193 2.81888 2.90880 3.08373 3.30158 3.41348 3.77782 3.79822 3.83207 3.99434 4.06829 4.12275 4.30754 4.36122 4.39435 4.40184 4.59395 4.66344 4.85734 4.98667 5.00628 5.07050 5.17085 5.34639 5.41485 5.46683 5.83550 5.89264 6.06796 6.32760 6.49756 6.82893 7.03049 7.22275 7.78888 8.63191 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.017896 B = 0.002825 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.255218 B = 9908.639232 C =10614.778655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.218 3.782 3 C 0.191 3.809 4 N -0.441 5.441 5 C -0.349 4.349 6 H 0.074 0.926 7 C 0.011 3.989 8 N -0.878 5.878 9 Si 0.978 3.022 10 H -0.278 1.278 11 H -0.264 1.264 12 H -0.271 1.271 13 C 0.480 3.520 14 O -0.600 6.600 15 C -0.145 4.145 16 H 0.142 0.858 17 C -0.112 4.112 18 C 0.097 3.903 19 N -0.556 5.556 20 C 0.168 3.832 21 C -0.178 4.178 22 C -0.075 4.075 23 C -0.135 4.135 24 C -0.013 4.013 25 Cl -0.058 7.058 26 C -0.148 4.148 27 C 0.530 3.470 28 O -0.525 6.525 29 H 0.147 0.853 30 H 0.124 0.876 31 H 0.281 0.719 32 H 0.082 0.918 33 H 0.128 0.872 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.134 0.866 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.459 -10.128 -16.704 19.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.100 4.100 3 C 0.065 3.935 4 N -0.160 5.160 5 C -0.476 4.476 6 H 0.091 0.909 7 C -0.193 4.193 8 N -0.515 5.515 9 Si 0.802 3.198 10 H -0.203 1.203 11 H -0.188 1.188 12 H -0.196 1.196 13 C 0.268 3.732 14 O -0.484 6.484 15 C -0.170 4.170 16 H 0.159 0.841 17 C -0.150 4.150 18 C -0.023 4.023 19 N -0.279 5.279 20 C 0.074 3.926 21 C -0.199 4.199 22 C -0.094 4.094 23 C -0.154 4.154 24 C -0.040 4.040 25 Cl -0.029 7.029 26 C -0.169 4.169 27 C 0.318 3.682 28 O -0.401 6.401 29 H 0.163 0.837 30 H 0.141 0.859 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.146 0.854 34 H 0.139 0.861 35 H 0.132 0.868 36 H 0.152 0.848 37 H 0.174 0.826 38 H 0.175 0.825 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.490 -10.132 -16.339 19.232 hybrid contribution 0.667 0.497 1.151 1.420 sum 0.177 -9.635 -15.188 17.987 Atomic orbital electron populations 1.81051 1.13503 1.09868 1.10070 1.30386 0.95900 0.92013 0.91683 1.19317 0.78690 0.97869 0.97655 1.43368 1.55091 1.05552 1.11967 1.19448 1.40313 1.03628 0.84207 0.90856 1.26030 0.93125 0.96985 1.03143 1.69848 1.31913 1.14959 1.34757 0.85150 0.78567 0.78106 0.77986 1.20331 1.18819 1.19581 1.20237 0.80505 0.83649 0.88822 1.90520 1.52954 1.44524 1.60362 1.22149 0.96805 1.04150 0.93866 0.84082 1.22734 1.01767 0.92402 0.98102 1.22705 0.79996 1.00507 0.99113 1.45816 1.14277 1.28845 1.38966 1.17768 0.88205 0.94131 0.92538 1.21796 0.93727 1.02308 1.02044 1.21241 0.98685 0.95579 0.93887 1.21295 0.97277 0.95113 1.01741 1.20696 0.95989 0.90042 0.97254 1.98375 1.97658 1.32789 1.74067 1.20707 1.01247 0.95515 0.99428 1.20627 0.88737 0.79830 0.78968 1.90674 1.35162 1.49045 1.65190 0.83660 0.85853 0.90914 0.89945 0.85406 0.86099 0.86813 0.84828 0.82641 0.82505 0.82414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -17.83 18.54 20.01 0.37 -17.46 16 2 C 0.22 8.11 15.14 89.44 1.35 9.47 16 3 C 0.19 7.53 5.06 84.57 0.43 7.95 16 4 N -0.44 -21.05 2.53 -645.42 -1.63 -22.68 16 5 C -0.35 -18.60 9.02 84.04 0.76 -17.85 16 6 H 0.07 4.20 7.65 -2.91 -0.02 4.18 16 7 C 0.01 0.55 4.97 84.93 0.42 0.97 16 8 N -0.88 -43.65 11.26 21.66 0.24 -43.41 16 9 Si 0.98 40.34 29.60 68.60 2.03 42.37 16 10 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 12 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 13 C 0.48 22.04 6.46 87.66 0.57 22.60 16 14 O -0.60 -32.10 15.79 -3.09 -0.05 -32.15 16 15 C -0.15 -4.82 2.69 -11.55 -0.03 -4.85 16 16 H 0.14 3.97 5.64 -2.38 -0.01 3.95 16 17 C -0.11 -2.68 6.67 31.71 0.21 -2.47 16 18 C 0.10 1.74 6.54 86.90 0.57 2.31 16 19 N -0.56 -15.18 3.14 -627.37 -1.97 -17.14 16 20 C 0.17 4.41 6.59 38.15 0.25 4.66 16 21 C -0.18 -5.04 9.28 22.40 0.21 -4.83 16 22 C -0.08 -1.60 10.04 22.25 0.22 -1.37 16 23 C -0.13 -2.44 9.83 22.32 0.22 -2.22 16 24 C -0.01 -0.24 6.32 22.31 0.14 -0.10 16 25 Cl -0.06 -0.94 28.95 -2.72 -0.08 -1.02 16 26 C -0.15 -3.00 9.20 22.41 0.21 -2.79 16 27 C 0.53 18.91 7.34 87.90 0.64 19.56 16 28 O -0.53 -22.97 14.65 -3.06 -0.04 -23.01 16 29 H 0.15 6.20 5.35 -2.39 -0.01 6.19 16 30 H 0.12 4.17 6.47 -2.39 -0.02 4.15 16 31 H 0.28 12.97 8.31 -92.71 -0.77 12.20 16 32 H 0.08 2.38 7.11 -2.39 -0.02 2.37 16 33 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.11 1.51 7.20 -2.39 -0.02 1.50 16 36 H 0.13 4.62 5.27 -2.91 -0.02 4.61 16 37 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 39 H 0.16 2.39 6.73 -2.91 -0.02 2.37 16 Total: -1.00 -70.87 353.03 6.17 -64.70 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 1.13 Total: 18.78 kcal Atomic # 6 Polarization: 24.87 SS G_CDS: 6.17 Total: 31.04 kcal Atomic # 7 Polarization: -97.71 SS G_CDS: -2.99 Total: -100.70 kcal Atomic # 8 Polarization: -55.07 SS G_CDS: -0.09 Total: -55.17 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -70.87 6.17 -64.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173372742.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.206 kcal (2) G-P(sol) polarization free energy of solvation -70.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds