Wall clock time and date at job start Wed Apr 1 2020 04:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86803 * 120.00240 * 2 1 4 4 H 1.48497 * 109.47188 * 239.99965 * 3 2 1 5 5 H 1.48497 * 109.47130 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46889 * 120.00028 * 3 2 1 7 7 C 1.38656 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00158 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99841 * 359.97438 * 7 2 1 10 10 C 1.35746 * 117.00055 * 185.05854 * 9 7 2 11 11 C 1.38897 * 120.07011 * 354.48546 * 10 9 7 12 12 C 1.38081 * 119.93311 * 179.97438 * 11 10 9 13 13 C 1.38328 * 120.06458 * 359.75066 * 12 11 10 14 14 C 1.38273 * 120.14125 * 0.50918 * 13 12 11 15 15 C 1.50694 * 119.96519 * 179.77004 * 14 13 12 16 16 C 1.50703 * 109.46973 * 269.71878 * 15 14 13 17 17 O 1.21278 * 120.00017 * 0.02562 * 16 15 14 18 18 N 1.34772 * 120.00071 * 180.02562 * 16 15 14 19 19 N 1.40098 * 120.00160 * 180.02562 * 18 16 15 20 20 C 1.39013 * 120.00164 * 179.97438 * 19 18 16 21 21 C 1.39083 * 119.69790 * 179.97438 * 20 19 18 22 22 C 1.38449 * 119.08031 * 180.27917 * 21 20 19 23 23 Cl 1.73598 * 120.76181 * 179.72471 * 22 21 20 24 24 C 1.39030 * 118.47522 * 359.43883 * 22 21 20 25 25 C 1.37968 * 119.31112 * 0.56280 * 24 22 21 26 26 N 1.31988 * 120.87258 * 359.70201 * 25 24 22 27 27 C 1.38119 * 120.06780 * 359.48478 * 14 13 12 28 28 H 0.97002 * 119.99446 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.03232 * 359.95959 * 11 10 9 30 30 H 1.07995 * 119.96647 * 180.02562 * 12 11 10 31 31 H 1.08001 * 119.92756 * 180.27498 * 13 12 11 32 32 H 1.09004 * 109.47412 * 149.72246 * 15 14 13 33 33 H 1.09000 * 109.47574 * 29.71676 * 15 14 13 34 34 H 0.97007 * 120.00393 * 0.02562 * 18 16 15 35 35 H 0.96996 * 120.00032 * 359.97438 * 19 18 16 36 36 H 1.07995 * 120.45774 * 0.02562 * 21 20 19 37 37 H 1.08000 * 120.34464 * 180.28681 * 24 22 21 38 38 H 1.08005 * 119.56583 * 179.72129 * 25 24 22 39 39 H 1.08002 * 120.03705 * 180.23578 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2847 2.7465 0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4573 -3.4395 0.0926 12 6 4.2024 -4.5969 0.2012 13 6 3.5685 -5.8199 0.3281 14 6 2.1875 -5.8885 0.3360 15 6 1.5010 -7.2234 0.4693 16 6 1.2649 -7.8058 -0.9005 17 8 1.6196 -7.1970 -1.8876 18 7 0.6596 -9.0031 -1.0285 19 7 0.4405 -9.5447 -2.3019 20 6 -0.1834 -10.7799 -2.4339 21 6 -0.3982 -11.3115 -3.7011 22 6 -1.0259 -12.5399 -3.8180 23 17 -1.3223 -13.2407 -5.3783 24 6 -1.4080 -13.2022 -2.6568 25 6 -1.1630 -12.6150 -1.4326 26 7 -0.5674 -11.4399 -1.3521 27 6 1.4366 -4.7344 0.2278 28 1 -0.4849 0.8401 -0.0004 29 1 3.9527 -2.4846 -0.0027 30 1 5.2811 -4.5469 0.1916 31 1 4.1535 -6.7233 0.4174 32 1 0.5458 -7.0917 0.9776 33 1 2.1304 -7.8996 1.0479 34 1 0.3755 -9.4899 -0.2390 35 1 0.7242 -9.0578 -3.0914 36 1 -0.0833 -10.7715 -4.5818 37 1 -1.8957 -14.1642 -2.7127 38 1 -1.4622 -13.1238 -0.5281 39 1 0.3579 -4.7882 0.2379 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182971260.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:14 Heat of formation + Delta-G solvation = 11.889290 kcal Electronic energy + Delta-G solvation = -25526.968751 eV Core-core repulsion = 21461.847411 eV Total energy + Delta-G solvation = -4065.121341 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.55976 -41.00747 -40.36197 -38.30220 -37.81681 -36.94463 -34.35352 -33.88936 -33.15546 -32.99082 -30.92154 -30.01765 -28.13084 -27.19516 -24.85328 -23.94878 -23.27868 -22.86583 -21.81575 -19.87863 -19.33511 -18.83363 -18.67480 -17.68429 -16.90918 -16.88688 -16.76870 -16.62759 -16.15236 -16.09022 -15.58113 -15.55118 -15.46741 -15.14209 -14.85792 -14.70992 -14.33711 -14.00247 -13.69365 -13.56007 -13.30397 -12.96072 -12.93395 -12.58939 -12.47475 -12.40759 -12.21706 -12.13201 -12.09357 -11.25289 -11.19490 -10.79426 -10.72616 -10.57218 -10.52554 -9.65048 -8.97463 -8.60834 -8.46526 -6.15029 0.03410 0.18318 0.40438 0.73063 0.79757 1.13612 1.34033 1.45486 1.50630 1.53927 2.18024 2.68074 2.72492 2.87043 3.16845 3.43616 3.62915 3.76966 3.87137 3.95759 4.03177 4.11590 4.32633 4.34773 4.42943 4.55176 4.58775 4.64310 4.66453 4.75182 5.04470 5.06237 5.13183 5.29277 5.33481 5.65299 5.66457 5.73274 5.75654 6.03089 6.08853 6.24179 6.46610 6.93374 6.97930 7.28974 7.79687 8.76711 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.020181 B = 0.001702 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.143005 B =16450.419062 C =17040.706524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.020 2.980 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.414 4.414 8 H 0.100 0.900 9 O -0.234 6.234 10 C 0.110 3.890 11 C -0.245 4.245 12 C -0.075 4.075 13 C -0.177 4.177 14 C -0.027 4.027 15 C -0.077 4.077 16 C 0.515 3.485 17 O -0.575 6.575 18 N -0.506 5.506 19 N -0.523 5.523 20 C 0.406 3.594 21 C -0.236 4.236 22 C 0.047 3.953 23 Cl -0.049 7.049 24 C -0.222 4.222 25 C 0.169 3.831 26 N -0.558 5.558 27 C -0.190 4.190 28 H 0.272 0.728 29 H 0.117 0.883 30 H 0.145 0.855 31 H 0.150 0.850 32 H 0.129 0.871 33 H 0.152 0.848 34 H 0.442 0.558 35 H 0.440 0.560 36 H 0.150 0.850 37 H 0.168 0.832 38 H 0.202 0.798 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.140 -30.190 -1.736 30.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.838 3.162 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.180 1.180 7 C -0.490 4.490 8 H 0.118 0.882 9 O -0.141 6.141 10 C 0.060 3.940 11 C -0.264 4.264 12 C -0.093 4.093 13 C -0.196 4.196 14 C -0.028 4.028 15 C -0.117 4.117 16 C 0.302 3.698 17 O -0.452 6.452 18 N -0.254 5.254 19 N -0.252 5.252 20 C 0.170 3.830 21 C -0.262 4.262 22 C 0.012 3.988 23 Cl -0.020 7.020 24 C -0.245 4.245 25 C 0.011 3.989 26 N -0.278 5.278 27 C -0.210 4.210 28 H 0.081 0.919 29 H 0.135 0.865 30 H 0.163 0.837 31 H 0.167 0.833 32 H 0.147 0.853 33 H 0.170 0.830 34 H 0.287 0.713 35 H 0.285 0.715 36 H 0.168 0.832 37 H 0.185 0.815 38 H 0.219 0.781 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.147 -29.181 -1.612 29.226 hybrid contribution -0.150 0.831 -1.339 1.583 sum -0.003 -28.351 -2.951 28.504 Atomic orbital electron populations 1.70187 1.08012 1.28795 1.49023 1.26613 0.96900 1.02764 0.95932 0.84641 0.77381 0.74220 0.79914 1.18365 1.19548 1.17967 1.21779 0.92486 0.81506 1.53241 0.88232 1.83934 1.35900 1.12564 1.81747 1.19896 0.91688 0.87976 0.94472 1.21311 0.93140 1.00277 1.11682 1.21141 1.00248 0.91509 0.96374 1.20998 0.93481 0.98105 1.06982 1.19095 0.93711 0.92553 0.97404 1.20594 1.04974 0.93648 0.92533 1.21267 0.76728 0.79008 0.92764 1.90778 1.52478 1.60744 1.41223 1.44807 1.61392 1.19619 0.99620 1.43297 1.64805 1.17426 0.99672 1.18124 0.90180 0.84980 0.89709 1.21084 1.09549 0.98281 0.97331 1.21051 0.96453 0.93173 0.88098 1.98409 1.94177 1.83311 1.26116 1.22113 1.07336 1.04124 0.90966 1.23035 0.89273 0.88004 0.98554 1.67101 1.18329 1.11692 1.30672 1.20241 0.99370 0.90449 1.10908 0.91881 0.86503 0.83711 0.83273 0.85289 0.82998 0.71339 0.71541 0.83218 0.81461 0.78104 0.87419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.96 13.67 21.61 0.30 -57.66 16 2 C -0.02 -1.46 5.49 84.83 0.47 -0.99 16 3 Si 1.02 43.96 29.55 68.60 2.03 45.99 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 6 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 7 C -0.41 -24.92 9.49 67.92 0.64 -24.28 16 8 H 0.10 5.51 5.20 -2.91 -0.02 5.49 16 9 O -0.23 -14.68 9.76 -22.68 -0.22 -14.90 16 10 C 0.11 5.72 6.65 22.58 0.15 5.87 16 11 C -0.24 -11.17 9.17 22.39 0.21 -10.96 16 12 C -0.07 -2.66 10.04 22.25 0.22 -2.44 16 13 C -0.18 -5.59 9.70 22.30 0.22 -5.37 16 14 C -0.03 -0.90 4.37 -19.89 -0.09 -0.98 16 15 C -0.08 -1.64 5.83 29.10 0.17 -1.47 16 16 C 0.51 13.18 7.94 87.66 0.70 13.87 16 17 O -0.58 -20.81 15.87 -3.02 -0.05 -20.86 16 18 N -0.51 -9.98 6.29 -173.54 -1.09 -11.07 16 19 N -0.52 -10.65 6.42 -55.45 -0.36 -11.01 16 20 C 0.41 7.28 7.59 133.04 1.01 8.29 16 21 C -0.24 -3.73 9.76 22.52 0.22 -3.51 16 22 C 0.05 0.65 6.37 22.51 0.14 0.79 16 23 Cl -0.05 -0.64 29.02 -2.72 -0.08 -0.72 16 24 C -0.22 -2.24 9.93 22.40 0.22 -2.01 16 25 C 0.17 1.72 11.17 84.61 0.95 2.67 16 26 N -0.56 -8.84 9.37 -193.31 -1.81 -10.65 16 27 C -0.19 -8.40 9.65 22.39 0.22 -8.19 16 28 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 29 H 0.12 5.40 5.64 -2.91 -0.02 5.38 16 30 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 31 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 32 H 0.13 2.23 8.08 -2.39 -0.02 2.21 16 33 H 0.15 1.86 8.08 -2.39 -0.02 1.84 16 34 H 0.44 6.47 7.95 -213.31 -1.70 4.78 16 35 H 0.44 9.38 7.99 -213.33 -1.71 7.68 16 36 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 37 H 0.17 0.84 8.06 -2.91 -0.02 0.81 16 38 H 0.20 0.55 8.06 -2.91 -0.02 0.53 16 39 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -83.55 364.01 1.90 -81.65 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: -2.26 Total: 27.95 kcal Atomic # 6 Polarization: -34.16 SS G_CDS: 5.44 Total: -28.72 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -2.96 Total: -90.39 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -0.27 Total: -35.76 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -0.08 Total: -0.72 kcal Total: -83.55 1.90 -81.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182971260.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.542 kcal (2) G-P(sol) polarization free energy of solvation -83.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds