Wall clock time and date at job start Wed Apr 1 2020 04:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86803 * 120.00240 * 2 1 4 4 H 1.48497 * 109.47188 * 239.99965 * 3 2 1 5 5 H 1.48497 * 109.47130 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46889 * 120.00028 * 3 2 1 7 7 C 1.38656 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00158 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99841 * 359.97438 * 7 2 1 10 10 C 1.35746 * 117.00055 * 185.05854 * 9 7 2 11 11 C 1.38897 * 120.07011 * 354.48546 * 10 9 7 12 12 C 1.38081 * 119.93311 * 179.97438 * 11 10 9 13 13 C 1.38328 * 120.06458 * 359.75066 * 12 11 10 14 14 C 1.38273 * 120.14125 * 0.50918 * 13 12 11 15 15 C 1.50694 * 119.96519 * 179.77004 * 14 13 12 16 16 C 1.50703 * 109.46973 * 269.71878 * 15 14 13 17 17 O 1.21278 * 120.00017 * 0.02562 * 16 15 14 18 18 N 1.34772 * 120.00071 * 180.02562 * 16 15 14 19 19 N 1.40098 * 120.00160 * 180.02562 * 18 16 15 20 20 C 1.39013 * 120.00164 * 179.97438 * 19 18 16 21 21 C 1.39083 * 119.69790 * 179.97438 * 20 19 18 22 22 C 1.38449 * 119.08031 * 180.27917 * 21 20 19 23 23 Cl 1.73598 * 120.76181 * 179.72471 * 22 21 20 24 24 C 1.39030 * 118.47522 * 359.43883 * 22 21 20 25 25 C 1.37968 * 119.31112 * 0.56280 * 24 22 21 26 26 N 1.31988 * 120.87258 * 359.70201 * 25 24 22 27 27 C 1.38119 * 120.06780 * 359.48478 * 14 13 12 28 28 H 0.97002 * 119.99446 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.03232 * 359.95959 * 11 10 9 30 30 H 1.07995 * 119.96647 * 180.02562 * 12 11 10 31 31 H 1.08001 * 119.92756 * 180.27498 * 13 12 11 32 32 H 1.09004 * 109.47412 * 149.72246 * 15 14 13 33 33 H 1.09000 * 109.47574 * 29.71676 * 15 14 13 34 34 H 0.97007 * 120.00393 * 0.02562 * 18 16 15 35 35 H 0.96996 * 120.00032 * 359.97438 * 19 18 16 36 36 H 1.07995 * 120.45774 * 0.02562 * 21 20 19 37 37 H 1.08000 * 120.34464 * 180.28681 * 24 22 21 38 38 H 1.08005 * 119.56583 * 179.72129 * 25 24 22 39 39 H 1.08002 * 120.03705 * 180.23578 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2847 2.7465 0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4573 -3.4395 0.0926 12 6 4.2024 -4.5969 0.2012 13 6 3.5685 -5.8199 0.3281 14 6 2.1875 -5.8885 0.3360 15 6 1.5010 -7.2234 0.4693 16 6 1.2649 -7.8058 -0.9005 17 8 1.6196 -7.1970 -1.8876 18 7 0.6596 -9.0031 -1.0285 19 7 0.4405 -9.5447 -2.3019 20 6 -0.1834 -10.7799 -2.4339 21 6 -0.3982 -11.3115 -3.7011 22 6 -1.0259 -12.5399 -3.8180 23 17 -1.3223 -13.2407 -5.3783 24 6 -1.4080 -13.2022 -2.6568 25 6 -1.1630 -12.6150 -1.4326 26 7 -0.5674 -11.4399 -1.3521 27 6 1.4366 -4.7344 0.2278 28 1 -0.4849 0.8401 -0.0004 29 1 3.9527 -2.4846 -0.0027 30 1 5.2811 -4.5469 0.1916 31 1 4.1535 -6.7233 0.4174 32 1 0.5458 -7.0917 0.9776 33 1 2.1304 -7.8996 1.0479 34 1 0.3755 -9.4899 -0.2390 35 1 0.7242 -9.0578 -3.0914 36 1 -0.0833 -10.7715 -4.5818 37 1 -1.8957 -14.1642 -2.7127 38 1 -1.4622 -13.1238 -0.5281 39 1 0.3579 -4.7882 0.2379 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182971260.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:15 Heat of formation + Delta-G solvation = 34.881744 kcal Electronic energy + Delta-G solvation = -25525.971724 eV Core-core repulsion = 21461.847411 eV Total energy + Delta-G solvation = -4064.124313 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.82650 -39.84757 -38.81748 -37.25953 -36.65302 -35.97567 -32.91524 -32.51068 -32.30546 -31.85120 -29.44939 -28.96281 -26.85378 -25.22261 -24.24087 -23.20572 -21.79751 -21.46927 -20.51538 -18.93870 -17.96783 -17.58468 -16.98840 -16.87241 -16.26695 -15.99776 -15.69669 -15.09741 -14.89334 -14.87279 -14.42831 -14.30890 -14.19382 -14.04065 -13.50142 -13.45730 -12.98587 -12.77394 -12.64404 -12.43799 -12.07499 -11.74468 -11.53216 -11.52617 -11.26103 -10.84288 -10.78752 -10.62398 -10.45068 -10.17582 -10.00766 -9.93202 -9.81777 -9.32704 -8.81245 -8.07987 -7.84268 -7.20824 -6.41807 -4.00944 0.62103 0.78845 1.32896 1.73685 2.20682 2.41247 2.56973 3.15035 3.15983 3.18739 3.32418 3.45911 3.98859 4.24327 4.43917 4.51967 4.54794 4.75608 4.88379 5.05972 5.10317 5.11546 5.19527 5.20075 5.46074 5.57693 5.63247 5.74553 5.91980 5.94122 6.17960 6.34382 6.39081 6.66391 6.89620 6.92243 7.08473 7.25622 7.27396 7.37907 7.45422 7.63608 7.83147 8.02955 8.21465 9.03744 9.74277 10.76285 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.020181 B = 0.001702 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.143005 B =16450.419062 C =17040.706524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.179 6.179 10 C 0.154 3.846 11 C -0.228 4.228 12 C -0.075 4.075 13 C -0.195 4.195 14 C -0.036 4.036 15 C -0.080 4.080 16 C 0.513 3.487 17 O -0.520 6.520 18 N -0.524 5.524 19 N -0.512 5.512 20 C 0.422 3.578 21 C -0.228 4.228 22 C 0.058 3.942 23 Cl -0.051 7.051 24 C -0.232 4.232 25 C 0.172 3.828 26 N -0.546 5.546 27 C -0.173 4.173 28 H 0.270 0.730 29 H 0.127 0.873 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.431 0.569 35 H 0.443 0.557 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.168 0.832 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.323 -26.889 -2.719 27.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.108 0.892 9 O -0.082 6.082 10 C 0.100 3.900 11 C -0.248 4.248 12 C -0.093 4.093 13 C -0.214 4.214 14 C -0.037 4.037 15 C -0.121 4.121 16 C 0.300 3.700 17 O -0.392 6.392 18 N -0.273 5.273 19 N -0.239 5.239 20 C 0.185 3.815 21 C -0.255 4.255 22 C 0.023 3.977 23 Cl -0.022 7.022 24 C -0.256 4.256 25 C 0.014 3.986 26 N -0.266 5.266 27 C -0.192 4.192 28 H 0.080 0.920 29 H 0.144 0.856 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.273 0.727 35 H 0.288 0.712 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.185 0.815 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.315 -25.758 -2.624 25.925 hybrid contribution 0.284 0.310 -1.029 1.112 sum -1.030 -25.448 -3.654 25.730 Atomic orbital electron populations 1.70033 1.05935 1.27693 1.46234 1.25280 0.95844 0.98791 0.96627 0.85786 0.78687 0.79823 0.79157 1.19534 1.20311 1.19521 1.21269 0.91753 0.80846 1.52904 0.89158 1.83975 1.34220 1.11372 1.78662 1.19273 0.90255 0.87987 0.92453 1.21192 0.93837 0.99010 1.10729 1.20684 0.98421 0.92303 0.97913 1.20355 0.93233 0.96996 1.10835 1.18573 0.93220 0.91423 1.00448 1.20483 1.03204 0.95925 0.92490 1.21179 0.77061 0.78728 0.93067 1.90785 1.49717 1.59162 1.39571 1.45069 1.62993 1.20470 0.98804 1.43219 1.63721 1.16819 1.00129 1.18006 0.89410 0.85071 0.89051 1.20977 1.09360 0.97821 0.97384 1.20870 0.96234 0.93145 0.87447 1.98407 1.94218 1.83476 1.26134 1.21764 1.08716 1.03548 0.91567 1.22417 0.90266 0.88756 0.97139 1.67079 1.17990 1.10764 1.30765 1.19952 0.99106 0.89975 1.10190 0.92028 0.85580 0.87417 0.87842 0.87594 0.87740 0.72722 0.71161 0.83682 0.83873 0.81472 0.86733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.63 13.67 55.48 0.76 -24.87 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.77 29.55 -169.99 -5.02 15.75 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.39 -11.11 9.49 30.89 0.29 -10.82 16 8 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16 9 O -0.18 -5.20 9.76 0.07 0.00 -5.20 16 10 C 0.15 3.81 6.65 -39.11 -0.26 3.55 16 11 C -0.23 -5.10 9.17 -39.40 -0.36 -5.46 16 12 C -0.07 -1.42 10.04 -39.61 -0.40 -1.81 16 13 C -0.20 -3.43 9.70 -39.54 -0.38 -3.81 16 14 C -0.04 -0.63 4.37 -104.66 -0.46 -1.09 16 15 C -0.08 -0.99 5.83 -29.04 -0.17 -1.16 16 16 C 0.51 7.05 7.94 -10.99 -0.09 6.97 16 17 O -0.52 -9.51 15.87 5.56 0.09 -9.43 16 18 N -0.52 -5.68 6.29 31.22 0.20 -5.48 16 19 N -0.51 -5.43 6.42 31.12 0.20 -5.23 16 20 C 0.42 4.06 7.59 -155.02 -1.18 2.88 16 21 C -0.23 -1.91 9.76 -39.19 -0.38 -2.30 16 22 C 0.06 0.45 6.37 -39.21 -0.25 0.20 16 23 Cl -0.05 -0.37 29.02 -51.86 -1.50 -1.88 16 24 C -0.23 -1.49 9.93 -39.39 -0.39 -1.89 16 25 C 0.17 1.14 11.17 -17.58 -0.20 0.95 16 26 N -0.55 -4.96 9.37 -12.45 -0.12 -5.07 16 27 C -0.17 -3.71 9.65 -39.39 -0.38 -4.09 16 28 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 29 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 30 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 31 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.11 1.09 8.08 -51.93 -0.42 0.67 16 33 H 0.10 0.95 8.08 -51.93 -0.42 0.53 16 34 H 0.43 3.76 7.95 -182.59 -1.45 2.31 16 35 H 0.44 4.69 7.99 -182.60 -1.46 3.23 16 36 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 38 H 0.17 0.57 8.06 -52.48 -0.42 0.15 16 39 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 364.01 15.07 5.49 5.49 Total: -1.00 -34.91 364.01 -10.60 -45.52 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -5.99 Total: 7.30 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -4.70 Total: -16.90 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 1.04 Total: -40.66 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.09 Total: -14.62 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.50 Total: -1.88 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.91 -10.60 -45.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182971260.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.398 kcal (2) G-P(sol) polarization free energy of solvation -34.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds