Wall clock time and date at job start Wed Apr 1 2020 04:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00258 * 2 1 4 4 H 1.48503 * 109.46849 * 239.99422 * 3 2 1 5 5 H 1.48499 * 109.46989 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47265 * 119.99657 * 3 2 1 7 7 C 1.37886 * 119.99475 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99571 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00168 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46911 * 179.97438 * 9 7 2 11 11 S 1.81407 * 109.47030 * 179.97438 * 10 9 7 12 12 O 1.42101 * 110.53794 * 68.37654 * 11 10 9 13 13 O 1.42099 * 110.54341 * 291.62948 * 11 10 9 14 14 N 1.65592 * 104.44854 * 180.02562 * 11 10 9 15 15 C 1.34777 * 120.00169 * 65.00503 * 14 11 10 16 16 O 1.21278 * 119.99854 * 359.97438 * 15 14 11 17 17 C 1.50703 * 120.00161 * 179.97438 * 15 14 11 18 18 C 1.53000 * 109.46912 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.46912 * 179.97438 * 18 17 15 20 20 C 1.38205 * 119.99664 * 264.72412 * 19 18 17 21 21 C 1.38432 * 119.99473 * 179.76905 * 20 19 18 22 22 F 1.35106 * 119.99999 * 180.27208 * 21 20 19 23 23 C 1.38472 * 120.00308 * 0.53097 * 21 20 19 24 24 C 1.38165 * 119.99635 * 359.72209 * 23 21 20 25 25 C 1.38420 * 120.00085 * 85.00081 * 19 18 17 26 26 F 1.35103 * 120.00346 * 359.97438 * 25 19 18 27 27 H 0.97004 * 119.99729 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47437 * 60.00006 * 9 7 2 29 29 H 1.09004 * 109.47310 * 299.99491 * 9 7 2 30 30 H 1.08996 * 109.47054 * 60.00384 * 10 9 7 31 31 H 1.08991 * 109.47222 * 299.99688 * 10 9 7 32 32 H 0.97005 * 120.00368 * 244.99952 * 14 11 10 33 33 H 1.09001 * 109.46980 * 59.99654 * 17 15 14 34 34 H 1.08992 * 109.47158 * 299.99760 * 17 15 14 35 35 H 1.09002 * 109.47398 * 300.00078 * 18 17 15 36 36 H 1.09001 * 109.47194 * 60.00258 * 18 17 15 37 37 H 1.07999 * 120.00330 * 0.02562 * 20 19 18 38 38 H 1.08000 * 120.00156 * 179.70008 * 23 21 20 39 39 H 1.07995 * 119.99700 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 16 1.3380 -5.2331 0.0013 12 8 0.6637 -5.4200 -1.2355 13 8 0.6643 -5.4194 1.2385 14 7 2.5201 -6.3928 0.0020 15 6 3.3465 -6.5121 1.0599 16 8 3.2247 -5.7699 2.0113 17 6 4.4219 -7.5679 1.0608 18 6 5.2132 -7.4887 2.3679 19 6 6.2882 -8.5449 2.3690 20 6 6.0568 -9.7657 2.9740 21 6 7.0426 -10.7376 2.9708 22 9 6.8146 -11.9330 3.5575 23 6 8.2644 -10.4826 2.3711 24 6 8.4975 -9.2602 1.7708 25 6 7.5094 -8.2901 1.7690 26 9 7.7374 -7.0949 1.1820 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6239 -2.5568 0.8904 30 1 2.8717 -3.6045 0.8905 31 1 2.8717 -3.6045 -0.8894 32 1 2.6178 -6.9863 -0.7591 33 1 5.0941 -7.4024 0.2188 34 1 3.9641 -8.5530 0.9719 35 1 5.6712 -6.5035 2.4563 36 1 4.5412 -7.6540 3.2100 37 1 5.1055 -9.9630 3.4457 38 1 9.0352 -11.2391 2.3729 39 1 9.4505 -9.0612 1.3034 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181280685.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:16 Heat of formation + Delta-G solvation = -192.024736 kcal Electronic energy + Delta-G solvation = -27197.518320 eV Core-core repulsion = 22674.909124 eV Total energy + Delta-G solvation = -4522.609196 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.38539 -49.33735 -40.31588 -39.35515 -36.72799 -35.64015 -34.60926 -34.49508 -33.89916 -31.19454 -31.02703 -30.04542 -25.83997 -25.56875 -23.49219 -22.38764 -21.67593 -21.13102 -19.37507 -18.21764 -17.98864 -17.72611 -17.70943 -17.30772 -16.55075 -16.30701 -16.10407 -15.76885 -15.33902 -15.17473 -14.90920 -14.82813 -14.61538 -14.51407 -14.05923 -13.68951 -13.47641 -13.27776 -13.01755 -12.92771 -12.54246 -12.39710 -12.06660 -11.81537 -11.74329 -11.63729 -11.53621 -11.43521 -11.07133 -11.01024 -10.89458 -10.44766 -10.39693 -10.29020 -9.72442 -9.64451 -9.19633 -9.01666 -8.49574 -6.12098 -4.17599 0.39609 0.46094 0.52104 2.02595 2.67247 2.84164 3.28555 3.33027 3.35204 3.60833 3.68700 3.86135 4.03700 4.11607 4.28495 4.37544 4.44450 4.50558 4.60576 4.66363 4.70033 4.89967 5.12770 5.20992 5.23126 5.23857 5.42057 5.47651 5.52313 5.58500 5.71249 5.73506 5.75736 6.26582 6.44700 6.59075 7.27825 7.34575 7.40241 7.80758 8.16648 8.85111 9.46855 10.98966 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.015995 B = 0.002292 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.108062 B =12214.849297 C =13380.376115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.902 3.098 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.575 4.575 11 S 2.565 3.435 12 O -0.955 6.955 13 O -0.938 6.938 14 N -1.060 6.060 15 C 0.534 3.466 16 O -0.487 6.487 17 C -0.138 4.138 18 C -0.074 4.074 19 C -0.085 4.085 20 C -0.121 4.121 21 C 0.091 3.909 22 F -0.135 7.135 23 C -0.129 4.129 24 C -0.122 4.122 25 C 0.094 3.906 26 F -0.129 7.129 27 H 0.266 0.734 28 H 0.034 0.966 29 H 0.036 0.964 30 H 0.131 0.869 31 H 0.121 0.879 32 H 0.429 0.571 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.470 -23.571 2.096 29.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.009 4.009 10 C -0.710 4.710 11 S 2.665 3.335 12 O -0.945 6.945 13 O -0.928 6.928 14 N -0.821 5.821 15 C 0.320 3.680 16 O -0.358 6.358 17 C -0.180 4.180 18 C -0.112 4.112 19 C -0.087 4.087 20 C -0.140 4.140 21 C 0.072 3.928 22 F -0.114 7.114 23 C -0.148 4.148 24 C -0.141 4.141 25 C 0.074 3.926 26 F -0.107 7.107 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.149 0.851 31 H 0.140 0.860 32 H 0.264 0.736 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 16.277 -23.149 2.826 28.439 hybrid contribution 1.122 0.774 -0.517 1.457 sum 17.399 -22.375 2.308 28.438 Atomic orbital electron populations 1.69945 1.06112 1.27347 1.49441 1.25068 0.95001 0.99553 0.94859 0.86500 0.79472 0.82398 0.78733 1.20078 1.21065 1.20020 1.20937 0.93066 0.89592 1.52335 0.92014 1.18984 0.92616 0.90319 0.99010 1.30335 1.13705 1.16176 1.10764 1.06720 0.74996 0.77284 0.74464 1.93591 1.70516 1.85303 1.45124 1.93596 1.70316 1.84380 1.44554 1.55444 1.49319 1.50408 1.26893 1.20542 0.81585 0.84957 0.80922 1.90926 1.69425 1.43005 1.32473 1.21778 0.96608 0.99094 1.00512 1.20417 0.95048 0.97841 0.97877 1.19766 0.94525 0.95940 0.98431 1.21003 1.00040 0.91867 1.01093 1.17672 0.95057 0.82088 0.97997 1.91536 1.95001 1.43023 1.81796 1.21013 0.96512 0.98076 0.99190 1.21022 0.99691 0.92412 1.01002 1.17581 0.94494 0.82384 0.98123 1.91551 1.94863 1.42841 1.81466 0.92448 0.94775 0.94579 0.85062 0.86044 0.73637 0.87568 0.87552 0.88646 0.88615 0.83401 0.83716 0.83545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.03 0.77 4.98 -27.88 -0.14 0.63 16 10 C -0.58 -11.29 5.82 37.16 0.22 -11.07 16 11 S 2.57 45.56 5.11 -107.50 -0.55 45.01 16 12 O -0.95 -18.61 18.08 -57.54 -1.04 -19.65 16 13 O -0.94 -20.20 17.04 -64.79 -1.10 -21.30 16 14 N -1.06 -12.53 5.60 31.22 0.17 -12.36 16 15 C 0.53 6.44 7.57 -10.98 -0.08 6.36 16 16 O -0.49 -7.93 14.08 -11.59 -0.16 -8.10 16 17 C -0.14 -1.03 5.68 -27.88 -0.16 -1.19 16 18 C -0.07 -0.60 4.41 -27.88 -0.12 -0.73 16 19 C -0.09 -0.62 5.14 -104.57 -0.54 -1.15 16 20 C -0.12 -0.79 9.66 -39.52 -0.38 -1.17 16 21 C 0.09 0.62 7.30 -39.42 -0.29 0.33 16 22 F -0.14 -1.05 17.27 2.25 0.04 -1.02 16 23 C -0.13 -0.70 10.02 -39.52 -0.40 -1.10 16 24 C -0.12 -0.69 10.02 -39.52 -0.40 -1.09 16 25 C 0.09 0.69 7.24 -39.43 -0.29 0.41 16 26 F -0.13 -1.14 16.57 2.25 0.04 -1.11 16 27 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.13 2.53 7.19 -51.93 -0.37 2.15 16 31 H 0.12 2.05 8.14 -51.93 -0.42 1.63 16 32 H 0.43 3.22 8.79 -34.47 -0.30 2.91 16 33 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.10 0.89 7.75 -51.93 -0.40 0.49 16 36 H 0.10 0.78 8.01 -51.93 -0.42 0.36 16 37 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.15 0.49 8.06 -52.49 -0.42 0.06 16 39 H 0.15 0.54 8.06 -52.49 -0.42 0.12 16 LS Contribution 362.97 15.07 5.47 5.47 Total: -1.00 -37.28 362.97 -8.82 -46.10 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -4.42 Total: -0.49 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: -2.98 Total: -23.05 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.91 Total: -38.23 kcal Atomic # 8 Polarization: -46.75 SS G_CDS: -2.31 Total: -49.06 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.08 Total: -2.12 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 45.56 SS G_CDS: -0.55 Total: 45.01 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.28 -8.82 -46.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181280685.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.929 kcal (2) G-P(sol) polarization free energy of solvation -37.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds