Wall clock time and date at job start Wed Apr 1 2020 04:31:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86801 * 119.99806 * 2 1
4 4 H 1.48498 * 109.47227 * 239.99962 * 3 2 1
5 5 H 1.48500 * 109.47247 * 0.02562 * 3 2 1
6 6 H 1.48499 * 109.46887 * 120.00256 * 3 2 1
7 7 C 1.37871 * 120.00196 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00282 * 179.97438 * 7 2 1
9 9 C 1.50710 * 119.99965 * 359.97438 * 7 2 1
10 10 C 1.52990 * 109.46970 * 180.02562 * 9 7 2
11 11 S 1.81401 * 109.46822 * 179.97438 * 10 9 7
12 12 O 1.42101 * 110.54355 * 68.37674 * 11 10 9
13 13 O 1.42100 * 110.54379 * 291.62480 * 11 10 9
14 14 N 1.65605 * 104.44954 * 179.97438 * 11 10 9
15 15 C 1.34784 * 119.99662 * 65.00280 * 14 11 10
16 16 O 1.21275 * 119.99818 * 359.97438 * 15 14 11
17 17 C 1.50703 * 119.99539 * 179.97438 * 15 14 11
18 18 C 1.53005 * 109.46579 * 179.97438 * 17 15 14
19 19 C 1.50703 * 109.46579 * 179.97438 * 18 17 15
20 20 C 1.38256 * 120.00097 * 264.97662 * 19 18 17
21 21 C 1.38215 * 120.07338 * 180.02562 * 20 19 18
22 22 C 1.38259 * 120.06411 * 359.97438 * 21 20 19
23 23 C 1.38360 * 120.00548 * 0.02562 * 22 21 20
24 24 F 1.35100 * 120.04001 * 179.97438 * 23 22 21
25 25 C 1.38365 * 119.99959 * 85.00735 * 19 18 17
26 26 F 1.35108 * 120.03441 * 0.24624 * 25 19 18
27 27 H 0.97002 * 120.00151 * 359.97438 * 1 2 3
28 28 H 1.09004 * 109.46525 * 60.00042 * 9 7 2
29 29 H 1.09001 * 109.46622 * 300.00664 * 9 7 2
30 30 H 1.09004 * 109.47589 * 60.00538 * 10 9 7
31 31 H 1.09001 * 109.47864 * 299.99748 * 10 9 7
32 32 H 0.96994 * 120.00472 * 245.00055 * 14 11 10
33 33 H 1.09003 * 109.47009 * 60.00435 * 17 15 14
34 34 H 1.08997 * 109.47090 * 299.99711 * 17 15 14
35 35 H 1.09003 * 109.46743 * 60.00702 * 18 17 15
36 36 H 1.08997 * 109.47525 * 299.99875 * 18 17 15
37 37 H 1.08000 * 119.96449 * 0.02753 * 20 19 18
38 38 H 1.07997 * 119.96637 * 179.97438 * 21 20 19
39 39 H 1.08003 * 119.99482 * 180.02562 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.1028 1.6965 -1.2125
5 1 1.2841 2.7465 0.0006
6 1 3.1028 1.6964 1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2510 -2.4992 -0.0005
10 6 2.2452 -3.6620 -0.0005
11 16 1.3382 -5.2330 0.0002
12 8 0.6638 -5.4200 -1.2365
13 8 0.6647 -5.4193 1.2375
14 7 2.5204 -6.3926 -0.0006
15 6 3.3477 -6.5123 1.0568
16 8 3.2265 -5.7705 2.0085
17 6 4.4231 -7.5681 1.0563
18 6 5.2155 -7.4894 2.3629
19 6 6.2905 -8.5455 2.3626
20 6 6.0578 -9.7690 2.9630
21 6 7.0429 -10.7385 2.9641
22 6 8.2629 -10.4870 2.3644
23 6 8.4990 -9.2636 1.7627
24 9 9.6912 -9.0169 1.1769
25 6 7.5107 -8.2905 1.7622
26 9 7.7409 -7.0932 1.1802
27 1 -0.4850 0.8400 0.0004
28 1 0.6240 -2.5566 -0.8904
29 1 0.6246 -2.5570 0.8896
30 1 2.8719 -3.6043 0.8895
31 1 2.8719 -3.6043 -0.8905
32 1 2.6176 -6.9858 -0.7618
33 1 5.0948 -7.4021 0.2140
34 1 3.9652 -8.5532 0.9674
35 1 4.5441 -7.6551 3.2054
36 1 5.6735 -6.5043 2.4514
37 1 5.1052 -9.9674 3.4316
38 1 6.8593 -11.6934 3.4340
39 1 9.0317 -11.2455 2.3656
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000181285609.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:31:56
Heat of formation + Delta-G solvation = -190.687194 kcal
Electronic energy + Delta-G solvation = -27308.783788 eV
Core-core repulsion = 22786.232592 eV
Total energy + Delta-G solvation = -4522.551196 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.084 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-49.83715 -48.91489 -40.32696 -39.42417 -36.72788 -35.64061 -34.54236 -34.49020
-33.89562 -31.18689 -30.78602 -30.34765 -25.83543 -25.56461 -23.29849 -22.51871
-21.68058 -21.14997 -19.37425 -18.35816 -17.98950 -17.74740 -17.62396 -17.11192
-16.68721 -16.53308 -16.09796 -15.36450 -15.34211 -15.31880 -15.12499 -14.85010
-14.69168 -14.53469 -13.98276 -13.73027 -13.45389 -13.16808 -13.08156 -12.56721
-12.50524 -12.43650 -12.13314 -11.81226 -11.74327 -11.64177 -11.62373 -11.46742
-11.06649 -11.00727 -10.89278 -10.44391 -10.39278 -10.28520 -9.71494 -9.39028
-9.21286 -9.18924 -8.49153 -6.11679 -4.17212 0.41277 0.44497 0.51846
2.02673 2.67717 2.86703 3.29152 3.30633 3.33530 3.35829 3.81217
3.93916 4.04571 4.19124 4.24908 4.38054 4.42978 4.54083 4.57053
4.66160 4.70752 4.90567 5.13274 5.16794 5.23566 5.27521 5.36158
5.48217 5.58827 5.65351 5.71672 5.73033 5.81271 6.26121 6.45073
6.59204 7.28119 7.34815 7.40258 7.81222 8.17002 8.85530 9.47348
10.99378
Molecular weight = 347.08amu
Principal moments of inertia in cm(-1)
A = 0.014394 B = 0.002386 C = 0.002144
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1944.791347 B =11731.388221 C =13056.763236
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.891 5.891
2 C 0.058 3.942
3 Si 0.902 3.098
4 H -0.275 1.275
5 H -0.285 1.285
6 H -0.275 1.275
7 C -0.520 4.520
8 H 0.062 0.938
9 C 0.030 3.970
10 C -0.575 4.575
11 S 2.565 3.435
12 O -0.955 6.955
13 O -0.938 6.938
14 N -1.060 6.060
15 C 0.534 3.466
16 O -0.487 6.487
17 C -0.139 4.139
18 C -0.074 4.074
19 C -0.087 4.087
20 C -0.097 4.097
21 C -0.098 4.098
22 C -0.131 4.131
23 C 0.068 3.932
24 F -0.129 7.129
25 C 0.070 3.930
26 F -0.123 7.123
27 H 0.266 0.734
28 H 0.034 0.966
29 H 0.036 0.964
30 H 0.131 0.869
31 H 0.121 0.879
32 H 0.429 0.571
33 H 0.105 0.895
34 H 0.107 0.893
35 H 0.097 0.903
36 H 0.093 0.907
37 H 0.143 0.857
38 H 0.141 0.859
39 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.791 -25.280 3.460 30.007
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.529 5.529
2 C -0.145 4.145
3 Si 0.729 3.271
4 H -0.201 1.201
5 H -0.211 1.211
6 H -0.200 1.200
7 C -0.559 4.559
8 H 0.080 0.920
9 C -0.009 4.009
10 C -0.710 4.710
11 S 2.666 3.334
12 O -0.945 6.945
13 O -0.928 6.928
14 N -0.821 5.821
15 C 0.320 3.680
16 O -0.358 6.358
17 C -0.180 4.180
18 C -0.112 4.112
19 C -0.088 4.088
20 C -0.115 4.115
21 C -0.116 4.116
22 C -0.150 4.150
23 C 0.048 3.952
24 F -0.107 7.107
25 C 0.050 3.950
26 F -0.101 7.101
27 H 0.076 0.924
28 H 0.052 0.948
29 H 0.054 0.946
30 H 0.149 0.851
31 H 0.140 0.860
32 H 0.264 0.736
33 H 0.123 0.877
34 H 0.125 0.875
35 H 0.116 0.884
36 H 0.112 0.888
37 H 0.161 0.839
38 H 0.159 0.841
39 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges 14.661 -24.796 4.140 29.102
hybrid contribution 1.431 1.084 -0.769 1.953
sum 16.092 -23.711 3.370 28.854
Atomic orbital electron populations
1.69943 1.06108 1.27348 1.49472 1.25060 0.94998 0.99545 0.94852
0.86503 0.79476 0.82398 0.78750 1.20069 1.21060 1.20018 1.20941
0.93076 0.89597 1.52314 0.92012 1.18985 0.92612 0.90323 0.99008
1.30336 1.13704 1.16179 1.10780 1.06716 0.74988 0.77280 0.74462
1.93591 1.70529 1.85295 1.45124 1.93595 1.70312 1.84390 1.44553
1.55446 1.49277 1.50432 1.26908 1.20544 0.81572 0.84958 0.80928
1.90925 1.69443 1.43009 1.32459 1.21784 0.96587 0.99109 1.00530
1.20417 0.94968 0.97903 0.97880 1.19888 0.93463 0.97047 0.98423
1.21132 1.00291 0.91579 0.98477 1.21112 0.92115 1.00032 0.98351
1.21124 0.99410 0.95310 0.99141 1.17722 0.81905 0.95098 1.00472
1.91545 1.42745 1.94627 1.81814 1.17600 0.94579 0.82159 1.00658
1.91560 1.94795 1.42067 1.81721 0.92449 0.94762 0.94582 0.85060
0.86041 0.73634 0.87651 0.87481 0.88445 0.88817 0.83909 0.84088
0.83740
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16
2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16
3 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16
4 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16
5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16
6 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16
7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16
8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16
9 C 0.03 0.78 4.98 -27.88 -0.14 0.64 16
10 C -0.58 -11.36 5.82 37.15 0.22 -11.15 16
11 S 2.57 45.61 5.11 -107.50 -0.55 45.06 16
12 O -0.95 -18.63 18.08 -57.54 -1.04 -19.67 16
13 O -0.94 -20.14 17.04 -64.78 -1.10 -21.24 16
14 N -1.06 -12.56 5.60 31.22 0.17 -12.39 16
15 C 0.53 6.46 7.57 -10.98 -0.08 6.37 16
16 O -0.49 -7.94 14.08 -11.55 -0.16 -8.10 16
17 C -0.14 -1.04 5.68 -27.88 -0.16 -1.20 16
18 C -0.07 -0.60 4.41 -27.88 -0.12 -0.73 16
19 C -0.09 -0.63 5.14 -104.57 -0.54 -1.17 16
20 C -0.10 -0.49 9.68 -39.58 -0.38 -0.87 16
21 C -0.10 -0.41 10.04 -39.58 -0.40 -0.81 16
22 C -0.13 -0.72 10.02 -39.53 -0.40 -1.11 16
23 C 0.07 0.56 7.31 -39.37 -0.29 0.27 16
24 F -0.13 -1.26 17.18 2.25 0.04 -1.22 16
25 C 0.07 0.62 7.25 -39.37 -0.29 0.34 16
26 F -0.12 -1.33 16.48 2.25 0.04 -1.29 16
27 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16
28 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16
29 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16
30 H 0.13 2.55 7.19 -51.92 -0.37 2.17 16
31 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16
32 H 0.43 3.24 8.79 -34.48 -0.30 2.93 16
33 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16
34 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16
35 H 0.10 0.76 8.01 -51.93 -0.42 0.34 16
36 H 0.09 0.91 7.75 -51.93 -0.40 0.50 16
37 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16
38 H 0.14 0.22 8.06 -52.49 -0.42 -0.20 16
39 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16
LS Contribution 362.86 15.07 5.47 5.47
Total: -1.00 -37.90 362.86 -8.82 -46.72
By element:
Atomic # 1 Polarization: 3.29 SS G_CDS: -4.42 Total: -1.13 kcal
Atomic # 6 Polarization: -19.76 SS G_CDS: -2.99 Total: -22.74 kcal
Atomic # 7 Polarization: -39.25 SS G_CDS: 0.91 Total: -38.34 kcal
Atomic # 8 Polarization: -46.71 SS G_CDS: -2.31 Total: -49.01 kcal
Atomic # 9 Polarization: -2.59 SS G_CDS: 0.08 Total: -2.51 kcal
Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal
Atomic # 16 Polarization: 45.61 SS G_CDS: -0.55 Total: 45.06 kcal
Total LS contribution 5.47 Total: 5.47 kcal
Total: -37.90 -8.82 -46.72 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000181285609.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -143.965 kcal
(2) G-P(sol) polarization free energy of solvation -37.897 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.863 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.722 kcal
(6) G-S(sol) free energy of system = (1) + (5) -190.687 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds