Wall clock time and date at job start Wed Apr 1 2020 04:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00258 * 2 1 4 4 H 1.48503 * 109.46849 * 239.99422 * 3 2 1 5 5 H 1.48499 * 109.46989 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47265 * 119.99657 * 3 2 1 7 7 C 1.37886 * 119.99475 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99571 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00168 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46911 * 179.97438 * 9 7 2 11 11 S 1.81407 * 109.47030 * 179.97438 * 10 9 7 12 12 O 1.42101 * 110.53794 * 68.37654 * 11 10 9 13 13 O 1.42099 * 110.54341 * 291.62948 * 11 10 9 14 14 N 1.65592 * 104.44854 * 180.02562 * 11 10 9 15 15 C 1.34777 * 120.00169 * 65.00503 * 14 11 10 16 16 O 1.21278 * 119.99854 * 359.97438 * 15 14 11 17 17 C 1.50703 * 120.00161 * 179.97438 * 15 14 11 18 18 C 1.53000 * 109.46912 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.46912 * 179.97438 * 18 17 15 20 20 C 1.38205 * 119.99664 * 264.72412 * 19 18 17 21 21 C 1.38432 * 119.99473 * 179.76905 * 20 19 18 22 22 F 1.35106 * 119.99999 * 180.27208 * 21 20 19 23 23 C 1.38472 * 120.00308 * 0.53097 * 21 20 19 24 24 C 1.38165 * 119.99635 * 359.72209 * 23 21 20 25 25 C 1.38420 * 120.00085 * 85.00081 * 19 18 17 26 26 F 1.35103 * 120.00346 * 359.97438 * 25 19 18 27 27 H 0.97004 * 119.99729 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47437 * 60.00006 * 9 7 2 29 29 H 1.09004 * 109.47310 * 299.99491 * 9 7 2 30 30 H 1.08996 * 109.47054 * 60.00384 * 10 9 7 31 31 H 1.08991 * 109.47222 * 299.99688 * 10 9 7 32 32 H 0.97005 * 120.00368 * 244.99952 * 14 11 10 33 33 H 1.09001 * 109.46980 * 59.99654 * 17 15 14 34 34 H 1.08992 * 109.47158 * 299.99760 * 17 15 14 35 35 H 1.09002 * 109.47398 * 300.00078 * 18 17 15 36 36 H 1.09001 * 109.47194 * 60.00258 * 18 17 15 37 37 H 1.07999 * 120.00330 * 0.02562 * 20 19 18 38 38 H 1.08000 * 120.00156 * 179.70008 * 23 21 20 39 39 H 1.07995 * 119.99700 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 16 1.3380 -5.2331 0.0013 12 8 0.6637 -5.4200 -1.2355 13 8 0.6643 -5.4194 1.2385 14 7 2.5201 -6.3928 0.0020 15 6 3.3465 -6.5121 1.0599 16 8 3.2247 -5.7699 2.0113 17 6 4.4219 -7.5679 1.0608 18 6 5.2132 -7.4887 2.3679 19 6 6.2882 -8.5449 2.3690 20 6 6.0568 -9.7657 2.9740 21 6 7.0426 -10.7376 2.9708 22 9 6.8146 -11.9330 3.5575 23 6 8.2644 -10.4826 2.3711 24 6 8.4975 -9.2602 1.7708 25 6 7.5094 -8.2901 1.7690 26 9 7.7374 -7.0949 1.1820 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6239 -2.5568 0.8904 30 1 2.8717 -3.6045 0.8905 31 1 2.8717 -3.6045 -0.8894 32 1 2.6178 -6.9863 -0.7591 33 1 5.0941 -7.4024 0.2188 34 1 3.9641 -8.5530 0.9719 35 1 5.6712 -6.5035 2.4563 36 1 4.5412 -7.6540 3.2100 37 1 5.1055 -9.9630 3.4457 38 1 9.0352 -11.2391 2.3729 39 1 9.4505 -9.0612 1.3034 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181280685.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:15 Heat of formation + Delta-G solvation = -218.227026 kcal Electronic energy + Delta-G solvation = -27198.654537 eV Core-core repulsion = 22674.909124 eV Total energy + Delta-G solvation = -4523.745413 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.92050 -49.91425 -41.31832 -39.89847 -38.29012 -37.22453 -35.96434 -35.60310 -35.20592 -33.18345 -31.54150 -30.59056 -27.66042 -26.44731 -23.98976 -23.69136 -23.03541 -21.91361 -20.71093 -19.33880 -18.95434 -18.58931 -18.36877 -18.24585 -17.97008 -17.39824 -16.88283 -16.66533 -16.57349 -16.54708 -16.33677 -15.79003 -15.37767 -15.23458 -15.18092 -14.66749 -14.48178 -14.35715 -13.95351 -13.78464 -13.62221 -13.60257 -13.49206 -13.36721 -13.25394 -12.93870 -12.85351 -12.62062 -12.33071 -12.24732 -12.10141 -12.02928 -11.95009 -11.75749 -11.39596 -11.07007 -10.65667 -10.11914 -9.53170 -8.28030 -6.42115 -0.99627 -0.08108 0.03468 1.02709 1.39470 1.43398 1.44731 1.51590 2.34268 2.36402 2.57343 2.97161 3.05242 3.14142 3.20132 3.27364 3.61191 3.69650 3.78388 3.94858 4.04245 4.04915 4.07971 4.19244 4.21332 4.58485 4.68834 4.70501 4.77140 4.98390 5.02462 5.04791 5.13948 5.21871 5.22057 5.23165 5.65338 5.69967 5.79380 6.03116 6.45292 6.70270 7.27676 8.84142 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.015995 B = 0.002292 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.108062 B =12214.849297 C =13380.376115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.003 4.003 3 Si 0.975 3.025 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.541 4.541 8 H 0.074 0.926 9 C 0.023 3.977 10 C -0.580 4.580 11 S 2.600 3.400 12 O -0.972 6.972 13 O -0.979 6.979 14 N -1.037 6.037 15 C 0.532 3.468 16 O -0.531 6.531 17 C -0.128 4.128 18 C -0.075 4.075 19 C -0.088 4.088 20 C -0.122 4.122 21 C 0.079 3.921 22 F -0.143 7.143 23 C -0.122 4.122 24 C -0.118 4.118 25 C 0.079 3.921 26 F -0.140 7.140 27 H 0.268 0.732 28 H 0.015 0.985 29 H 0.004 0.996 30 H 0.134 0.866 31 H 0.151 0.849 32 H 0.452 0.548 33 H 0.133 0.867 34 H 0.141 0.859 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.158 0.842 38 H 0.168 0.832 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.144 -24.995 1.323 32.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.202 4.202 3 Si 0.798 3.202 4 H -0.185 1.185 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.580 4.580 8 H 0.092 0.908 9 C -0.016 4.016 10 C -0.713 4.713 11 S 2.699 3.301 12 O -0.963 6.963 13 O -0.969 6.969 14 N -0.805 5.805 15 C 0.321 3.679 16 O -0.405 6.405 17 C -0.169 4.169 18 C -0.113 4.113 19 C -0.089 4.089 20 C -0.141 4.141 21 C 0.060 3.940 22 F -0.122 7.122 23 C -0.140 4.140 24 C -0.136 4.136 25 C 0.060 3.940 26 F -0.119 7.119 27 H 0.077 0.923 28 H 0.033 0.967 29 H 0.023 0.977 30 H 0.152 0.848 31 H 0.169 0.831 32 H 0.292 0.708 33 H 0.151 0.849 34 H 0.158 0.842 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.175 0.825 38 H 0.185 0.815 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 18.962 -24.584 2.017 31.112 hybrid contribution 0.344 1.086 -0.254 1.167 sum 19.306 -23.498 1.763 30.462 Atomic orbital electron populations 1.70089 1.08002 1.28474 1.50612 1.26124 0.95923 1.03877 0.94272 0.85348 0.78159 0.77217 0.79445 1.18492 1.20733 1.19110 1.21447 0.93909 0.90771 1.51914 0.90830 1.18818 0.93463 0.92752 0.96593 1.30244 1.12853 1.15777 1.12390 1.05326 0.74817 0.76869 0.73082 1.93562 1.71556 1.85506 1.45630 1.93546 1.71950 1.84917 1.46461 1.54862 1.48118 1.49286 1.28187 1.21472 0.81652 0.85093 0.79700 1.90922 1.70492 1.44949 1.34139 1.21893 0.95231 0.98654 1.01125 1.20362 0.95315 0.97433 0.98189 1.19606 0.94296 0.95809 0.99187 1.21092 1.00580 0.91564 1.00825 1.17866 0.95758 0.81894 0.98502 1.91519 1.95112 1.43492 1.82048 1.21275 0.96445 0.98396 0.97915 1.21249 1.00064 0.91849 1.00477 1.17816 0.95131 0.82403 0.98674 1.91522 1.94965 1.43640 1.81775 0.92288 0.96679 0.97730 0.84795 0.83117 0.70773 0.84925 0.84156 0.90334 0.89084 0.82460 0.81496 0.81485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.32 13.29 21.45 0.28 -57.03 16 2 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 3 Si 0.98 43.97 29.54 68.60 2.03 46.00 16 4 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.54 -30.73 9.11 25.60 0.23 -30.49 16 8 H 0.07 3.88 7.74 -2.91 -0.02 3.85 16 9 C 0.02 1.22 4.98 29.85 0.15 1.36 16 10 C -0.58 -22.91 5.82 71.98 0.42 -22.49 16 11 S 2.60 92.17 5.11 -56.49 -0.29 91.88 16 12 O -0.97 -37.53 18.08 -127.65 -2.31 -39.84 16 13 O -0.98 -43.05 17.04 -120.71 -2.06 -45.10 16 14 N -1.04 -22.57 5.60 -173.53 -0.97 -23.54 16 15 C 0.53 11.97 7.57 87.66 0.66 12.64 16 16 O -0.53 -17.22 14.08 13.37 0.19 -17.03 16 17 C -0.13 -1.55 5.68 29.85 0.17 -1.38 16 18 C -0.08 -1.12 4.41 29.85 0.13 -0.99 16 19 C -0.09 -1.10 5.14 -19.83 -0.10 -1.21 16 20 C -0.12 -1.36 9.66 22.31 0.22 -1.15 16 21 C 0.08 0.91 7.30 22.37 0.16 1.07 16 22 F -0.14 -2.00 17.27 44.97 0.78 -1.22 16 23 C -0.12 -0.99 10.02 22.31 0.22 -0.77 16 24 C -0.12 -1.02 10.02 22.31 0.22 -0.80 16 25 C 0.08 1.02 7.24 22.37 0.16 1.18 16 26 F -0.14 -2.27 16.57 44.97 0.74 -1.53 16 27 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 28 H 0.01 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.13 5.22 7.19 -2.39 -0.02 5.20 16 31 H 0.15 4.93 8.14 -2.39 -0.02 4.91 16 32 H 0.45 5.40 8.79 -96.74 -0.85 4.55 16 33 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 1.44 7.75 -2.39 -0.02 1.42 16 36 H 0.09 1.42 8.01 -2.39 -0.02 1.40 16 37 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 38 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 39 H 0.17 0.71 8.06 -2.91 -0.02 0.68 16 Total: -1.00 -83.49 362.97 1.76 -81.72 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 0.25 Total: 8.46 kcal Atomic # 6 Polarization: -45.87 SS G_CDS: 3.11 Total: -42.76 kcal Atomic # 7 Polarization: -79.89 SS G_CDS: -0.69 Total: -80.58 kcal Atomic # 8 Polarization: -97.80 SS G_CDS: -4.18 Total: -101.97 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 1.52 Total: -2.75 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: 92.17 SS G_CDS: -0.29 Total: 91.88 kcal Total: -83.49 1.76 -81.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181280685.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.502 kcal (2) G-P(sol) polarization free energy of solvation -83.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds